Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005197.1 Hibiscus syriacus cultivar Beakdansim tig00011742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89045

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1057--1265
43
5.1
41
76
14
182
26
12
5
54
1.60
1057--1236
80
2.2
82
83
8
226
27
11
4
56
1.54
1219--1316
51
1.9
51
81
4
117
24
22
6
46
1.74
1311--1465
73
2.1
73
86
2
213
25
18
7
47
1.75
1396--1534
43
3.2
43
82
7
165
28
18
6
46
1.74
14441--14496
14
4.1
14
78
21
66
16
14
16
53
1.73
14442--14497
24
2.2
26
90
9
98
17
12
16
53
1.73
14730--14769
14
2.9
14
85
3
55
2
12
27
57
1.48
14827--14859
16
2.1
16
100
0
66
6
12
24
57
1.57
23452--24093
142
4.5
143
85
3
819
33
12
18
35
1.88
23452--24093
285
2.3
285
82
3
781
33
12
18
35
1.88
29400--29479
21
3.8
21
79
9
81
17
25
35
22
1.95
29421--29481
20
2.9
21
85
7
79
19
26
32
21
1.97
33292--33331
21
1.9
21
85
10
55
35
7
2
55
1.42
36538--36579
21
2.0
21
90
0
66
21
26
23
28
1.99
36601--36660
21
2.9
21
92
0
93
26
25
20
28
1.99
36861--36917
29
1.9
30
89
3
89
56
5
8
29
1.52
39457--39502
16
2.7
17
77
16
51
54
26
0
19
1.44
40916--40971
18
3.1
18
94
2
94
62
12
0
25
1.30
41406--41485
23
3.6
22
79
6
90
25
23
25
26
2.00
41409--41504
44
2.2
43
85
5
122
26
20
25
28
1.99
46795--46835
2
20.5
2
100
0
82
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47067--47124
21
2.8
21
80
15
66
25
13
27
32
1.94
47110--47161
23
2.3
23
90
3
88
15
25
28
30
1.96
48128--48161
18
1.9
18
88
5
52
23
17
32
26
1.97
48304--48433
65
2.0
65
96
0
242
41
9
16
32
1.80
48316--48459
65
2.2
65
85
4
184
44
10
14
30
1.79
52608--52643
18
2.0
18
88
0
54
22
16
5
55
1.62
52612--52653
18
2.4
18
80
15
52
19
16
4
59
1.54
58028--58104
21
3.6
21
70
6
73
35
25
19
19
1.95
58016--58099
44
1.9
43
97
2
159
35
25
17
21
1.95
60141--60690
81
6.8
81
86
4
695
36
11
18
34
1.87
60141--60690
161
3.4
161
86
3
725
36
11
18
34
1.87
61246--61288
22
2.0
22
85
0
59
27
23
16
32
1.96
63401--63617
47
4.8
46
82
7
221
31
19
6
41
1.78
63402--63617
91
2.3
92
83
8
246
31
19
6
41
1.78
63464--63617
44
3.4
44
81
12
172
30
18
8
42
1.79
66036--66068
16
2.1
16
100
0
66
30
12
30
27
1.92
74322--74364
18
2.5
17
85
7
59
25
25
0
48
1.51
83414--83488
14
5.2
14
70
14
55
41
0
2
56
1.13
85271--85408
64
2.2
63
79
7
145
34
18
22
24
1.96
85419--85471
20
2.7
20
96
0
97
28
20
22
28
1.99

Tables:   1

The End!