Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005196.1 Hibiscus syriacus cultivar Beakdansim tig00011741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99750

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
224--262
20
1.9
21
94
5
71
33
35
20
10
1.86
795--829
17
2.1
17
94
0
61
14
0
85
0
0.59
3238--3264
2
13.5
2
100
0
54
48
0
0
51
1.00
13221--13295
37
2.0
37
100
0
150
37
8
13
41
1.74
15514--15631
37
3.2
37
95
0
209
27
25
16
31
1.96
15830--15873
18
2.4
18
84
0
61
31
0
18
50
1.47
15826--15876
18
2.9
17
80
13
59
35
0
19
45
1.51
18329--18355
4
6.8
4
100
0
54
25
0
22
51
1.48
21244--21419
91
1.9
92
83
3
230
36
17
15
30
1.90
23931--23979
20
2.5
19
90
3
71
75
8
8
8
1.19
25337--25558
75
3.0
75
94
0
381
14
27
18
39
1.90
26396--26456
21
3.2
21
65
26
62
37
1
9
50
1.45
26395--26474
36
2.2
36
91
2
126
37
2
12
47
1.55
30980--31040
21
3.2
21
65
26
62
31
4
16
47
1.68
30979--31058
36
2.2
36
93
2
135
31
5
18
45
1.71
37700--37758
31
1.9
31
93
6
102
44
3
8
44
1.51
37782--38187
22
18.5
22
84
4
509
47
10
0
42
1.37
37782--38187
66
6.2
66
88
1
562
47
10
0
42
1.37
38177--38207
12
2.6
12
100
0
62
48
0
6
45
1.28
41166--41190
2
12.5
2
100
0
50
52
0
0
48
1.00
42191--42531
131
2.6
131
83
1
443
39
16
11
32
1.84
46417--46461
19
2.3
20
81
14
58
66
17
0
15
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46417--46454
20
1.9
20
84
10
51
71
13
0
15
1.16
46844--46888
21
2.1
22
83
4
56
24
20
28
26
1.99
46876--46931
23
2.5
23
82
5
71
39
19
12
28
1.88
51905--51957
23
2.4
23
79
14
58
28
18
0
52
1.46
61816--61853
17
2.2
17
90
0
58
21
23
36
18
1.95
61872--61905
11
3.4
10
88
11
52
32
29
23
14
1.94
61853--61906
20
2.7
20
83
8
65
27
27
27
16
1.97
66779--66823
13
3.5
13
96
0
81
28
31
6
33
1.83
69078--69112
16
2.2
16
94
0
61
14
25
42
17
1.86
70558--70618
30
2.0
31
90
3
97
40
16
11
31
1.84
71306--71347
20
2.0
21
86
4
59
0
57
2
40
1.12
71670--71708
12
3.2
12
85
3
51
43
0
0
56
0.99
71714--71740
11
2.5
11
100
0
54
77
0
0
22
0.76
72575--72646
18
3.9
18
92
1
117
30
34
18
16
1.93
72627--72671
21
2.1
22
87
4
65
33
26
17
22
1.96
77595--77641
19
2.5
19
96
0
85
36
17
12
34
1.87
77793--77866
18
3.8
20
82
15
102
28
32
20
18
1.96
79409--79463
20
2.5
22
82
11
60
27
18
18
36
1.94
82985--83056
18
3.8
18
83
5
81
30
30
19
19
1.96
83017--83060
21
2.1
21
95
0
79
31
25
22
20
1.98
97280--97363
2
43.0
2
95
4
154
50
0
0
50
1.00

Tables:   1

The End!