genome.fa.s5199.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005199.1 Hibiscus syriacus cultivar Beakdansim tig00011747_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124700

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4469--4584	47	2.6	43	81	10	135	40	7	19	31	1.80
5047--5077	3	10.3	3	100	0	62	0	0	32	67	0.91
5892--5922	13	2.4	13	94	0	53	51	0	0	48	1.00
8735--8822	32	2.8	32	87	0	113	29	25	25	20	1.99
8688--8816	64	2.0	64	83	0	159	27	24	26	21	1.99
14501--14606	32	3.3	31	79	7	115	26	30	23	19	1.98
16394--16431	20	1.9	20	100	0	76	31	21	23	23	1.98
21418--21466	19	2.6	19	100	0	98	28	16	32	22	1.95
21521--21578	20	2.6	22	89	10	84	31	20	22	25	1.98
22660--22769	2	55.0	2	100	0	220	50	0	0	50	1.00
23245--23313	23	3.0	23	78	0	84	18	24	24	31	1.98
24229--24290	27	2.2	28	85	2	81	22	11	19	46	1.81
26694--26958	41	6.5	41	93	1	460	18	20	24	36	1.95
26694--26999	41	7.4	40	90	3	402	18	20	24	36	1.94
26694--26999	123	2.5	122	90	4	447	18	20	24	36	1.94
27555--27626	6	12.3	6	98	1	130	0	16	51	31	1.45
27726--27794	22	3.4	22	69	22	78	34	26	20	18	1.96
27720--27924	41	5.1	40	84	11	233	36	23	22	17	1.95
27786--27899	20	5.6	20	75	8	113	36	25	23	14	1.92
27720--27921	82	2.5	83	84	12	276	36	24	22	16	1.95
27957--28097	21	7.2	20	66	15	89	36	22	19	21	1.95
27957--28101	41	3.7	41	84	12	223	37	22	19	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27979--28089	34	3.1	34	82	16	150	38	20	18	21	1.93
27783--28130	177	1.9	180	87	7	510	35	22	22	19	1.96
33557--33598	21	2.0	21	85	0	57	52	0	7	40	1.29
39583--39623	21	2.0	21	90	0	64	9	12	39	39	1.76
42250--42331	29	2.8	29	92	1	128	34	14	9	41	1.79
47006--47087	29	2.8	29	92	1	128	32	14	10	41	1.81
53620--53649	2	15.0	2	100	0	60	50	0	0	50	1.00
69488--69532	17	2.6	17	96	0	81	17	26	26	28	1.98
71986--72104	24	5.0	24	88	4	177	25	15	19	39	1.91
72188--72253	35	1.9	34	84	3	87	15	27	25	31	1.95
72315--72343	2	14.5	2	100	0	58	48	0	0	51	1.00
76831--76945	24	4.8	24	88	4	160	26	13	20	40	1.88
77028--77096	35	2.0	35	97	0	129	8	30	30	30	1.87
79721--80328	302	2.0	302	99	0	1189	30	17	21	30	1.96
82067--82430	48	7.8	48	83	6	444	33	18	20	27	1.96
82067--82430	136	2.6	136	89	3	541	33	18	20	27	1.96
82345--82563	112	1.9	113	92	0	368	32	18	21	27	1.96
83641--83691	17	2.9	19	83	13	65	9	7	3	78	1.07
90350--90395	24	1.9	24	82	8	58	8	28	4	58	1.47
95773--95817	21	2.1	21	84	8	56	24	2	37	35	1.68
100724--100755	16	1.9	17	93	6	57	6	15	3	75	1.14
104261--104310	20	2.5	20	96	0	91	44	20	14	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105022--105189	78	2.2	78	92	0	282	27	14	23	33	1.94
105208--105281	20	3.8	20	78	5	71	28	9	20	41	1.83
105226--105297	20	3.7	20	74	12	60	29	12	20	37	1.90
106056--106099	21	2.0	23	82	8	56	50	4	13	31	1.62
106492--106579	11	8.1	12	67	24	52	50	1	0	48	1.08
106496--106580	21	4.2	20	76	7	82	47	1	0	51	1.08
107346--107377	2	16.0	2	100	0	64	50	0	0	50	1.00
108197--108231	3	11.7	3	87	0	52	0	34	2	62	1.10
113760--113850	24	3.8	24	85	2	121	37	19	17	25	1.94
113760--113850	47	1.9	48	88	2	139	37	19	17	25	1.94
116166--116221	13	4.3	13	86	0	76	19	19	42	17	1.89
118184--118258	35	2.1	35	90	0	114	33	29	26	10	1.90
118335--118416	24	3.5	24	83	3	112	35	21	18	24	1.96
118347--118409	23	2.7	24	87	2	92	36	23	17	22	1.95
118348--118410	12	5.3	12	67	17	51	34	23	19	22	1.96
120702--120737	13	2.8	13	86	0	54	13	16	47	22	1.82
123932--124023	46	2.0	46	100	0	184	36	21	19	21	1.95

Tables:   1

The End!