genome.fa.s52.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000052.1 Hibiscus syriacus cultivar Beakdansim tig00000079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83736

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1092--1139	15	3.4	15	83	11	66	50	0	0	50	1.00
1513--1546	14	2.4	14	90	0	50	73	0	20	5	1.04
2025--2068	22	2.0	22	100	0	88	50	13	0	36	1.42
2163--2221	31	1.9	31	92	0	100	40	6	10	42	1.65
2506--2544	11	3.6	11	82	3	53	48	2	0	48	1.15
9171--9204	2	17.0	2	100	0	68	50	0	0	50	1.00
10190--10283	20	4.7	20	80	10	111	35	27	18	19	1.95
10187--10303	20	5.7	22	74	12	72	37	25	17	19	1.93
10191--10278	19	4.4	19	75	13	79	32	29	18	19	1.95
10471--10514	22	2.0	22	95	0	79	20	40	15	22	1.90
10776--10825	20	2.5	20	83	0	55	16	16	26	42	1.88
10792--10834	20	2.2	20	91	0	68	9	18	20	51	1.74
10971--11025	25	2.2	24	78	15	58	23	9	14	52	1.70
12154--12201	18	2.7	18	93	0	87	27	45	12	14	1.81
12736--12781	20	2.3	20	84	0	56	36	23	21	17	1.94
12747--12791	20	2.3	20	88	3	74	37	17	24	20	1.93
12755--12839	19	4.6	19	73	16	72	41	21	21	16	1.90
12844--12918	20	3.8	20	89	1	116	16	26	24	33	1.95
12846--12938	40	2.3	40	86	0	123	17	22	25	34	1.96
13285--13345	21	3.0	20	73	7	68	24	42	11	21	1.86
13282--13372	42	2.2	42	84	2	121	23	41	14	20	1.89
13881--13984	20	5.5	20	74	13	103	38	25	20	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13917--13992	20	3.8	20	87	0	116	40	22	21	15	1.90
14021--14078	20	2.9	20	79	5	73	17	20	20	41	1.90
14285--14361	20	3.8	20	92	0	127	28	20	27	23	1.99
14294--14402	20	5.4	20	83	6	121	24	19	27	28	1.98
14433--14485	21	2.5	22	72	6	56	33	16	24	24	1.96
14796--14859	2	32.5	2	96	3	121	50	0	0	50	1.00
19440--19655	108	2.0	108	94	0	378	30	20	11	37	1.88
24013--24154	65	2.2	65	94	0	257	30	20	21	27	1.98
24299--24329	2	15.5	2	100	0	62	48	0	0	51	1.00
24575--24610	10	3.6	10	89	10	56	63	0	0	36	0.94
24569--24619	20	2.5	20	75	12	50	66	1	0	31	1.03
24807--24831	9	2.8	9	100	0	50	48	12	0	40	1.40
30974--31027	27	2.0	27	96	0	99	38	20	11	29	1.87
38259--38752	246	2.0	246	99	0	979	34	20	14	30	1.92
38775--39063	38	7.5	38	73	14	168	45	4	6	43	1.49
38818--38942	37	3.3	37	77	13	130	44	4	7	44	1.53
38812--39000	75	2.5	76	81	7	213	45	4	7	42	1.51
39072--39119	24	2.0	24	88	8	71	20	4	2	72	1.11
40028--41493	732	2.0	732	93	2	2534	28	15	12	44	1.83
44634--44665	2	16.0	2	93	0	55	46	0	0	53	1.00
47719--47769	22	2.3	22	89	3	75	31	17	23	27	1.97
48978--49033	28	2.1	27	83	6	69	23	0	19	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48993--49055	27	2.2	29	83	10	78	22	0	22	55	1.44
73672--73719	2	23.5	2	95	4	87	50	0	2	47	1.12
78314--78367	22	2.5	22	93	0	99	61	3	12	22	1.47
78489--78519	2	15.5	2	100	0	62	51	0	0	48	1.00
80227--81012	105	7.5	105	97	0	1457	23	18	25	33	1.96
81732--81834	53	2.0	52	88	1	152	12	24	16	46	1.81

Tables:   1

The End!