genome.fa.s5198.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005198.1 Hibiscus syriacus cultivar Beakdansim tig00011743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95756

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2131--2158	14	2.0	14	100	0	56	21	35	7	35	1.81
6963--6993	8	3.9	8	95	0	53	29	32	12	25	1.93
11615--11672	21	2.8	21	97	0	107	5	29	43	22	1.75
13866--13916	12	4.7	10	77	17	57	54	0	1	43	1.11
13859--13913	24	2.3	24	81	9	67	52	0	1	45	1.11
14448--14515	20	3.4	20	87	0	91	33	17	20	27	1.95
14640--14681	20	2.1	20	95	0	75	38	21	19	21	1.94
15296--15345	22	2.3	22	96	0	91	40	12	12	36	1.79
22734--22791	26	2.2	26	96	0	107	37	12	17	32	1.86
26948--27026	34	2.3	34	84	4	97	44	25	10	20	1.82
30817--30986	85	2.0	85	100	0	340	30	18	21	29	1.97
34549--34590	22	1.9	22	90	0	66	30	21	21	26	1.98
39223--39264	22	1.9	22	90	0	66	28	21	21	28	1.99
43241--43404	83	2.0	83	90	0	256	40	12	20	27	1.88
44103--44149	19	2.5	19	82	3	60	48	4	17	29	1.65
44303--44367	18	3.4	18	70	12	58	30	7	15	46	1.74
44305--44387	39	2.1	39	93	0	139	27	7	16	48	1.73
47366--47490	57	2.2	57	91	0	196	48	10	21	20	1.79
49574--49604	15	2.1	15	93	0	53	45	0	0	54	0.99
52743--52969	113	2.0	113	100	0	454	33	10	22	32	1.89
57262--57306	9	5.0	9	82	17	58	17	37	33	11	1.85
57263--57306	18	2.4	18	100	0	88	15	38	34	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58767--58798	14	2.3	14	94	0	55	46	25	12	15	1.81
70361--70400	14	2.8	15	75	24	50	7	32	0	60	1.25
70930--70988	21	2.8	21	82	7	66	37	20	18	23	1.94
72019--72121	44	2.3	45	80	5	129	21	17	31	30	1.96
73230--73408	45	4.0	45	90	0	268	20	22	12	44	1.85
73230--73408	90	2.0	90	92	0	295	20	22	12	44	1.85
73831--74013	95	1.9	94	86	5	262	26	24	12	37	1.90
76582--76616	18	1.9	18	88	0	52	17	31	31	20	1.95
78498--78616	39	3.1	39	76	12	120	36	15	0	47	1.46
84252--84304	21	2.5	21	81	6	72	20	24	18	35	1.95
84294--84358	21	3.1	21	91	2	96	38	15	23	23	1.92
84362--84413	19	2.6	19	87	6	68	38	28	17	15	1.90
84362--84468	20	5.3	20	83	7	110	32	27	16	23	1.96
84362--84468	40	2.7	41	85	2	128	32	27	16	23	1.96
84655--84698	22	2.0	22	100	0	88	22	45	13	18	1.84
84960--85008	20	2.5	20	79	0	53	18	18	24	38	1.93
84976--85018	20	2.2	20	86	0	59	11	18	18	51	1.76
86330--86377	18	2.7	18	93	0	87	27	45	12	14	1.81
86922--86964	20	2.2	19	91	4	68	37	13	23	25	1.92
86950--87032	19	4.6	19	78	14	95	46	19	19	14	1.83
87070--87124	20	2.8	20	91	2	85	16	27	23	32	1.96
87498--87565	21	3.3	20	74	8	66	25	39	16	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87488--87577	40	2.2	42	86	4	130	22	40	15	22	1.91
88976--89014	14	2.8	14	84	0	51	35	0	17	46	1.49
89198--89240	18	2.2	20	88	8	63	16	23	25	34	1.95
89524--89578	20	2.7	21	82	5	67	23	21	14	40	1.90
89586--89693	20	5.4	20	93	0	162	24	29	16	29	1.97
90438--90491	24	2.2	24	90	0	81	22	16	20	40	1.91
90665--90706	3	14.0	3	84	0	57	73	0	26	0	0.83
90665--90706	12	3.5	12	100	0	84	73	0	26	0	0.83
92977--93008	16	2.0	16	93	0	55	37	28	18	15	1.92
93025--93084	19	3.4	19	69	21	67	48	18	20	13	1.81
92995--93119	33	3.8	33	91	2	191	46	18	24	11	1.81
93123--93209	18	5.2	17	80	17	94	12	17	21	48	1.80
93119--93241	49	2.5	49	86	7	160	13	19	21	45	1.84
93129--93241	18	6.8	17	76	19	89	11	20	21	46	1.81
93348--93383	14	2.6	14	86	4	56	47	25	0	27	1.52
94695--94761	21	3.2	21	68	4	55	19	20	35	23	1.95
95028--95202	84	2.0	84	85	12	230	47	17	12	23	1.80
95591--95631	18	2.2	18	86	8	55	17	12	46	24	1.82

Tables:   1

The End!