Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005195.1 Hibiscus syriacus cultivar Beakdansim tig00011736_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 118576
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:1510 original size:64 final size:63
Alignment explanation
Indices: 1419--1556 Score: 145
Period size: 64 Copynumber: 2.2 Consensus size: 63
1409 ATTGAATTTA
* * * *
1419 CATCGATGCACTCTTTAAAGAAGAAACATCGAATGCAAATGGTGCATCGATGCATAAGG-AGTG
1 CATCGATGCACCCTTTAAAGAAGAAACAACAAAGGCAAATGGTGCATCGATGCAT-AGGTAGTG
* * * * * *
1482 CATCGATGCATCCCTTTAAA-ATGAAAACAACAAAGGTAATTTGTGTATCGATGCATGGGTAGTG
1 CATCGATGCA-CCCTTTAAAGAAG-AAACAACAAAGGCAAATGGTGCATCGATGCATAGGTAGTG
1546 CATCGATGCAC
1 CATCGATGCAC
1557 ATGTTAAAGA
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
63 15 0.24
64 47 0.76
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (63 bp):
CATCGATGCACCCTTTAAAGAAGAAACAACAAAGGCAAATGGTGCATCGATGCATAGGTAGTG
Found at i:1592 original size:20 final size:20
Alignment explanation
Indices: 1567--1618 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
1557 ATGTTAAAGA
1567 ATGCATCGATGCATTGTAGC
1 ATGCATCGATGCATTGTAGC
1587 ATGCATCGATGCATTGTAGC
1 ATGCATCGATGCATTGTAGC
1607 ATGCATC-ATGCA
1 ATGCATCGATGCA
1619 CTTCATGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 5 0.16
20 27 0.84
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (20 bp):
ATGCATCGATGCATTGTAGC
Found at i:4650 original size:16 final size:16
Alignment explanation
Indices: 4626--4668 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
4616 GGGTACCTAT
*
4626 AAAATTTAAAAATCAA
1 AAAAATTAAAAATCAA
*
4642 AAAAATT-AAAATTAA
1 AAAAATTAAAAATCAA
4657 ACAAAATTAAAA
1 A-AAAATTAAAA
4669 TCGAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 8 0.35
16 12 0.52
17 3 0.13
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAATTAAAAATCAA
Found at i:4669 original size:16 final size:15
Alignment explanation
Indices: 4634--4675 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
4624 ATAAAATTTA
4634 AAAATCAAAAAAATT
1 AAAATCAAAAAAATT
*
4649 AAAATTAAACAAAATT
1 AAAATCAAA-AAAATT
4665 AAAATCGAAAA
1 AAAATC-AAAA
4676 TAAGAACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 8 0.35
16 12 0.52
17 3 0.13
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAATCAAAAAAATT
Found at i:6375 original size:20 final size:21
Alignment explanation
Indices: 6345--6383 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
6335 GCCGTTGGGG
6345 CCTTATGGTATCGATACTATA
1 CCTTATGGTATCGATACTATA
6366 CCTT-TGGTATCGATACTA
1 CCTTATGGTATCGATACTA
6384 CTATACATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (21 bp):
CCTTATGGTATCGATACTATA
Found at i:22088 original size:8 final size:8
Alignment explanation
Indices: 22075--22115 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
22065 CTCATTTTCA
22075 GAGAATTT
1 GAGAATTT
22083 GAGAATTT
1 GAGAATTT
*
22091 -AGAGTTT
1 GAGAATTT
*
22098 GGGAATTT
1 GAGAATTT
22106 GAGAATTT
1 GAGAATTT
22114 GA
1 GA
22116 AAGATTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:22414 original size:128 final size:128
Alignment explanation
Indices: 22186--23325 Score: 2086
Period size: 128 Copynumber: 8.9 Consensus size: 128
22176 TAATCGGAGT
22186 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
*
22251 CATTGCCCTATTATGTCCCTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
22314 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
22379 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
22442 ACTATTCACATGAAGGCGCGTTTCCGGGGGCGCGCCTTCCATTATTTCGTTAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
22507 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
22570 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
*
22635 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACGTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* * ***
22698 TCAAAGGACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
*
22763 CATTGCCCTATTATGTCACTCATATCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* * *
22826 ACTATTCACATGAAGGCGCATTCCCGGGGGCACGCCTTCCATTATTTCATCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
22891 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
22954 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
23019 CATTGCCCTATTATGTCACTCATGTCCCTC-GGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* ***
23081 TC-AGGGGACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTA
1 ACTA-TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTA
23145 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
65 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
23209 ACTATTCACATGAAGGCGCGTTCCCGGGGGCTCGCCTTCCATTATTTCATCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
23274 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
23326 AATCAGGTAA
Statistics
Matches: 974, Mismatches: 35, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
126 1 0.00
127 121 0.12
128 851 0.87
129 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (128 bp):
ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
Found at i:23764 original size:34 final size:34
Alignment explanation
Indices: 23726--23825 Score: 130
Period size: 33 Copynumber: 3.0 Consensus size: 34
23716 AAATTTAATG
*
23726 TTAAATTTTGAATACTATAATTTATATTTTAAAT
1 TTAAATTTTGAATAATATAATTTATATTTTAAAT
* * * *
23760 TTAAA-TTTGAATAATATTATTTTTATTTTTATT
1 TTAAATTTTGAATAATATAATTTATATTTTAAAT
* *
23793 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTTGAATAATATAATTTATATTTTAAA
23826 AACATTTATC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
33 28 0.51
34 27 0.49
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (34 bp):
TTAAATTTTGAATAATATAATTTATATTTTAAAT
Found at i:24433 original size:21 final size:21
Alignment explanation
Indices: 24345--24438 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
24335 TATGGTATAA
*
24345 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
*
24366 AA-CCTGGCGGGCTAGGCATGT
1 AACCCT-GCGGGCTAGGAATGT
*
24387 AA-CCTGGCGGGCTATGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
24408 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
24429 AACCCTGCGG
1 AACCCTGCGG
24439 AGATGGCATA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
20 3 0.04
21 61 0.91
22 3 0.04
ACGTcount: A:0.20, C:0.27, G:0.34, T:0.19
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:24468 original size:21 final size:21
Alignment explanation
Indices: 24442--24489 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
24432 CCTGCGGAGA
*
24442 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
24463 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
*
24484 GGGCAT
1 TGGCAT
24490 GTACCCCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.40, T:0.25
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:26256 original size:35 final size:32
Alignment explanation
Indices: 26215--26299 Score: 98
Period size: 32 Copynumber: 2.6 Consensus size: 32
26205 AATTCTAAAT
26215 AAATAATAATTATATAAATATTATTTTAATAAAAA
1 AAATAATAATTATATAAATA-TA--TTAATAAAAA
* * *
26250 AAATAATATTTACATAAATATATTAATATAAA
1 AAATAATAATTATATAAATATATTAATAAAAA
* *
26282 AAATAATAACTATTTAAA
1 AAATAATAATTATATAAA
26300 AAAATACTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 23 0.53
34 2 0.05
35 18 0.42
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (32 bp):
AAATAATAATTATATAAATATATTAATAAAAA
Found at i:26289 original size:32 final size:34
Alignment explanation
Indices: 26210--26290 Score: 103
Period size: 35 Copynumber: 2.4 Consensus size: 34
26200 TTAATAATTC
*
26210 TAAATAAATAATAATTATATAAATATTATTTTAATA
1 TAAA-AAATAATAATTACATAAATATTA-TTTAATA
* *
26246 AAAAAAATAATATTTACATAAATA-TA-TTAATA
1 TAAAAAATAATAATTACATAAATATTATTTAATA
26278 TAAAAAATAATAA
1 TAAAAAATAATAA
26291 CTATTTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
32 17 0.43
34 2 0.05
35 18 0.45
36 3 0.08
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (34 bp):
TAAAAAATAATAATTACATAAATATTATTTAATA
Found at i:26315 original size:34 final size:34
Alignment explanation
Indices: 26243--26322 Score: 92
Period size: 34 Copynumber: 2.3 Consensus size: 34
26233 TATTATTTTA
* * *
26243 ATAAAAAAAATAATATTTACATAAATATATTAAT
1 ATAAAAAAAATAATATTTACATAAAAATACTAAC
26277 ATAAAAAATAATAACTATTTA-A-AAAAATACTAAC
1 ATAAAAAA-AATAA-TATTTACATAAAAATACTAAC
26311 ATAAAAATAAAT
1 ATAAAAA-AAAT
26323 TTCTTACCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
34 27 0.68
35 7 0.17
36 6 0.15
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (34 bp):
ATAAAAAAAATAATATTTACATAAAAATACTAAC
Found at i:39456 original size:18 final size:19
Alignment explanation
Indices: 39422--39457 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
39412 AAATTTATTT
*
39422 ATTGTTTTTACCATTTTTC
1 ATTGTCTTTACCATTTTTC
39441 ATTGTCTTTA-CATTTTT
1 ATTGTCTTTACCATTTTT
39458 ATCATTTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.17, C:0.14, G:0.06, T:0.64
Consensus pattern (19 bp):
ATTGTCTTTACCATTTTTC
Found at i:40282 original size:83 final size:83
Alignment explanation
Indices: 40192--40438 Score: 356
Period size: 83 Copynumber: 3.0 Consensus size: 83
40182 GGAATTTTGA
* * * *
40192 GAGAGTTTTACTCCAACTAAA-ACTCTTTTAATATCTAAATTTAATCATATTATTATATATTTAA
1 GAGAGTTTTACTCCAATTAAACA-TCTTTTAATATCTAAATTTAATCAGATAATAATATATTTAA
*
40256 AATTTAAAATAGTAAACAT
65 AATTTAAAATATTAAACAT
* * * *
40275 GAGAGTTTTGCTCCAATTAAACATCTTTTAATATCTAAATTTAAACAGATAATAATATCTTTTAA
1 GAGAGTTTTACTCCAATTAAACATCTTTTAATATCTAAATTTAATCAGATAATAATATATTTAAA
*
40340 ATTTAAAATATTAAACCT
66 ATTTAAAATATTAAACAT
40358 GAGAGTTTTACTCC-ATTAAACATCTTTTAATATCTAAATTTAAAT-AGATAATAATATATTTAA
1 GAGAGTTTTACTCCAATTAAACATCTTTTAATATCTAAATTT-AATCAGATAATAATATATTTAA
*
40421 ATTTTAAAATATTAAACA
65 AATTTAAAATATTAAACA
40439 AATATACATT
Statistics
Matches: 146, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
82 59 0.40
83 86 0.59
84 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.05, T:0.40
Consensus pattern (83 bp):
GAGAGTTTTACTCCAATTAAACATCTTTTAATATCTAAATTTAATCAGATAATAATATATTTAAA
ATTTAAAATATTAAACAT
Found at i:53086 original size:23 final size:23
Alignment explanation
Indices: 53060--53128 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
53050 CACCACAGCT
*
53060 CGTATAAATGCACCTAAGTGCCA
1 CGTAGAAATGCACCTAAGTGCCA
** * *
53083 CGTAGATTTGCACCGAAGTGCCG
1 CGTAGAAATGCACCTAAGTGCCA
*
53106 CCTAGAAATGCA-CTGAAGTGCCA
1 CGTAGAAATGCACCT-AAGTGCCA
53129 TATAAGATGT
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
22 1 0.03
23 34 0.97
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCTAAGTGCCA
Found at i:55695 original size:43 final size:42
Alignment explanation
Indices: 55625--55710 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 42
55615 GTAAAACAAT
55625 TGTAACATACTTGCGGGAACCTAACGCTTGTAGTAATATGGC
1 TGTAACATACTTGCGGGAACCTAACGCTTGTAGTAATATGGC
*
55667 TGTAACATCACTTGCGGGAACCTGACGCTTGTAGTAATATGGC
1 TGTAACAT-ACTTGCGGGAACCTAACGCTTGTAGTAATATGGC
55710 T
1 T
55711 AAGTAGTTGT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 8 0.19
43 34 0.81
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAACATACTTGCGGGAACCTAACGCTTGTAGTAATATGGC
Found at i:59766 original size:18 final size:18
Alignment explanation
Indices: 59747--59783 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
59737 TTTTTATCAA
59747 ATAATCATATATAAAAAAAT
1 ATAAT-ATA-ATAAAAAAAT
59767 ATAATATAATAAAAAAA
1 ATAATATAATAAAAAAA
59784 ATTACCTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 3 0.18
20 5 0.29
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (18 bp):
ATAATATAATAAAAAAAT
Found at i:60635 original size:14 final size:14
Alignment explanation
Indices: 60618--60645 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
60608 ATCATAACAA
60618 AATTATATAACTAT
1 AATTATATAACTAT
60632 AATTATATAACTAT
1 AATTATATAACTAT
60646 TTTTTTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTATATAACTAT
Found at i:61558 original size:182 final size:182
Alignment explanation
Indices: 61251--62103 Score: 1275
Period size: 182 Copynumber: 4.7 Consensus size: 182
61241 TCGGTTTATA
* *
61251 TCGATACTTTATAAAAATGTATCGATCCACATCAATATTAA-AGGTAAAAATATGACAAAACCGG
1 TCGATACTTTATAAAAATGTATCGATCCACAACGATA-TAACAGGTAAAAATATGACAAAACCGG
* *
61315 TCTCGAAAAGACAAAACCGGTAAAGCGGTACCGGATATATTGAAAGTGTCGATACTTTAATATAA
65 TCTCGAAAAGACAAAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTAATATAA
*
61380 GTATCGACAATTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTG
130 GTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTG
* *
61433 TCGATACTTTATAAAAATGTATCGATCCACAATGATATAACAGGTAAAAATATGACAAAATCGGT
1 TCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGT
* * *
61498 TTCGAAAAGATAAAACCGGTAAAGCGCTATCGAATATATTGAAAGTGTCGATACTTTAATATAAG
66 CTCGAAAAGACAAAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTAATATAAG
*
61563 TATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTG
131 TATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTG
* * * * * *
61615 TCGATATTTTATAACAATGTATCAATCTACAACGATATAACAGATAAAAATATGACAAAACCGGC
1 TCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGT
* * * * * *
61680 CTTC-AAAGGACAAAATCGGTATAGAGCGACCGAATATATTGAAAGTGTTGATACTTTAATATAA
66 C-TCGAAAAGACAAAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTAATATAA
*
61744 TTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTG
130 GTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTG
* **
61797 TCGATACTTTATAACAATGTATCGATCCACAACGATA-AATTGGTAAAAATATGACAAAACCGGT
1 TCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGT
* * * * ** * *
61861 CTCTAAAGGACAAAACCGGTATAGAGAGACCGGATATATTGAAAGTGTCGATATTTTAATATAAG
66 CTCGAAAAGACAAAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTAATATAAG
* *
61926 TATCGTCACTTTGTGAGTTTAAAAGAGAAGCAGTTTTAGCG-CATATAAAGTG
131 TATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTC-TATAAAGTG
*
61978 TCGATACTTTATAAAAATGTATCGATCCATAACGATATAACAGGTAAAAATATGACAAAACCGGT
1 TCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGT
* *
62043 CTCGAAATGACAAAACCAGTAAAGCGCTACC-AGATATATTGAAAGTGTCGATACTTTAATA
66 CTCGAAAAGACAAAACCGGTAAAGCGCTACCGA-ATATATTGAAAGTGTCGATACTTTAATA
62104 AGTACGCGTA
Statistics
Matches: 607, Mismatches: 58, Indels: 12
0.90 0.09 0.02
Matches are distributed among these distances:
180 3 0.00
181 165 0.27
182 437 0.72
183 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (182 bp):
TCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGT
CTCGAAAAGACAAAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTAATATAAG
TATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTG
Found at i:62017 original size:363 final size:363
Alignment explanation
Indices: 61251--62103 Score: 1268
Period size: 363 Copynumber: 2.3 Consensus size: 363
61241 TCGGTTTATA
* *
61251 TCGATACTTTATAAAAATGTATCGATCCACATCAATATTAA-AGGTAAAAATATGACAAAACCGG
1 TCGATACTTTATAAAAATGTATCGATCCACAACGATA-TAACAGGTAAAAATATGACAAAACCGG
*
61315 TCTCGAAAAGACAAAACCGGTAA-AGCGGTACCGGATATATTGAAAGTGTCGATACTTTAATATA
65 TCTCGAAAAGACAAAACCGGTAAGAGC-G-ACCGAATATATTGAAAGTGTCGATACTTTAATATA
61379 AGTATCGACAATTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTGTCGATACTTTA
128 AGTATCGACAATTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTGTCGATACTTTA
* * * *
61444 TAAAAATGTATCGATCCACAATGATATAACAGGTAAAAATATGACAAAATCGGTTTCGAAAAGAT
193 TAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAAAGAC
* ** *
61509 AAAACCGGTAAAGCGCTATCGAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTT
258 AAAACCGGTAAAGAGAGACCGAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTT
*
61574 TGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTG
323 TGTGAATTTAAAAGAGAAGCAGTTTTAGCGCATATAAAGTG
* * * * * *
61615 TCGATATTTTATAACAATGTATCAATCTACAACGATATAACAGATAAAAATATGACAAAACCGGC
1 TCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGT
* * *
61680 CTTC-AAAGGACAAAATCGGTATAGAGCGACCGAATATATTGAAAGTGTTGATACTTTAATATAA
66 C-TCGAAAAGACAAAACCGGTA-AGAGCGACCGAATATATTGAAAGTGTCGATACTTTAATATAA
* *
61744 TTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTGTCGATACTTTAT
129 GTATCGACAATTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTGTCGATACTTTAT
* ** * *
61809 AACAATGTATCGATCCACAACGATA-AATTGGTAAAAATATGACAAAACCGGTCTCTAAAGGACA
194 AAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAAAGACA
* * * *
61873 AAACCGGTATAGAGAGACCGGATATATTGAAAGTGTCGATATTTTAATATAAGTATCGTCACTTT
259 AAACCGGTAAAGAGAGACCGAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
*
61938 GTGAGTTTAAAAGAGAAGCAGTTTTAGCGCATATAAAGTG
324 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCATATAAAGTG
*
61978 TCGATACTTTATAAAAATGTATCGATCCATAACGATATAACAGGTAAAAATATGACAAAACCGGT
1 TCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGT
* *
62043 CTCGAAATGACAAAACCAGTAA-AGCGCTACC-AGATATATTGAAAGTGTCGATACTTTAATA
66 CTCGAAAAGACAAAACCGGTAAGAGCG--ACCGA-ATATATTGAAAGTGTCGATACTTTAATA
62104 AGTACGCGTA
Statistics
Matches: 437, Mismatches: 44, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
361 4 0.01
362 4 0.01
363 233 0.53
364 189 0.43
365 4 0.01
366 3 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (363 bp):
TCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGT
CTCGAAAAGACAAAACCGGTAAGAGCGACCGAATATATTGAAAGTGTCGATACTTTAATATAAGT
ATCGACAATTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGTCTATAAAGTGTCGATACTTTATAA
AAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAAAGACAAA
ACCGGTAAAGAGAGACCGAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTGT
GAATTTAAAAGAGAAGCAGTTTTAGCGCATATAAAGTG
Found at i:64112 original size:19 final size:22
Alignment explanation
Indices: 64064--64118 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
64054 ACATTTTTAT
64064 TTTTATATAAAATGATAGTATAA
1 TTTTATATAAAAT-ATAGTATAA
64087 TTATTATATAAAAT-TA-TA-AA
1 TT-TTATATAAAATATAGTATAA
64107 TTTTATTATAAA
1 TTTTA-TATAAA
64119 TGCAGGTTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
19 3 0.10
20 10 0.33
21 2 0.07
22 2 0.07
23 2 0.07
24 11 0.37
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TTTTATATAAAATATAGTATAA
Found at i:64528 original size:21 final size:21
Alignment explanation
Indices: 64504--64547 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
64494 AAGACAATCA
64504 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
*
64525 AGAGTCGAAGAGACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
64546 AG
1 AG
64548 GCATAAGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.11, G:0.34, T:0.14
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:64823 original size:18 final size:18
Alignment explanation
Indices: 64797--64835 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
64787 GAAAAAATAT
*
64797 GAAGGAGAAAAGATGGAG
1 GAAGAAGAAAAGATGGAG
*
64815 GAAGAAGAAAATATGGAG
1 GAAGAAGAAAAGATGGAG
64833 GAA
1 GAA
64836 ATGAGGAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.38, T:0.08
Consensus pattern (18 bp):
GAAGAAGAAAAGATGGAG
Found at i:66398 original size:19 final size:19
Alignment explanation
Indices: 66374--66422 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
66364 AATGTATGAT
66374 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
66393 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
66412 TAATTTTGTAT
1 TAATTTTGTAT
66423 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:66433 original size:18 final size:19
Alignment explanation
Indices: 66374--66441 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
66364 AATGTATGAT
** *
66374 TAATTTTGTATAAGATTTA
1 TAATTTTGTATGCGATATA
* *
66393 TAATTTTGTATACGATTTA
1 TAATTTTGTATGCGATATA
*
66412 TAATTTTGTATGTGA-ATA
1 TAATTTTGTATGCGATATA
*
66430 TAATTATGTATG
1 TAATTTTGTATG
66442 AGATGAGAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
18 13 0.30
19 31 0.70
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (19 bp):
TAATTTTGTATGCGATATA
Found at i:66754 original size:15 final size:15
Alignment explanation
Indices: 66734--66772 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
66724 GTCCAGTATG
66734 GTTCCCAAACGTAAA
1 GTTCCCAAACGTAAA
66749 GTTCCCAAACGTAAA
1 GTTCCCAAACGTAAA
*
66764 GTTTCCAAA
1 GTTCCCAAA
66773 AAATAGGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (15 bp):
GTTCCCAAACGTAAA
Found at i:67108 original size:200 final size:200
Alignment explanation
Indices: 66789--67148 Score: 630
Period size: 200 Copynumber: 1.8 Consensus size: 200
66779 GTAAGCAGAT
* * * *
66789 GTGTCGATACATTTATAAAAAGTATCGACCCCAAAAATATCAAAACTCATAATTATAATATAATA
1 GTGTCGATACATTTATAAAAAGTATCAACCCCAAAAACATCAAAACCCATAATTAAAATATAATA
* *
66854 GGTAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGTGAGAATAGGTCTACATAATGT
66 AGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGT
*
66919 ATCGACACTTTTTAAATTGGTGTCGATACTTTTTGTCCAGAATGAATTTCCAAAATGGTGAACGC
131 ATCAACACTTTTTAAATTGGTGTCGATACTTTTTGTCCAGAATGAATTTCCAAAATGGTGAACGC
66984 ATAAA
196 ATAAA
* * *
66989 GTGTCGATACATTTATAAAAAGTATCAATCCCAAAAACATCGAAACCCATAATTAAAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCAACCCCAAAAACATCAAAACCCATAATTAAAATATAATA
67054 AGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGT
66 AGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGT
67119 ATCAACACTTTTTAAATTGGTGTCGATACT
131 ATCAACACTTTTTAAATTGGTGTCGATACT
67149 GTAGATGCTC
Statistics
Matches: 150, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
200 150 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (200 bp):
GTGTCGATACATTTATAAAAAGTATCAACCCCAAAAACATCAAAACCCATAATTAAAATATAATA
AGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGT
ATCAACACTTTTTAAATTGGTGTCGATACTTTTTGTCCAGAATGAATTTCCAAAATGGTGAACGC
ATAAA
Found at i:70720 original size:45 final size:47
Alignment explanation
Indices: 70641--70746 Score: 144
Period size: 45 Copynumber: 2.3 Consensus size: 47
70631 TTTATTTTTG
* *
70641 TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGG-TTTA
1 TTTTTTGAAT-AATGCATACGAACTAGATATCATGCGGTTAGGATTTA
* *
70688 TTTTTTGAATAA-GCATACGAATTAGATATCATGCGGTTAGGATTTC
1 TTTTTTGAATAATGCATACGAACTAGATATCATGCGGTTAGGATTTA
70734 TTTTTGTGAATAA
1 TTTTT-TGAATAA
70747 CAAAGCATGG
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
45 27 0.51
46 10 0.19
47 16 0.30
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (47 bp):
TTTTTTGAATAATGCATACGAACTAGATATCATGCGGTTAGGATTTA
Found at i:79790 original size:18 final size:18
Alignment explanation
Indices: 79767--79858 Score: 72
Period size: 18 Copynumber: 5.4 Consensus size: 18
79757 ATATTTCGCT
79767 TGAAAAAGAAAAAAATGA
1 TGAAAAAGAAAAAAATGA
*
79785 TGAAAAAGAGAAAAA-GA
1 TGAAAAAGAAAAAAATGA
*
79802 -GAAAAATAAAAAAA-GA
1 TGAAAAAGAAAAAAATGA
* *
79818 AGAAAATG--AAAAATGA
1 TGAAAAAGAAAAAAATGA
*
79834 --AAAAAAAATGAAAAATGA
1 TGAAAAAGAA--AAAAATGA
79852 TGAAAAA
1 TGAAAAA
79859 AATGTAAAGA
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
14 4 0.07
15 5 0.08
16 16 0.27
17 7 0.12
18 22 0.37
20 5 0.08
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.10
Consensus pattern (18 bp):
TGAAAAAGAAAAAAATGA
Found at i:79798 original size:7 final size:8
Alignment explanation
Indices: 79768--79823 Score: 58
Period size: 8 Copynumber: 6.6 Consensus size: 8
79758 TATTTCGCTT
79768 GAAAAAGA
1 GAAAAAGA
*
79776 AAAAAATGA
1 GAAAAA-GA
79785 TGAAAAAGA
1 -GAAAAAGA
79794 GAAAAAGA
1 GAAAAAGA
*
79802 GAAAAATA
1 GAAAAAGA
*
79810 AAAAAAGAA
1 GAAAAAG-A
79819 GAAAA
1 GAAAA
79824 TGAAAAATGA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
8 25 0.64
9 9 0.23
10 5 0.13
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (8 bp):
GAAAAAGA
Found at i:79823 original size:24 final size:24
Alignment explanation
Indices: 79784--79953 Score: 73
Period size: 23 Copynumber: 7.4 Consensus size: 24
79774 GAAAAAAATG
* *
79784 ATGAAAAAGAGAA-AAAGAGAAAA
1 ATGAAAAAAAGAAGAAAAAGAAAA
*
79807 AT-AAAAAAAGAAGAAAATGAAAA
1 ATGAAAAAAAGAAGAAAAAGAAAA
79830 ATGAAAAAAA-AATGAAAAATG----
1 ATGAAAAAAAGAA-GAAAAA-GAAAA
79851 ATGAAAAAAATGTAAAGAAAAA-AAAA
1 ATGAAAAAAA-G--AAGAAAAAGAAAA
* ** *
79877 A-GAAAAATAG-A-AAATGGGAAA
1 ATGAAAAAAAGAAGAAAAAGAAAA
* *
79898 ATGGAAGAAAA-AA-TAAAAGAAAA
1 AT-GAAAAAAAGAAGAAAAAGAAAA
**
79921 ATGATGAAAA-AAGAAAAAGAAAA
1 ATGAAAAAAAGAAGAAAAAGAAAA
79944 A-GAAATAAAA
1 ATGAAA-AAAA
79954 AGGGGGGTTC
Statistics
Matches: 111, Mismatches: 18, Indels: 36
0.67 0.11 0.22
Matches are distributed among these distances:
20 3 0.03
21 15 0.14
22 20 0.18
23 43 0.39
24 19 0.17
25 10 0.09
26 1 0.01
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.09
Consensus pattern (24 bp):
ATGAAAAAAAGAAGAAAAAGAAAA
Found at i:79828 original size:23 final size:24
Alignment explanation
Indices: 79802--79847 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
79792 GAGAAAAAGA
79802 GAAAAAT-AAAAAAAGAA-GAAAAT
1 GAAAAATGAAAAAAA-AATGAAAAT
79825 GAAAAATGAAAAAAAAATGAAAA
1 GAAAAATGAAAAAAAAATGAAAA
79848 ATGATGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (24 bp):
GAAAAATGAAAAAAAAATGAAAAT
Found at i:79859 original size:18 final size:18
Alignment explanation
Indices: 79777--79954 Score: 75
Period size: 16 Copynumber: 10.3 Consensus size: 18
79767 TGAAAAAGAA
*
79777 AAAAATGATGAAAAAGA-G
1 AAAAATGAAGAAAAA-ATG
79795 AAAAA-G-AG-AAAAAT-
1 AAAAATGAAGAAAAAATG
79809 AAAAA--AAGAAGAAAATG
1 AAAAATGAAGAA-AAAATG
*
79826 AAAAATGAAAAAAAAATG
1 AAAAATGAAGAAAAAATG
*
79844 AAAAATGATGAAAAAAATG
1 AAAAATGAAG-AAAAAATG
* * *
79863 -TAAA-GAAAAAAAAAAG
1 AAAAATGAAGAAAAAATG
79879 AAAAAT--AG--AAAATGG
1 AAAAATGAAGAAAAAAT-G
*
79894 GAAAATGGAAGAAAAAATAAAAG
1 AAAAAT-GAAGAAAAAAT----G
*
79917 AAAAATGATGAAAAAA-G
1 AAAAATGAAGAAAAAATG
79934 AAAAA-GAA-AAAGAAAT-
1 AAAAATGAAGAAA-AAATG
79950 AAAAA
1 AAAAA
79955 GGGGGGTTCA
Statistics
Matches: 123, Mismatches: 16, Indels: 44
0.67 0.09 0.24
Matches are distributed among these distances:
14 12 0.10
15 14 0.11
16 24 0.20
17 17 0.14
18 24 0.20
19 12 0.10
20 5 0.04
22 9 0.07
23 6 0.05
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.10
Consensus pattern (18 bp):
AAAAATGAAGAAAAAATG
Found at i:79889 original size:67 final size:70
Alignment explanation
Indices: 79777--79954 Score: 181
Period size: 67 Copynumber: 2.5 Consensus size: 70
79767 TGAAAAAGAA
* * *
79777 AAAAATGATGAAAAAGAGAAAAAGAGAAAAATAAAAAAAGAAGAAAAT-GAAAA-ATGAAAAAA-
1 AAAAATGATGAAAAAAAGAAAAAGAGAAAAATAAAAAAAAAAGAAAATGGAAAAGAAGAAAAAAT
*
79839 AAATG
66 AAAAG
*
79844 AAAAATGATGAAAAAAATG-TAAAGA-AAAAA-AAAAGAAAAATAGAAAATGGGAAAATGGAAGA
1 AAAAATGATGAAAAAAA-GAAAAAGAGAAAAATAAAA-AAAAA-AGAAAAT-GGAAAA--GAAGA
79906 AAAAATAAAAG
60 AAAAATAAAAG
*
79917 AAAAATGATG-AAAAAAGAAAAAGAAAAAGAAATAAAAA
1 AAAAATGATGAAAAAAAGAAAAAG-AGAA-AAATAAAAA
79955 GGGGGGTTCA
Statistics
Matches: 91, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
65 4 0.04
66 9 0.10
67 28 0.31
68 1 0.01
69 5 0.05
71 1 0.01
72 18 0.20
73 15 0.16
74 2 0.02
75 4 0.04
76 4 0.04
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.10
Consensus pattern (70 bp):
AAAAATGATGAAAAAAAGAAAAAGAGAAAAATAAAAAAAAAAGAAAATGGAAAAGAAGAAAAAAT
AAAAG
Found at i:81380 original size:55 final size:55
Alignment explanation
Indices: 81320--81679 Score: 353
Period size: 55 Copynumber: 6.6 Consensus size: 55
81310 TTTATGAAGA
* * *
81320 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGAACCTGTTTTATGAAGATTTT
1 TCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACCCGTTTTATGAAGATTGT
* ** * *
81375 TCGAGTTCTATACTCCCTGAATAAATAGGGAGTGAATCCGTTTGT-TGAAGATTGT
1 TCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACCCGTTT-TATGAAGATTGT
* * *
81430 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGTGGACCCGTTTGT-TGAAGATTGT
1 TCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACCCGTTT-TATGAAGATTGT
* * *
81485 TCGAGTTCTATACTCTCTAAAGGAATAGGGAGCGGACCCGTTTTAT-AAAATTGT
1 TCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACCCGTTTTATGAAGATTGT
* *
81539 TCGAGTTCTATAC-CCCATGAACGAATAGGGAGCGAACCCG-TTTATTGAAGATTGT
1 TCGAGTTCTATACTCTC-TGAAGGAATAGGGAGCGAACCCGTTTTA-TGAAGATTGT
* * * * * *
81594 TTGAG-TCTTATACTC-CTTCAATGAATAGGGAGC-AGACACATTTGT-TAAAGATTGT
1 TCGAGTTC-TATACTCTC-TGAAGGAATAGGGAGCGA-ACCCGTTT-TATGAAGATTGT
* *
81649 TCGAG-TCTTATACTCCCTGAAAGAATAGGGA
1 TCGAGTTC-TATACTCTCTGAAGGAATAGGGA
81680 ACGGACTCAT
Statistics
Matches: 261, Mismatches: 33, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
53 6 0.02
54 45 0.17
55 204 0.78
56 5 0.02
57 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (55 bp):
TCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACCCGTTTTATGAAGATTGT
Found at i:81593 original size:164 final size:165
Alignment explanation
Indices: 81320--81685 Score: 447
Period size: 164 Copynumber: 2.2 Consensus size: 165
81310 TTTATGAAGA
* * * * * *
81320 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGAACCTGTTTTATGAAGATTTTTCGAGTTCTA
1 TCGAGTTCTATACTCTCTAAAGGAATAGGGAGCGGACCCGTTTTATGAAAATTGTTCGAGTTCTA
* * * *
81385 TACTCCCTGAATAAATAGGGAGTGAATCCGTTTGTTGAAGATTGTTCGAGT-TCTATACT-CTCT
66 TACTCCCTGAACAAATAGGGAGCGAACCCGTTTATTGAAGATTGTTCGAGTCT-TATACTCCT-T
* ** * * *
81448 GAAGGAATAGAGAGTGGACCCGTTTGTTGAAGATTGT
129 CAAGGAATAGAGAGCAGACACATTTGTTAAAGATTGT
81485 TCGAGTTCTATACTCTCTAAAGGAATAGGGAGCGGACCCGTTTTAT-AAAATTGTTCGAGTTCTA
1 TCGAGTTCTATACTCTCTAAAGGAATAGGGAGCGGACCCGTTTTATGAAAATTGTTCGAGTTCTA
* *
81549 TAC-CCCATGAACGAATAGGGAGCGAACCCGTTTATTGAAGATTGTTTGAGTCTTATACTCCTTC
66 TACTCCC-TGAACAAATAGGGAGCGAACCCGTTTATTGAAGATTGTTCGAGTCTTATACTCCTTC
* *
81613 AATGAATAGGGAGCAGACACATTTGTTAAAGATTGT
130 AAGGAATAGAGAGCAGACACATTTGTTAAAGATTGT
* *
81649 TCGAG-TCTTATACTCCCTGAAA-GAATAGGGAACGGAC
1 TCGAGTTC-TATACTCTCT-AAAGGAATAGGGAGCGGAC
81686 TCATCATTTG
Statistics
Matches: 174, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
163 5 0.03
164 121 0.70
165 48 0.28
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.31
Consensus pattern (165 bp):
TCGAGTTCTATACTCTCTAAAGGAATAGGGAGCGGACCCGTTTTATGAAAATTGTTCGAGTTCTA
TACTCCCTGAACAAATAGGGAGCGAACCCGTTTATTGAAGATTGTTCGAGTCTTATACTCCTTCA
AGGAATAGAGAGCAGACACATTTGTTAAAGATTGT
Found at i:83560 original size:199 final size:197
Alignment explanation
Indices: 82893--83716 Score: 939
Period size: 200 Copynumber: 4.1 Consensus size: 197
82883 TTTTACCCAA
* * * *
82893 CGACACTTTTGAATTTTGTGTCGATACTTTTATCCAGAATGAATTTCC-AAAATGGTGAAAACAT
1 CGACACTTTT-AAATTTGTGTCGATACTTTTGTCCAGAATGAA-TGCCTAAAATGGTGAACACAT
82957 AAAGTGTCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTA
64 AAAGTGTCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTA
* ** * ** * * *
83022 ATAGGTAAATTTACAATGTA-ATCGGTATAACTATACCGGTTTTATGAGAGAACAAGTCCACATA
129 ATAGGTAATTTTGTAATGTACA--GGTATAAATATACCGGTTTTATTTGAGAATATGTTCACATA
83086 ATGTAT
192 ATGTAT
* ** * * * *
83092 CTACACTTATGGAATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCCTAAAAGGGTGCACCCAT
1 CGACACTT-TTAAATTTGTGTCGATACT-TTTGTCCAGAATGAATGCCTAAAATGGTGAACACAT
* * *
83157 AAAGTGTCGATACATTTTTTAAAAGTATCGATCCCAGAGACATCGAAACCCATAATTATAATGTA
64 AAAGTGTCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTA
* * * *
83222 ATAGGTAATTTTGTAATGTAACTGTTATAAATATACTGGTTTTATATT-AGAATAGGTAT-ACAT
129 ATAGGTAATTTTGTAATGT-ACAGGTATAAATATACCGGTTTTAT-TTGAGAATATGT-TCACAT
83285 AATGTAT
191 AATGTAT
* * * *
83292 CGAAACATTTTAAATTAGTGTCGATACTTTTTGTCCAAAATGAATGCTTAAAATGGTGAACACAT
1 CGACAC-TTTTAAATTTGTGTCGATAC-TTTTGTCCAGAATGAATGCCTAAAATGGTGAACACAT
* * * *
83357 AAAGTGTTGATACATTTTTAAAAAGTGTCGATCCCAGAGACATCG-AACCCATAATTATAATGTA
64 AAAGTGTCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTA
* *
83421 ATAGGTAATTTTGTAATG-ACAGGTATAAATATACCGTTTTTATTTGAGAATATGTTTACATAAT
129 ATAGGTAATTTTGTAATGTACAGGTATAAATATACCGGTTTTATTTGAGAATATGTTCACATAAT
83485 GTAT
194 GTAT
* * * *
83489 CGACACTTTTTAATTATGTGTCGATACATTTTGTCCAGAATGAATGCCGAAAAAGTGGTGCACGC
1 CGACACTTTTAAATT-TGTGTCGATAC-TTTTGTCCAGAATGAATGCC-TAAAA-TGGTGAACAC
* * *
83554 ATAAAGTGTCGATACATTTATAAACAGTATCGA-CCCATAAACATCGAAACCCATGATTATAATG
62 ATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATG
* * * * *
83618 CAATAGGTAATTTT-TCAATGTAACCGATATAAATATACCGGTTTTA--TGAGAAAATAGGTCAG
127 TAATAGGTAATTTTGT-AATGT-ACAGGTATAAATATACCGGTTTTATTTGAGAATAT-GTTCA-
*
83680 CATAAAGTAT
188 CATAATGTAT
*
83690 CGACAATTGTTAAATTTGTGTCGATAC
1 CGACACTT-TTAAATTTGTGTCGATAC
83717 CATTTTAAAA
Statistics
Matches: 533, Mismatches: 71, Indels: 40
0.83 0.11 0.06
Matches are distributed among these distances:
196 11 0.02
197 73 0.14
198 16 0.03
199 140 0.26
200 235 0.44
201 52 0.10
202 6 0.01
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (197 bp):
CGACACTTTTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGCCTAAAATGGTGAACACATAA
AGTGTCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAAT
AGGTAATTTTGTAATGTACAGGTATAAATATACCGGTTTTATTTGAGAATATGTTCACATAATGT
AT
Found at i:83692 original size:398 final size:397
Alignment explanation
Indices: 82910--83716 Score: 1053
Period size: 398 Copynumber: 2.0 Consensus size: 397
82900 TTTGAATTTT
*
82910 GTGTCGATACTTTTATCCAGAATGAATTTCCAAAATGGTGAAAACATAAAGTGTCGATACATTTA
1 GTGTCGATACTTTTATCCAAAATGAATTT-CAAAATGGTGAAAACATAAAGTGTCGATACATTTA
82975 TAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATG
65 TAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATG
* *
83040 TAATCGGTATAACTATACCGGTTTTATGAGAGAACAAGTCCACATAATGTATCTACACTTATGGA
130 TAA-CGGTATAAATATACCGGTTTTATGAGAGAACAAGTCCACATAATGTATCGACACTTATGGA
*
83105 ATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCCTAAAAGGGTGCACCCATAAAGTGTCGATAC
194 ATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCCAAAAAGGGTGCACCCATAAAGTGTCGATAC
* * *
83170 ATTTTTTAAAAGTATCGATCCCAGAGACATCGAAACCCATAATTATAATGTAATAGGTAATTTTG
259 ATTTTATAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGCAATAGGTAATTTTG
* * * * * *
83235 TAATGTAACTGTTATAAATATACTGGTTTTATATTAGAATAGGTATACATAATGTATCGAAACAT
324 TAATGTAACCGATATAAATATACCGGTTTTATATGAAAATAGGTATACATAAAGTATCGAAA-AT
83300 T-TTAAATTA
388 TGTTAAATTA
* * *
83309 GTGTCGATACTTTTTGTCCAAAATGAATGCTT-AAAATGGTGAACACATAAAGTGTTGATACATT
1 GTGTCGATAC-TTTTATCCAAAATGAAT--TTCAAAATGGTGAAAACATAAAGTGTCGATACATT
* * * * **
83373 TTTAAAAAGTGTCGATCCCAGAGACATCG-AACCCATAATTATAATGTAATAGGTAATTTTGTAA
63 TATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAA
* ** * * ** *
83437 TG--ACAGGTATAAATATACCGTTTTTATTTGAGAATATGTTTACATAATGTATCGACACTT-TT
128 TGTAAC-GGTATAAATATACCGGTTTTATGAGAGAACAAGTCCACATAATGTATCGACACTTATG
* * *
83499 TAATTATGTGTCGATACAT-TTTGTCCAGAATGAATGCCGAAAAAGTGGTGCACGCATAAAGTGT
192 GAATT-TGTGTCGATAC-TGTTTGTCCAGAAGGAATGCC-AAAAAG-GGTGCACCCATAAAGTGT
* *
83563 CGATACA-TTTATAAACAGTATCGA-CCCATAAACATCGAAACCCATGATTATAATGCAATAGGT
253 CGATACATTTTATAAA-AGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGCAATAGGT
*
83626 AATTTT-TCAATGTAACCGATATAAATATACCGGTTTTATGA-GAAAATAGGTCA-GCATAAAGT
317 AATTTTGT-AATGTAACCGATATAAATATACCGGTTTTAT-ATGAAAATAGGT-ATACATAAAGT
* *
83688 ATCGACAATTGTTAAATTT
379 ATCGAAAATTGTTAAATTA
83707 GTGTCGATAC
1 GTGTCGATAC
83717 CATTTTAAAA
Statistics
Matches: 357, Mismatches: 38, Indels: 27
0.85 0.09 0.06
Matches are distributed among these distances:
396 6 0.02
397 80 0.22
398 120 0.34
399 78 0.22
400 71 0.20
402 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (397 bp):
GTGTCGATACTTTTATCCAAAATGAATTTCAAAATGGTGAAAACATAAAGTGTCGATACATTTAT
AAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGT
AACGGTATAAATATACCGGTTTTATGAGAGAACAAGTCCACATAATGTATCGACACTTATGGAAT
TTGTGTCGATACTGTTTGTCCAGAAGGAATGCCAAAAAGGGTGCACCCATAAAGTGTCGATACAT
TTTATAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGCAATAGGTAATTTTGTA
ATGTAACCGATATAAATATACCGGTTTTATATGAAAATAGGTATACATAAAGTATCGAAAATTGT
TAAATTA
Found at i:85220 original size:3 final size:3
Alignment explanation
Indices: 85196--85258 Score: 81
Period size: 3 Copynumber: 21.0 Consensus size: 3
85186 GGTCAATAAA
* * * *
85196 GAT GAA GAT AAT GAT GAA GAT GAT GAT GAT GAC GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
85244 GAT GAT TAT GAT GAT
1 GAT GAT GAT GAT GAT
85259 CCAAGAAAGT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.38, C:0.02, G:0.30, T:0.30
Consensus pattern (3 bp):
GAT
Found at i:88308 original size:199 final size:199
Alignment explanation
Indices: 87951--89115 Score: 1380
Period size: 199 Copynumber: 5.8 Consensus size: 199
87941 TAAAGTTTAC
* * * *
87951 CATAAAGTGTCGATACATGTTTAAAAAGTATCGATTCCAAAAACATCGAAACCTAAAATTATAAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
* *
88016 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTTTGAGAAAAT-AGAT-ATA
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAGAATAAG-TCA-A
* * ** * *
88079 CACAATGTATCAACACTTGTGGAATTTGTGTCGA-ACTTTTTGTTCAAAATGAATGCCAAACGTG
129 CATAATGTATCGACACTT-TTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAACGTG
88143 GTGCACG
193 GTGCACG
*
88150 CATACAA-TGTTGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAA
1 CATA-AAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAA
* ** * * * *
88214 TGTAATAGGTAATTTTGTAATATAACCGGTATAAATATATCGATTTTATGTGAGAATAAGTCTAC
65 TGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAGAATAAGTCAAC
* * *
88279 ATAATGTGTCGACACTTTTAAATTTTGTGTCGATACTTTTTGTCCAGAATGAAAGCCCAAA-ATG
130 ATAATGTATCGACACTTTTAAA-TTTGTGTCGATACTTTTTGTCCAGAATGAATG-CCAAACGTG
*
88343 GTGAACG
193 GTGCACG
* * *
88350 CATAAAGTGTCGATACATTTATAAAAAGTATCAATCCCAGAAACATCGAAACCCATAATTATAAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
* * * * *
88415 GTAATAGGTAAATTTACAATGTAACCGATATAACTATACCAATTTTATGAGAGAATAGGTCTACA
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAGAATAAGTCAACA
* ** * * *
88480 TAATGTATCGACAGTTGTGGAATTTGTGTCGATACTTTTTGTCTAAAATGAATGCCAAAAG-GGT
131 TAATGTATCGACACTT-TTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAACGTGG-
88544 TGCACG
194 TGCACG
* *
88550 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACTCATATTTATAAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
* * * * * * * * *
88615 GTAATAGTTAAATTTATAATGTATCCGGTATAAATTTACCGGTTTTATAAGAAAATAGGTGAACA
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAGAATAAGTCAACA
* *
88680 TAATGTATCGACACGTTTTAGATTTGTGTCGATA-TATTTTGTCCAGAATGAATGCCAAACGTTG
131 TAATGTATCGACAC-TTTTAAATTTGTGTCGATACT-TTTTGTCCAGAATGAATGCCAAACGTGG
*
88744 TGCAGG
194 TGCACG
* * * ** * *
88750 CAAAAACTGTCGATACA-TTTGAAATTGTATTGATCCCAAAAACATCGAAACCGATAATTATAAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
* * * * * * * *
88814 GTGATAGGTAAATTTACAATGTAACCTGTATAAATTTACTGGTTTTATGAGAAAATAGGTGAACA
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAGAATAAGTCAACA
* * * *
88879 TAATGTATTGACACGTTTTAAATTTGTGTCGATACATTTTGTCCAGAATGAATGTCAAACGGGGT
131 TAATGTATCGACAC-TTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAACGTGGT
**
88944 GCAAA
195 GCACG
* * ** * * * *
88949 CAAAAAGTGTCGATACA-TTTGAAATTGTATTGATCCCAAAAATATCGAAACCGATAATTATAAC
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
* * * *
89013 GTAATAGGTAAATTTACAATGTAACCGGTTTACATATA-CTATTTTATGAGAGAAT-AGATCAAT
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAGAATAAG-TCAAC
89076 ATAATGTATCGACACTTTTAAATTTGTGTCGATACTTTTT
130 ATAATGTATCGACACTTTTAAATTTGTGTCGATACTTTTT
89116 AAGTAATGCA
Statistics
Matches: 837, Mismatches: 114, Indels: 32
0.85 0.12 0.03
Matches are distributed among these distances:
197 25 0.03
198 33 0.04
199 395 0.47
200 373 0.45
201 11 0.01
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (199 bp):
CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAGAATAAGTCAACA
TAATGTATCGACACTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAACGTGGTG
CACG
Found at i:88967 original size:399 final size:395
Alignment explanation
Indices: 87958--89115 Score: 1441
Period size: 399 Copynumber: 2.9 Consensus size: 395
87948 TACCATAAAG
* * *
87958 TGTCGATACATGTTTAAAAAGTATCGATTCCAAAAACATCGAAACCTAAAATTATAATGTAATAG
1 TGTCGATACAT-TTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAG
* * *
88023 GTAAATTTACAATGTAACCGGTATAAATATACCGATTTTTTGAGAAAATAGATATACACAATGTA
65 GTAAATTTACAATGTAACC-GTATAAATATACCGATTTTATGAGAAAATAGGTA-ACATAATGTA
* * *
88088 TCAACAC-TTGTGGAATTTGTGTCGA-ACTTTTTGTTCAAAATGAATGCCAAACGTGGTGCACGC
128 TCGACACGTTGTGGAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCAAACGGGGTGCACGC
* *
88151 ATACAA-TGTTGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
193 A-AAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAA-CCATAATTATAAT
* * * * * *
88215 GTAATAGGTAATTTTGTAATATAACCGGTATAAATATATCGATTTTATGTGAGAATAAGTCTACA
256 GTAATAGGTAAATTTATAATGTAACCGGTATAAATATA-CGATTTTATGAGAGAATAGGTCAACA
*
88280 TAATGTGTCGACACTTTTAAATTTTGTGTCGATACTTTTTGTCCAGAATGAAAGCCCAAAATGGT
320 TAATGTATCGACACTTTTAAA-TTTGTGTCGATACTTTTTGTCCAGAATGAAAGCCCAAAATGGT
* *
88345 GAACGCATAAAG
384 GAACGCAAAAAC
* *
88357 TGTCGATACATTTATAAAAAGTATCAATCCCAGAAACATCGAAACCCATAATTATAATGTAATAG
1 TGTCGATACATTT-TAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAG
* * * *
88422 GTAAATTTACAATGTAACCGATATAACTATACCAATTTTATGAGAGAATAGGTCTACATAATGTA
65 GTAAATTTACAATGTAACCG-TATAAATATACCGATTTTATGAGAAAATAGGT-AACATAATGTA
* * *
88487 TCGACA-GTTGTGGAATTTGTGTCGATACTTTTTGTCTAAAATGAATGCCAAAAGGGTTGCACGC
128 TCGACACGTTGTGGAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCAAACGGGGTGCACGC
* *
88551 ATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACTCATATTTATAATG
193 AAAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAAC-CATAATTATAATG
* * * * * * *
88616 TAATAGTTAAATTTATAATGTATCCGGTATAAATTTACCGGTTTTATAAGAAAATAGGTGAACAT
257 TAATAGGTAAATTTATAATGTAACCGGTATAAATATA-CGATTTTATGAGAGAATAGGTCAACAT
* * * *
88681 AATGTATCGACACGTTTTAGATTTGTGTCGATA-TATTTTGTCCAGAATGAATG-CCAAACGTTG
321 AATGTATCGACAC-TTTTAAATTTGTGTCGATACT-TTTTGTCCAGAATGAAAGCCCAAA-ATGG
* *
88744 TGCAGGCAAAAAC
383 TGAACGCAAAAAC
* ** * * *
88757 TGTCGATACATTTGAAATTGTATTGATCCCAAAAACATCGAAACCGATAATTATAATGTGATAGG
1 TGTCGATACATTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGG
* * *
88822 TAAATTTACAATGTAACCTGTATAAATTTACTGGTTTTATGAGAAAATAGGTGAACATAATGTAT
66 TAAATTTACAATGTAACC-GTATAAATATACCGATTTTATGAGAAAATAGGT-AACATAATGTAT
* ** * * * **
88887 TGACACGTT-TTAAATTTGTGTCGATACATTTTGTCCAGAATGAATGTCAAACGGGGTGCAAACA
129 CGACACGTTGTGGAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCAAACGGGGTGCACGCA
* ** * * *
88951 AAAAGTGTCGATACA-TTTGAAATTGTATTGATCCCAAAAATATCGAAACCGATAATTATAACGT
194 AAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACC-ATAATTATAATGT
* * * * * *
89015 AATAGGTAAATTTACAATGTAACCGGTTTACATATACTATTTTATGAGAGAATAGATCAATATAA
258 AATAGGTAAATTTATAATGTAACCGGTATAAATATACGATTTTATGAGAGAATAGGTCAACATAA
89080 TGTATCGACACTTTTAAATTTGTGTCGATACTTTTT
323 TGTATCGACACTTTTAAATTTGTGTCGATACTTTTT
89116 AAGTAATGCA
Statistics
Matches: 651, Mismatches: 94, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
396 22 0.03
397 35 0.05
398 73 0.11
399 306 0.47
400 209 0.32
401 6 0.01
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (395 bp):
TGTCGATACATTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGG
TAAATTTACAATGTAACCGTATAAATATACCGATTTTATGAGAAAATAGGTAACATAATGTATCG
ACACGTTGTGGAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCAAACGGGGTGCACGCAAA
AAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCATAATTATAATGTAAT
AGGTAAATTTATAATGTAACCGGTATAAATATACGATTTTATGAGAGAATAGGTCAACATAATGT
ATCGACACTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAAAGCCCAAAATGGTGAACGCA
AAAAC
Found at i:90748 original size:19 final size:19
Alignment explanation
Indices: 90724--90772 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
90714 AATGTAGGGT
90724 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
** *
90743 TAATTTTACATACGATTTA
1 TAATTTTGTATAAGATTTA
90762 TAATTTTGTAT
1 TAATTTTGTAT
90773 GTGAATGTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.53
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:93757 original size:199 final size:197
Alignment explanation
Indices: 93255--93967 Score: 757
Period size: 201 Copynumber: 3.6 Consensus size: 197
93245 TAAATATGTA
*
93255 TCGATACATTT-TCTAAAAGTATCGA-CCCAAAAAACATCGAAACCAATAATTATAATGTAATAG
1 TCGATACATTTAT-TAAAAGTATCGATCCC-AAAAACATCGAAACCGATAATTATAATGTAATAG
* * * * * * *
93318 GTAAATTAACAATGCAACCGGTATAAATATAACAG-TTAATTAGAAAACAGGTCAACATAATGTA
64 GTAAATTTACAATGTAACCGGTATAAATAT-ACCGTTTTATGAGAAAATAGGTCAGCATAATGTA
* *
93382 TCGACACTTGTGT-AATTTGTGCCGATACTTATTGTCCAGAATGAATGCCCAAACGAGGTGCACG
128 TCGACACTTGT-TAAATTTGTGTCGATACTT-TTGTCCAGAATGAATG--CAAACGAGGTGCACA
93446 CATAAAGTG
189 CATAAAGTG
* * *** * *
93455 TCGATACATTTATTAAAAGTATCGATCTCAATAAA-ATCGATACTTTTAAATT-TGTATATAATA
1 TCGATACATTTATTAAAAGTATCGATCCCAA-AAACATCGAAACCGAT-AATTAT-AATGTAATA
* * *
93518 TGTAAATTTACAATGTAACCGGTATAAATATACCGTTTTATGAAAAAATAGGTCAGCATAAAGTA
63 GGTAAATTTACAATGTAACCGGTATAAATATACCGTTTTATGAGAAAATAGGTCAGCATAATGTA
* * * * * *
93583 TCGGCACTTGTTAAATTTATGTTGCTACATTTTGTCCATAATGAATGTCAAACG-GTTGCACACA
128 TCGACACTTGTTAAATTTGTGTCGATAC-TTTTGTCCAGAATGAATG-CAAACGAGGTGCACACA
93647 TAAAGTG
191 TAAAGTG
* * * * * *
93654 TCGATACATTTATTAAAAGTATCAATCCCAAAAACATCAAAATCGATCATTACAATGTGATAGGT
1 TCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGT
* * * * *
93719 AAATTTACAATGTACCCGAT-TGGAATATACCGGTTTTATGAGAAAATAGGTCTGAATAATGTAT
66 AAATTTACAATGTAACCGGTAT-AAATATACC-GTTTTATGAGAAAATAGGTCAGCATAATGTAT
* * * *
93783 CGACACTTTTTAAGTTTGTGTCGATACTTTTTTCCAGAATGAATGCCAACGAGGTGCACACATAA
129 CGACACTTGTTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGCAAACGAGGTGCACACATAA
93848 AGTG
194 AGTG
* *
93852 TCGATACATTTCAATT---TGTATCGAT-CCAAAAAAATCGAAACCGATAATTATAATGTAATAG
1 TCGATACATTT--ATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATAG
* * * * *
93913 GTAAATTTACAATGTTATCGGTATAAATATACCGGTTTACTTATAAAATAGGTCA
64 GTAAATTTACAATGTAACCGGTATAAATATACCGTTTTA-TGAGAAAATAGGTCA
93968 ATATAAGCGC
Statistics
Matches: 422, Mismatches: 74, Indels: 38
0.79 0.14 0.07
Matches are distributed among these distances:
195 5 0.01
196 68 0.16
197 14 0.03
198 83 0.20
199 99 0.23
200 47 0.11
201 104 0.25
202 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (197 bp):
TCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGT
AAATTTACAATGTAACCGGTATAAATATACCGTTTTATGAGAAAATAGGTCAGCATAATGTATCG
ACACTTGTTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGCAAACGAGGTGCACACATAAAG
TG
Found at i:94067 original size:87 final size:87
Alignment explanation
Indices: 93968--94217 Score: 464
Period size: 87 Copynumber: 2.9 Consensus size: 87
93958 AAATAGGTCA
93968 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
94033 CCGGTTAAATGCCTATTTTATT
66 CCGGTTAAATGCCTATTTTATT
* *
94055 ATATAAGTGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGCACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
94120 CCGGTTAAATGCCTATTTTATT
66 CCGGTTAAATGCCTATTTTATT
*
94142 ATATAAGCGCTACCTATTACATTATATAAGCGATACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
*
94207 CCTGTTAAATG
66 CCGGTTAAATG
94218 ATATAACATT
Statistics
Matches: 157, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 157 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGGTTAAATGCCTATTTTATT
Found at i:94102 original size:23 final size:23
Alignment explanation
Indices: 94052--94096 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
94042 TGCCTATTTT
* *
94052 ATTATATAAGTGCTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
94075 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
94097 TGTTATTGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:94189 original size:23 final size:23
Alignment explanation
Indices: 94139--94183 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
94129 TGCCTATTTT
* *
94139 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGATACCTAATAC
94162 ATTATATAAGCGATACCTAATA
1 ATTATATAAGCGATACCTAATA
94184 TGTTATTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (23 bp):
ATTATATAAGCGATACCTAATAC
Found at i:96460 original size:3 final size:3
Alignment explanation
Indices: 96452--96483 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
96442 ATTAAGCTTT
96452 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
96484 GTAATTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:96576 original size:26 final size:26
Alignment explanation
Indices: 96544--96595 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
96534 ACTTAAATTT
96544 AGAGTATATTATGTACTTATGAATGA
1 AGAGTATATTATGTACTTATGAATGA
96570 AGAGTATATTATGTACTTATGAATGA
1 AGAGTATATTATGTACTTATGAATGA
96596 GATAGATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.38
Consensus pattern (26 bp):
AGAGTATATTATGTACTTATGAATGA
Found at i:97726 original size:58 final size:57
Alignment explanation
Indices: 97656--97842 Score: 180
Period size: 58 Copynumber: 3.2 Consensus size: 57
97646 ATACCTTAAC
* * *
97656 AATCAATCTTTAACTTCCAACACAAAATTGTAAATCATAAAATTAAAGAACAATCGTTG
1 AATC-ATCTTTAACTTCCAACACAAAATTGT-AATTATAAAATTAAAGAACAATAGATG
** * * *
97715 AATCATCTTTAACTTATATACAGCACAATATTTTTATTATAAAATTGTAA-AACAATAGATG
1 AATCATCTTTAACTTCCA-ACA-CA-AA-ATTGTAATTATAAAATT-AAAGAACAATAGATG
* **
97776 AATCATCTTTAACTTCGAACACAATAA-TGCTAATTATAAAATTGTAGAACAATAGATG
1 AATCATCTTTAACTTCCAACACAA-AATTG-TAATTATAAAATTAAAGAACAATAGATG
97834 AATCATCTT
1 AATCATCTT
97843 GTCAAGCCCT
Statistics
Matches: 106, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
57 2 0.02
58 46 0.43
59 10 0.09
60 5 0.05
61 37 0.35
62 6 0.06
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.33
Consensus pattern (57 bp):
AATCATCTTTAACTTCCAACACAAAATTGTAATTATAAAATTAAAGAACAATAGATG
Found at i:98239 original size:33 final size:33
Alignment explanation
Indices: 98113--98240 Score: 143
Period size: 33 Copynumber: 3.8 Consensus size: 33
98103 AAATCTCTTG
* * * *
98113 ATTCCCATG-TTACGCTTTTAAGTATCA-ACCTT
1 ATTCCCAAGATTACACTTGTAAGTATCACA-CTA
* *
98145 ATTCTCAAGATTACACACTTGTAAGTATAACACTA
1 ATTCCCAAGATT--ACACTTGTAAGTATCACACTA
*
98180 ATTTCCAAGATTACACTTGTAAGTATCACACTA
1 ATTCCCAAGATTACACTTGTAAGTATCACACTA
*
98213 ATTCCCTAGATTACACTTGTAAGTATCA
1 ATTCCCAAGATTACACTTGTAAGTATCA
98241 ACCTGATGGC
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
32 7 0.09
33 48 0.59
35 25 0.31
36 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (33 bp):
ATTCCCAAGATTACACTTGTAAGTATCACACTA
Found at i:98635 original size:11 final size:11
Alignment explanation
Indices: 98619--98644 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
98609 TAACAAGTTG
98619 AATTCTACTAT
1 AATTCTACTAT
98630 AATTCTACTAT
1 AATTCTACTAT
98641 AATT
1 AATT
98645 AATTTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTCTACTAT
Found at i:99148 original size:33 final size:33
Alignment explanation
Indices: 99101--99166 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
99091 TAATATCTTG
* *
99101 ATTCCCATGCTTACACCT-GTAAGTATCAACCTA
1 ATTCACATGATTACA-CTGGTAAGTATCAACCTA
*
99134 ATTCACATGATTACATTGGTAAGTATCAACCTA
1 ATTCACATGATTACACTGGTAAGTATCAACCTA
99167 GTATAATCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 1 0.03
33 28 0.97
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (33 bp):
ATTCACATGATTACACTGGTAAGTATCAACCTA
Found at i:99445 original size:43 final size:43
Alignment explanation
Indices: 99397--99623 Score: 233
Period size: 43 Copynumber: 5.3 Consensus size: 43
99387 TGGTAACAAA
* ** * *
99397 AAACGCCGCAACAGGTAACGATATATAGCGGCGTTTGTCCAAC
1 AAACGCCGCAATAGGTATTGATATTTAGCGGCGTTTTTCCAAC
* *
99440 AAACGCTGCAATAGGTGTTGATATTTAGCGGCGTTTTTCCAAC
1 AAACGCCGCAATAGGTATTGATATTTAGCGGCGTTTTTCCAAC
* *
99483 AAACGCCGCAATAGGTGTTGAGATTTAGCGGCGTTTTTTCC-AC
1 AAACGCCGCAATAGGTATTGATATTTAGCGGCG-TTTTTCCAAC
* * **
99526 AAACGCCGCAATAGGTATTGAGATTTAGCAGC-TCTTTTTTACAC
1 AAACGCCGCAATAGGTATTGATATTTAGCGGCGT-TTTTCCA-AC
* * * * * * *
99570 AAACACCGCAATATGTCTTGAGATTTTGCGGCATTTTTCCCAC
1 AAACGCCGCAATAGGTATTGATATTTAGCGGCGTTTTTCCAAC
99613 AAACGCCGCAA
1 AAACGCCGCAA
99624 AAGATCTGGT
Statistics
Matches: 157, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 111 0.71
44 40 0.25
45 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
AAACGCCGCAATAGGTATTGATATTTAGCGGCGTTTTTCCAAC
Found at i:99512 original size:86 final size:86
Alignment explanation
Indices: 99422--99623 Score: 246
Period size: 87 Copynumber: 2.3 Consensus size: 86
99412 TAACGATATA
* * * * *
99422 TAGCGGCGTTTGTCCAACAAACGCTGCAATAGGTGTTGATATTTAGCGGCGT-TTTTCCA-ACAA
1 TAGCGGCGTTTTTCC-ACAAACGCCGCAATAGGTATTGAGATTTAGCAGC-TCTTTTCCACACAA
* *
99485 ACGCCGCAATAGGTGTTGAGATT
64 ACACCGCAATAGGTCTTGAGATT
**
99508 TAGCGGCGTTTTTTCCACAAACGCCGCAATAGGTATTGAGATTTAGCAGCTCTTTTTTACACAAA
1 TAGCGGCG-TTTTTCCACAAACGCCGCAATAGGTATTGAGATTTAGCAGCTCTTTTCCACACAAA
*
99573 CACCGCAATATGTCTTGAGATT
65 CACCGCAATAGGTCTTGAGATT
* *
99595 TTGCGGCATTTTTCCCACAAACGCCGCAA
1 TAGCGGCGTTTTT-CCACAAACGCCGCAA
99624 AAGATCTGGT
Statistics
Matches: 100, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
85 1 0.01
86 48 0.48
87 51 0.51
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (86 bp):
TAGCGGCGTTTTTCCACAAACGCCGCAATAGGTATTGAGATTTAGCAGCTCTTTTCCACACAAAC
ACCGCAATAGGTCTTGAGATT
Found at i:102422 original size:41 final size:41
Alignment explanation
Indices: 102370--102709 Score: 378
Period size: 41 Copynumber: 8.2 Consensus size: 41
102360 GTTTACAAAC
*
102370 GCCACTAAAGTACAAGTCTTTAGCGGCGTTTGTATAAAAAT
1 GCCACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAAT
* * *
102411 GCCACTGAAGTACGAGTCTTTAGCGACGTTTGTATAAAAAC
1 GCCACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAAT
* * * * * *
102452 GCCACTGAAGTATGAGTCTATAGCAGCGTTTATATAAAAAC
1 GCCACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAAT
* * * * * *
102493 GCCACTGAATTACAAGTCTTTAGCAGCGTTTGTAAACACAAAC
1 GCCACTAAAGTACGAGTCTTTAGCGGCGTTTGTATA-A-AAAT
*
102536 GCCACTAAAGTACGAGTCGTTAGCGGCGTTTGTATAAAAAT
1 GCCACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAAT
* * *
102577 GCCACTAAA-TAACTAGTTTTTAGCGGCGTTTGTACAAAAAT
1 GCCACTAAAGT-ACGAGTCTTTAGCGGCGTTTGTATAAAAAT
* * * * *
102618 GCCACTAATGAACTCA-TTTTTAGCGGCGTTTGTACAAAAAAT
1 GCCACTAAAGTAC-GAGTCTTTAGCGGCGTTTGTA-TAAAAAT
*
102660 GTCACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAAT
1 GCCACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAAT
*
102701 CCCACTAAA
1 GCCACTAAA
102710 TGATTTTAGG
Statistics
Matches: 254, Mismatches: 38, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
40 1 0.00
41 183 0.72
42 36 0.14
43 34 0.13
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (41 bp):
GCCACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAAT
Found at i:102819 original size:41 final size:42
Alignment explanation
Indices: 102774--102935 Score: 163
Period size: 41 Copynumber: 3.9 Consensus size: 42
102764 GCGTTTATAC
*
102774 AAAAAAACGCCACTATTGATT-ACATTATTGTGGCGTTTGTT
1 AAAAAAACGCCACTATTGATTAACACTATTGTGGCGTTTGTT
* * * ***
102815 AAAAAAATGCCATTATTGATTAAAACTATTACAGCGTTT-TT
1 AAAAAAACGCCACTATTGATTAACACTATTGTGGCGTTTGTT
**
102856 GTAAAAACGCCACTATTGATTAACACTATTGTGGCGTTTGTCT
1 AAAAAAACGCCACTATTGATTAACACTATTGTGGCGTTTGT-T
* * *
102899 --AAAAACGCCACTATTTATTATA-AATATTGCGGCGTTT
1 AAAAAAACGCCACTATTGATTA-ACACTATTGTGGCGTTT
102936 TAAGAATAAA
Statistics
Matches: 99, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
41 84 0.85
42 14 0.14
43 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (42 bp):
AAAAAAACGCCACTATTGATTAACACTATTGTGGCGTTTGTT
Found at i:102934 original size:82 final size:81
Alignment explanation
Indices: 102776--102936 Score: 218
Period size: 82 Copynumber: 2.0 Consensus size: 81
102766 GTTTATACAA
* * *
102776 AAAAACGCCACTATTGATTACATTATTGTGGCGTTTGTTAAAAAAATGCCATTATTGATTAAAAC
1 AAAAACGCCACTATTGATTACACTATTGTGGCGTTTGTT-AAAAAACGCCACTATTGATTAAAAC
102841 TATTACAGCGTTTTTGT
65 TATTACAGCGTTTTTGT
*
102858 AAAAACGCCACTATTGATTAACACTATTGTGGCGTTTGTCT-AAAAACGCCACTATTTATTATAA
1 AAAAACGCCACTATTGATT-ACACTATTGTGGCGTTTGT-TAAAAAACGCCACTATTGATTA-AA
* *
102922 A-TATTGCGGCGTTTT
63 ACTATTACAGCGTTTT
102937 AAGAATAAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
82 48 0.69
83 21 0.30
84 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (81 bp):
AAAAACGCCACTATTGATTACACTATTGTGGCGTTTGTTAAAAAACGCCACTATTGATTAAAACT
ATTACAGCGTTTTTGT
Found at i:102987 original size:42 final size:40
Alignment explanation
Indices: 102848--103136 Score: 178
Period size: 42 Copynumber: 7.0 Consensus size: 40
102838 AACTATTACA
* * * *
102848 GCGTTTTTGTAAAAACGCCACTAT-TGATTAACACTATTGTG
1 GCGTTTTGGTATAAACGCCACTATATG-TTAA-TCTATTGCG
* * * * **
102889 GCG-TTTGTCTAAAAACGCCACTATTTATTATAAATATTGCG
1 GCGTTTTG-GTATAAACGCCACTATATGTTA-ATCTATTGCG
* * *
102930 GCGTTTTAAGAATAAATGCCACTATATGTGTAATCTATTGCG
1 GCGTTTT-GGTATAAACGCCACTATATGT-TAATCTATTGCG
* *
102972 GCGTTTGTGGTATAAACGCCGCTA-AT-TTACCGATCTATTGTG
1 GCGTTT-TGGTATAAACGCCACTATATGTTA---ATCTATTGCG
103014 GCGTTTTGGCTA-AAACGCCACTATATGTTAATCTATTGCG
1 GCGTTTTGG-TATAAACGCCACTATATGTTAATCTATTGCG
* * *
103054 GCGTTTGTGGTATAAACGCCGCTA-AT-TTACCCCTCTATTACG
1 GCGTTT-TGGTATAAACGCCACTATATGTTA---ATCTATTGCG
* * * *
103096 GCGTTTGTTGTAAAAACGCCGCTATATGTCAACTCTATTGC
1 GCGTTT-TGGTATAAACGCCACTATATGTTAA-TCTATTGC
103137 AACGTTTTTA
Statistics
Matches: 198, Mismatches: 29, Indels: 41
0.74 0.11 0.15
Matches are distributed among these distances:
39 5 0.03
40 23 0.12
41 59 0.30
42 101 0.51
43 8 0.04
44 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (40 bp):
GCGTTTTGGTATAAACGCCACTATATGTTAATCTATTGCG
Found at i:103062 original size:82 final size:83
Alignment explanation
Indices: 102947--103136 Score: 276
Period size: 82 Copynumber: 2.3 Consensus size: 83
102937 AAGAATAAAT
* *
102947 GCCACTATATGTGTAATCTATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTACCGATCTATTG
1 GCCACTATATGT-TAATCTATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTACCCATCTATTA
*
103012 TGGCGTTT-TGGCT-AAAAC
65 CGGCGTTTGTGG-TAAAAAC
*
103030 GCCACTATATGTTAATCTATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTACCCCTCTATTAC
1 GCCACTATATGTTAATCTATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTACCCATCTATTAC
*
103095 GGCGTTTGTTGTAAAAAC
66 GGCGTTTGTGGTAAAAAC
* *
103113 GCCGCTATATGTCAACTCTATTGC
1 GCCACTATATGTTAA-TCTATTGC
103137 AACGTTTTTA
Statistics
Matches: 97, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
82 57 0.59
83 32 0.33
84 8 0.08
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (83 bp):
GCCACTATATGTTAATCTATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTACCCATCTATTAC
GGCGTTTGTGGTAAAAAC
Found at i:106036 original size:2 final size:2
Alignment explanation
Indices: 106029--106054 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
106019 ATTAAGGGGC
106029 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
106055 TAAATAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107536 original size:3 final size:3
Alignment explanation
Indices: 107510--107575 Score: 87
Period size: 3 Copynumber: 21.3 Consensus size: 3
107500 TTGTAATATT
*
107510 TAA TAAA TAA TATA TAA TAT TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
**
107557 TAA TAA TTT TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA T
107576 TAAATTTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
3 49 0.89
4 6 0.11
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:108457 original size:92 final size:91
Alignment explanation
Indices: 108324--108613 Score: 275
Period size: 91 Copynumber: 3.2 Consensus size: 91
108314 GATCCTTCTT
* ** * *
108324 CCCATGAGCACATCATC-CCCTAGATCCTTAAGCTCCA-TGGGGACTTTATGTTCTAGAGGTGAA
1 CCCATGAGCTCATCATCACCC-AGATCCTCCAGCT-CATTGGGGACATTATGTTCCAGAGGTGAA
* *
108387 CTAGGCTCATTCTACCCCAAACCCTTATC
64 CT-GGCTCATTCTACCCCAGACCCTCATC
* * * * *
108416 CCCATGAGCTCATCATCACTCAGATCCTCCGGGTTC-TTGGGGACACTATGTTCCATAGGTGAAC
1 CCCATGAGCTCATCATCACCCAGATCCTCC-AGCTCATTGGGGACATTATGTTCCAGAGGTGAAC
* * * * *
108480 TGGTTCATTTTGCGCCAGA-CCTCCTC
65 TGGCTCATTCTACCCCAGACCCTCATC
* * * *
108506 ACTCATGAGCTCATCATCACCCAGATCCTCCAGCTCATTGGGGAAATTA-GTTCCAGAAGTGAAA
1 -CCCATGAGCTCATCATCACCCAGATCCTCCAGCTCATTGGGGACATTATGTTCCAGAGGTGAAC
* * *
108570 TGTGCTTATCCAACCCCAGACCCTCATC
65 TG-GCTCATTCTACCCCAGACCCTCATC
108598 CCCATGAGCTCATCAT
1 CCCATGAGCTCATCAT
108614 ACTGTCGACA
Statistics
Matches: 156, Mismatches: 35, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
90 22 0.14
91 76 0.49
92 54 0.35
93 4 0.03
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.27
Consensus pattern (91 bp):
CCCATGAGCTCATCATCACCCAGATCCTCCAGCTCATTGGGGACATTATGTTCCAGAGGTGAACT
GGCTCATTCTACCCCAGACCCTCATC
Found at i:108996 original size:11 final size:12
Alignment explanation
Indices: 108960--108998 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
108950 AAACTTGTTC
108960 ATTAATTAAATA
1 ATTAATTAAATA
108972 ACTTAATATAAATA
1 A-TTAAT-TAAATA
108986 ATT-ATTAAATA
1 ATTAATTAAATA
108997 AT
1 AT
108999 ATTTAACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 8 0.32
12 3 0.12
13 7 0.28
14 7 0.28
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (12 bp):
ATTAATTAAATA
Found at i:109273 original size:2 final size:2
Alignment explanation
Indices: 109266--109302 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
109256 TACGTTATTA
109266 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
109303 ATAGTGACTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:109582 original size:23 final size:23
Alignment explanation
Indices: 109530--109582 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
109520 TCATTTTGCT
*
109530 TCTCTCCCAAAGGAGGGAGAAGC
1 TCTCTCTCAAAGGAGGGAGAAGC
109553 TCTCTCTCAAAGGAGGGAGAAGC
1 TCTCTCTCAAAGGAGGGAGAAGC
109576 TCTCTCT
1 TCTCTCT
109583 TCTCTCTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (23 bp):
TCTCTCTCAAAGGAGGGAGAAGC
Found at i:110448 original size:3 final size:3
Alignment explanation
Indices: 110436--110529 Score: 83
Period size: 3 Copynumber: 32.7 Consensus size: 3
110426 TTAATATTTG
* *
110436 TAA T-A TAA TAA TAT TAA TATA TAA TATA TAA TAA TAA TAA T-A TAG
1 TAA TAA TAA TAA TAA TAA TA-A TAA TA-A TAA TAA TAA TAA TAA TAA
* * *
110481 TAA T-A TAG TAA T-A TAG TAA TAA T-A TAA TAA TAG TAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
110525 TAA TA
1 TAA TA
110530 TCAACTCGGA
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
2 12 0.16
3 55 0.75
4 6 0.08
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:110449 original size:8 final size:8
Alignment explanation
Indices: 110436--110530 Score: 101
Period size: 8 Copynumber: 11.8 Consensus size: 8
110426 TTAATATTTG
110436 TAATATAA
1 TAATATAA
110444 TAATATTAA
1 TAATA-TAA
110453 T-ATATAA
1 TAATATAA
110460 T-ATATAA
1 TAATATAA
110467 TAATAATAA
1 TAAT-ATAA
110476 T-ATAGTAA
1 TAATA-TAA
110484 T-ATAGTAA
1 TAATA-TAA
110492 T-ATAGTAA
1 TAATA-TAA
110500 TAATATAA
1 TAATATAA
110508 TAATAGTAA
1 TAATA-TAA
110517 TAATATAA
1 TAATATAA
110525 TAATAT
1 TAATAT
110531 CAACTCGGAC
Statistics
Matches: 81, Mismatches: 0, Indels: 12
0.87 0.00 0.13
Matches are distributed among these distances:
7 12 0.15
8 49 0.60
9 20 0.25
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (8 bp):
TAATATAA
Found at i:110453 original size:14 final size:14
Alignment explanation
Indices: 110436--110526 Score: 73
Period size: 14 Copynumber: 6.4 Consensus size: 14
110426 TTAATATTTG
110436 TAATATAATAATAT
1 TAATATAATAATAT
110450 TAATAT-ATAATAT
1 TAATATAATAATAT
110463 ATAATAATAATAATAT
1 -TAAT-ATAATAATAT
*
110479 AGTAATATAGTAATA-
1 --TAATATAATAATAT
* *
110494 TAGTAATAAT-ATAA
1 TAAT-ATAATAATAT
110508 TAATAGTAATAATA-
1 TAATA-TAATAATAT
110522 TAATA
1 TAATA
110527 ATATCAACTC
Statistics
Matches: 64, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
13 14 0.22
14 26 0.41
15 5 0.08
16 15 0.23
17 4 0.06
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (14 bp):
TAATATAATAATAT
Found at i:111144 original size:123 final size:122
Alignment explanation
Indices: 110912--111145 Score: 371
Period size: 123 Copynumber: 1.9 Consensus size: 122
110902 TTAGAGTCAA
* *
110912 TTTCAACTAACAGCGAAAGATATTGAACTCGAAGCGATGCAATTTACAAGATTGGATTTCAACTT
1 TTTCAACTAACAACGAAAGATATTAAACTCGAAGCGATGCAATTTACAAGATTGGATTTCAACTT
*
110977 TACAACGAAGGACACCCAATTCAAAGATCAACTTCACAGTGAAGGAGCTATCCACAT
66 TACAACGAAAGACACCCAATTCAAAGATCAACTTCACAGTGAAGGAGCTATCCACAT
* * *
111034 TTTCAACTTCACAACGAAAGATATTAAACTTGAGGCGATGCAATTTACAAGATTGGATTTCAA-T
1 TTTCAAC-TAACAACGAAAGATATTAAACTCGAAGCGATGCAATTTACAAGATTGGATTTCAACT
* *
111098 TTCACAACGAAAGACATCCAATTCAAAGCTCAACTTCACAGTGAAGGA
65 TT-ACAACGAAAGACACCCAATTCAAAGATCAACTTCACAGTGAAGGA
111146 TCCCATCCAT
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
122 10 0.10
123 92 0.90
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.25
Consensus pattern (122 bp):
TTTCAACTAACAACGAAAGATATTAAACTCGAAGCGATGCAATTTACAAGATTGGATTTCAACTT
TACAACGAAAGACACCCAATTCAAAGATCAACTTCACAGTGAAGGAGCTATCCACAT
Found at i:111845 original size:26 final size:26
Alignment explanation
Indices: 111808--111869 Score: 92
Period size: 28 Copynumber: 2.4 Consensus size: 26
111798 TTTTTTTAAA
111808 ATATTTTT-AAA-ATATATATAATAT
1 ATATTTTTGAAATATATATATAATAT
111832 ATAGTTTTTGAAAATATATATATAATAT
1 ATA-TTTTTG-AAATATATATATAATAT
111860 ATATTTTTGA
1 ATATTTTTGA
111870 TTTTTTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
24 3 0.09
25 5 0.15
26 1 0.03
27 9 0.26
28 16 0.47
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (26 bp):
ATATTTTTGAAATATATATATAATAT
Found at i:111855 original size:32 final size:35
Alignment explanation
Indices: 111819--111894 Score: 88
Period size: 36 Copynumber: 2.3 Consensus size: 35
111809 TATTTTTAAA
111819 ATATATATA-ATATAT-A-GTTTTTGAAAATATAT
1 ATATATATATATATATGATGTTTTTGAAAATATAT
* * *
111851 ATATAATATATATTTTTGATTTTTTTGAAAATATAT
1 ATAT-ATATATATATATGATGTTTTTGAAAATATAT
111887 A-ATATATA
1 ATATATATA
111895 GTTTCTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 4 0.11
33 5 0.14
34 9 0.24
35 3 0.08
36 16 0.43
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (35 bp):
ATATATATATATATATGATGTTTTTGAAAATATAT
Found at i:111862 original size:39 final size:38
Alignment explanation
Indices: 111777--111863 Score: 113
Period size: 37 Copynumber: 2.3 Consensus size: 38
111767 TAAAATTTTG
* * *
111777 AAAACATATATAATATATAGTTTTTTTTAAAATATTTTT
1 AAAATATATATAATATATAG-TTTTTTGAAAATATTTAT
*
111816 AAAATATATATAATATATAG-TTTTTGAAAATATATAT
1 AAAATATATATAATATATAGTTTTTTGAAAATATTTAT
*
111853 ATAATATATAT
1 AAAATATATAT
111864 TTTTGATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
37 24 0.56
39 19 0.44
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.47
Consensus pattern (38 bp):
AAAATATATATAATATATAGTTTTTTGAAAATATTTAT
Found at i:111926 original size:29 final size:29
Alignment explanation
Indices: 111883--111980 Score: 121
Period size: 29 Copynumber: 3.4 Consensus size: 29
111873 TTTTGAAAAT
111883 ATATAATATATAGTTTCT-AAAATATTTTGA
1 ATAT-ATATATAGTTT-TGAAAATATTTTGA
*
111913 ATATATATATAGTTTTTGAAAACATTTT-A
1 ATATATATATAG-TTTTGAAAATATTTTGA
* *
111942 A-AAATATATAATTTTGAAAATATTTTGA
1 ATATATATATAGTTTTGAAAATATTTTGA
111970 ATATATATATA
1 ATATATATATA
111981 TATATATATA
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
27 14 0.24
28 10 0.17
29 19 0.32
30 16 0.27
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (29 bp):
ATATATATATAGTTTTGAAAATATTTTGA
Found at i:111966 original size:27 final size:27
Alignment explanation
Indices: 111887--111978 Score: 87
Period size: 27 Copynumber: 3.3 Consensus size: 27
111877 GAAAATATAT
*
111887 AATATATAGTTTCT-AAAATATTTTGAATA
1 AATATATAATTT-TGAAAATATTTT-AA-A
* * *
111916 TATATATAGTTTTTGAAAACATTTTAAA
1 AATATATA-ATTTTGAAAATATTTTAAA
*
111944 AATATATAATTTTGAAAATATTTTGAA
1 AATATATAATTTTGAAAATATTTTAAA
*
111971 TATATATA
1 AATATATA
111979 TATATATATA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
27 23 0.43
28 8 0.15
29 10 0.19
30 12 0.23
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (27 bp):
AATATATAATTTTGAAAATATTTTAAA
Found at i:111986 original size:35 final size:35
Alignment explanation
Indices: 111945--112135 Score: 125
Period size: 33 Copynumber: 5.5 Consensus size: 35
111935 CATTTTAAAA
*
111945 ATATATAATTTTGAAAATATTTTGAATATATATATATAT
1 ATATATAATTTTGAAAACATTTTG-A-A-A-ATATATAT
111984 ATATATATAGTTTTTGAAAACATTTTG-AAA-A-A-AT
1 ATATATA-A--TTTTGAAAACATTTTGAAAATATATAT
* * ** *
112018 ATATATAA-TAT--ATAGTTTTTGAAAATATAAAT
1 ATATATAATTTTGAAAACATTTTGAAAATATATAT
* *
112050 AATAAATAGTTTTTGAAAACATTTTGAAAATATATA-
1 -ATATATA-ATTTTGAAAACATTTTGAAAATATATAT
112086 ATATATAATTTTTG-AAA-ATTTTGAAAATATATAT
1 ATATATAA-TTTTGAAAACATTTTGAAAATATATAT
* *
112120 -TATATAGTTTTTAAAA
1 ATATATAATTTTGAAAA
112136 AATATTTATA
Statistics
Matches: 121, Mismatches: 16, Indels: 36
0.70 0.09 0.21
Matches are distributed among these distances:
28 7 0.06
29 3 0.02
30 3 0.02
31 1 0.01
32 6 0.05
33 32 0.26
34 12 0.10
35 14 0.12
36 1 0.01
37 17 0.14
38 1 0.01
39 8 0.07
40 1 0.01
42 15 0.12
ACGTcount: A:0.48, C:0.01, G:0.07, T:0.45
Consensus pattern (35 bp):
ATATATAATTTTGAAAACATTTTGAAAATATATAT
Found at i:111997 original size:69 final size:63
Alignment explanation
Indices: 111765--112104 Score: 259
Period size: 65 Copynumber: 5.3 Consensus size: 63
111755 ACATAATATA
* * * *
111765 TATAAAA-TTTTGAAAACATATATA-ATATATAGTTTTTTTTAAAATATTTTTAAAATATATATA
1 TATAAAATTTTTGAAAATATAAATATATATATAG--TTTTTGAAAACA-TTTTAAAA-ATATATA
111828 A-
62 AT
* * * *** *
111829 TATATAGTTTTTGAAAATATATATATAATATATA-TTTTTG--ATTTTTTTGAAAATATATAA-
1 TATAAAATTTTTGAAAATATAAATAT-ATATATAGTTTTTGAAAACATTTTAAAAATATATAAT
* * * *
111889 TATATAGTTTCT-AAAATATTTTGAATATATATATAGTTTTTGAAAACATTTTAAAAATATATAA
1 TATAAAATTTTTGAAAATA---TAAATATATATATAGTTTTTGAAAACATTTTAAAAATATATAA
111953 T
63 T
*
111954 TTTGAAAATATTTTGAATATATATATATATATATATATAGTTTTTGAAAACATTTTGAAAAAATA
1 TAT-AAAAT-TTTTGAA-A-ATATA-A-ATATATATATAGTTTTTGAAAACATTTT--AAAAATA
*
112019 TATATAA
58 TATA-AT
* * * *
112026 TATATAGTTTTTGAAAATATAAATA-ATAAATAGTTTTTGAAAACATTTTGAAAATATATAA-
1 TATAAAATTTTTGAAAATATAAATATATATATAGTTTTTGAAAACATTTTAAAAATATATAAT
*
112087 TATATAATTTTTGAAAAT
1 TATAAAATTTTTGAAAAT
112105 TTTGAAAATA
Statistics
Matches: 230, Mismatches: 26, Indels: 43
0.77 0.09 0.14
Matches are distributed among these distances:
59 6 0.03
60 19 0.08
61 31 0.13
62 14 0.06
63 10 0.04
64 26 0.11
65 41 0.18
66 6 0.03
67 12 0.05
68 8 0.03
69 30 0.13
70 10 0.04
71 14 0.06
72 3 0.01
ACGTcount: A:0.46, C:0.01, G:0.06, T:0.46
Consensus pattern (63 bp):
TATAAAATTTTTGAAAATATAAATATATATATAGTTTTTGAAAACATTTTAAAAATATATAAT
Found at i:112002 original size:42 final size:39
Alignment explanation
Indices: 111944--112045 Score: 143
Period size: 39 Copynumber: 2.6 Consensus size: 39
111934 ACATTTTAAA
* *
111944 AATATATA-ATTTTGAAAATATTTTGAATATATATATATAT
1 AATATATAGTTTTTGAAAATATTTTGAA-A-AAATATATAT
*
111984 ATATATATAGTTTTTGAAAACATTTTGAAAAAATATATAT
1 A-ATATATAGTTTTTGAAAATATTTTGAAAAAATATATAT
112024 AATATATAGTTTTTGAAAATAT
1 AATATATAGTTTTTGAAAATAT
112046 AAATAATAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
39 20 0.36
40 11 0.20
41 8 0.14
42 17 0.30
ACGTcount: A:0.47, C:0.01, G:0.07, T:0.45
Consensus pattern (39 bp):
AATATATAGTTTTTGAAAATATTTTGAAAAAATATATAT
Found at i:112046 original size:26 final size:26
Alignment explanation
Indices: 112013--112068 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
112003 ACATTTTGAA
* *
112013 AAAATATATATAATATATAGTTTTTG
1 AAAATATAAATAATAAATAGTTTTTG
112039 AAAATATAAATAATAAATAGTTTTTG
1 AAAATATAAATAATAAATAGTTTTTG
112065 AAAA
1 AAAA
112069 CATTTTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (26 bp):
AAAATATAAATAATAAATAGTTTTTG
Found at i:112116 original size:134 final size:134
Alignment explanation
Indices: 111881--112136 Score: 324
Period size: 134 Copynumber: 1.9 Consensus size: 134
111871 TTTTTTGAAA
* *
111881 ATATATAATATATAGTTTCTAAAATATTTTGAATATATATATAGTTTTTGAAAACATTTTAAAAA
1 ATATATAATATATAGTTTCTAAAATA--TTAAATATATAAATAGTTTTTGAAAACATTTTAAAAA
* * * *
111946 TATATAATTTTGAAAATATTTTGAATATATATATATATATATATATAGTTTTTGAAAACATTTTG
64 TATATAATTATGAAAATATTTTGAAAATATAAATATATAT-TATATAGTTTTTAAAAACATTTTG
112011 AAAAAAT
128 AAAAAAT
* *
112018 ATATATAATATATAGTTTTTGAAAATA-TAAATA-ATAAATAGTTTTTGAAAACATTTTGAAAAT
1 ATATATAATATATAGTTTCT-AAAATATTAAATATATAAATAGTTTTTGAAAACATTTTAAAAAT
* *
112081 ATATAA-TAT-ATAAT-TTTTGAAAATTTTGAAAATATATATTATATAGTTTTTAAAAA
65 ATATAATTATGAAAATATTTTGAAAA-TAT--AAATATATATTATATAGTTTTTAAAAA
112137 ATATTTATAT
Statistics
Matches: 105, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
131 8 0.08
132 6 0.06
133 18 0.17
134 43 0.41
135 5 0.05
137 19 0.18
138 6 0.06
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.45
Consensus pattern (134 bp):
ATATATAATATATAGTTTCTAAAATATTAAATATATAAATAGTTTTTGAAAACATTTTAAAAATA
TATAATTATGAAAATATTTTGAAAATATAAATATATATTATATAGTTTTTAAAAACATTTTGAAA
AAAT
Found at i:112135 original size:23 final size:22
Alignment explanation
Indices: 112104--112146 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
112094 TTTTTGAAAA
*
112104 TTTTGAAAATATATATTATATAG
1 TTTTGAAAAAATAT-TTATATAG
*
112127 TTTTTAAAAAATATTTATAT
1 TTTTGAAAAAATATTTATAT
112147 TATATTATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (22 bp):
TTTTGAAAAAATATTTATATAG
Found at i:114999 original size:21 final size:21
Alignment explanation
Indices: 114975--115014 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
114965 AAGACTTTAT
114975 TTTCAAAATAT-AAAAATGATA
1 TTTCAAAAT-TGAAAAATGATA
114996 TTTCAAAATTGAAAAATGA
1 TTTCAAAATTGAAAAATGA
115015 AAATAGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (21 bp):
TTTCAAAATTGAAAAATGATA
Done.