genome.fa.s5193.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005193.1 Hibiscus syriacus cultivar Beakdansim tig00011732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65637

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1064--1354	45	6.5	45	84	4	167	27	21	10	39	1.87
1098--1361	90	2.9	90	86	1	388	26	20	11	41	1.86
1751--1821	22	3.5	21	83	9	85	29	23	16	29	1.97
4766--4827	26	2.6	24	77	22	76	45	3	8	43	1.49
4621--4913	69	4.1	70	74	13	219	44	4	9	41	1.56
4711--4927	33	6.3	34	74	18	173	44	2	9	43	1.49
4952--5034	3	25.7	3	81	18	80	31	2	0	66	1.05
4952--5034	13	6.7	12	78	17	73	31	2	0	66	1.05
4953--5034	36	2.3	36	97	0	155	31	2	0	65	1.05
6161--6219	29	2.0	29	83	6	75	23	13	3	59	1.50
6249--6286	20	1.9	20	94	0	67	10	13	7	68	1.39
12892--12950	24	2.4	25	94	5	102	18	45	18	16	1.85
17108--17208	34	3.0	34	91	0	166	32	10	19	36	1.87
20335--20508	90	2.0	88	94	2	303	44	5	11	37	1.64
31465--31535	35	2.0	36	88	2	108	35	23	12	28	1.92
31995--32140	63	2.3	63	92	2	240	41	14	14	30	1.85
33344--33418	30	2.5	30	85	12	100	61	8	13	17	1.55
34658--34696	3	13.3	3	84	15	55	69	0	0	30	0.89
34939--35216	134	2.1	134	83	4	346	23	17	31	26	1.97
35232--35320	28	3.1	28	75	16	92	48	13	12	25	1.77
35280--35408	63	2.0	67	83	6	167	45	16	15	22	1.84
35779--35832	28	1.9	28	88	0	81	42	14	14	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43434--43464	3	10.3	3	92	0	53	67	3	0	29	1.06
43429--43488	15	3.8	15	77	18	59	70	3	0	26	1.03
47517--47607	28	3.2	28	87	1	110	30	1	20	47	1.58
47543--47616	28	2.6	28	89	0	103	31	1	21	45	1.60
47841--47905	3	21.0	3	84	6	76	36	3	0	60	1.13
48663--48699	19	1.9	19	88	0	56	48	0	40	10	1.38
62032--62201	78	2.2	79	88	5	247	37	15	18	28	1.92
62109--62497	118	3.3	118	88	3	565	36	16	20	25	1.94
62831--62899	19	3.8	19	74	18	74	36	1	0	62	1.04
62801--62881	25	3.3	25	84	5	94	37	0	0	62	0.95
62801--62875	28	2.7	28	91	2	116	37	0	0	62	0.95
62864--62908	23	2.0	23	95	0	81	42	4	2	51	1.34
62801--62881	3	26.3	3	78	9	83	37	0	0	62	0.95

Tables:   1

The End!