Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005194.1 Hibiscus syriacus cultivar Beakdansim tig00011734_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30789

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5340--5386
3
14.7
3
87
12
67
68
0
0
31
0.90
5670--5878
43
4.7
43
75
15
185
20
19
33
26
1.97
5663--5930
134
2.0
134
91
1
439
21
19
33
25
1.96
5936--6031
28
3.3
28
83
12
106
44
13
15
26
1.83
6033--6215
66
2.8
63
73
8
161
39
14
19
26
1.90
6413--6775
66
5.6
66
71
8
160
40
12
17
29
1.87
7028--7138
37
3.2
37
67
21
112
46
10
13
28
1.77
7055--7194
30
4.4
30
72
21
117
41
13
11
33
1.80
6999--7168
67
2.5
67
94
0
286
44
10
12
32
1.77
7269--7357
29
3.1
29
87
8
119
44
12
11
31
1.77
7274--7371
28
3.4
29
81
8
112
47
14
11
26
1.77
7618--7735
36
3.3
36
83
6
136
37
11
19
31
1.88
7730--7919
105
1.8
105
89
2
301
38
11
18
31
1.87
7789--8075
156
1.8
157
87
3
427
38
11
17
31
1.86
8469--10836
4
601.0
4
96
3
4475
24
0
25
49
1.50
16254--16354
30
3.4
29
77
9
80
57
10
12
18
1.64
17428--17455
2
14.0
2
100
0
56
50
0
0
50
1.00
17790--17839
3
15.7
3
88
12
73
68
0
0
32
0.90
18815--18876
31
2.0
32
87
3
90
25
32
22
19
1.97
28876--28909
12
2.9
11
91
8
50
32
5
0
61
1.20

Tables:   1

The End!