Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000520.1 Hibiscus syriacus cultivar Beakdansim tig00000991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1956684
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 11
Found at i:1903 original size:21 final size:21
Alignment explanation
Indices: 1879--1976 Score: 96
Period size: 20 Copynumber: 4.9 Consensus size: 21
1869 GACAGAAGAG
*
1879 CATTCATAAAGACGAGAATGT
1 CATTCATAAAGACGAGAATGA
* *
1900 CATTCATCAAGACGAGAATGC
1 CATTCATAAAGACGAGAATGA
*
1921 CATTCAT-CAGACGAGAA-GA
1 CATTCATAAAGACGAGAATGA
**
1940 CCCTCATAAAGACGAGAA-GA
1 CATTCATAAAGACGAGAATGA
* *
1960 CCTTCGTAAAGA-GAGAA
1 CATTCATAAAGACGAGAA
1977 CCACATCGCA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.16
20 30 0.45
21 26 0.39
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.17
Consensus pattern (21 bp):
CATTCATAAAGACGAGAATGA
Found at i:1934 original size:20 final size:21
Alignment explanation
Indices: 1879--1937 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
1869 GACAGAAGAG
* *
1879 CATTCATAAAGACGAGAATGT
1 CATTCATCAAGACGAGAATGC
1900 CATTCATCAAGACGAGAATGC
1 CATTCATCAAGACGAGAATGC
1921 CATTCATC-AGACGAGAA
1 CATTCATCAAGACGAGAA
1938 GACCCTCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 9 0.25
21 27 0.75
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (21 bp):
CATTCATCAAGACGAGAATGC
Found at i:8255 original size:34 final size:34
Alignment explanation
Indices: 8128--8261 Score: 101
Period size: 36 Copynumber: 3.9 Consensus size: 34
8118 AAAGTCAATC
* * *
8128 TTAAACCTTCACCG-AGGATAGTGAAGCAGACAATC
1 TTAAACCTTCACCGAAGGGTAGTGAAGCA-TC-ATA
* * * *
8163 TTAAGCCTTCACTGAAGAGG-AGTGAAACAATCCATT
1 TTAAACCTTCACCGAAG-GGTAGTGAAGC-AT-CATA
** * *
8199 TTAAACCTTCACTAAAGAGTAGTGGAGCATCATA
1 TTAAACCTTCACCGAAGGGTAGTGAAGCATCATA
*
8233 TTAAGCCTTCACCGAAGGGTAGTGAAGCA
1 TTAAACCTTCACCGAAGGGTAGTGAAGCA
8262 AATCCATCCA
Statistics
Matches: 77, Mismatches: 17, Indels: 11
0.73 0.16 0.10
Matches are distributed among these distances:
34 27 0.35
35 15 0.19
36 32 0.42
37 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (34 bp):
TTAAACCTTCACCGAAGGGTAGTGAAGCATCATA
Found at i:8445 original size:42 final size:41
Alignment explanation
Indices: 8379--8480 Score: 125
Period size: 42 Copynumber: 2.5 Consensus size: 41
8369 ATTTCACAAT
* *
8379 TTAAGTCCTTCGGGCCATCAGTAAGTCTTTC-GAGCATGATG
1 TTAAGTCCTTCGGGCCATCAGTAAG-CCTTCAGAGCAAGATG
** *
8420 CTTAAGTCCTTCGGGTTATCTGTAAGCCTTCAGAGCAAGATG
1 -TTAAGTCCTTCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
*
8462 ATAAGTCCTTCGGGCCATC
1 TTAAGTCCTTCGGGCCATC
8481 CATAAACCTT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
41 20 0.39
42 31 0.61
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.30
Consensus pattern (41 bp):
TTAAGTCCTTCGGGCCATCAGTAAGCCTTCAGAGCAAGATG
Found at i:8491 original size:41 final size:41
Alignment explanation
Indices: 8380--8494 Score: 108
Period size: 41 Copynumber: 2.8 Consensus size: 41
8370 TTTCACAATT
* * * *
8380 TAAGTCCTTCGGGCCAT-CAGTAAGTCTTTCGAGCATGATGCT
1 TAAGTCCTTCGGGCCATCCA-TAA-ACCTTCGAGCAAGATGCA
** ** *
8422 TAAGTCCTTCGGGTTATCTGTAAGCCTTCAGAGCAAGATG-A
1 TAAGTCCTTCGGGCCATCCATAAACCTTC-GAGCAAGATGCA
8463 TAAGTCCTTCGGGCCATCCATAAACCTTCGAG
1 TAAGTCCTTCGGGCCATCCATAAACCTTCGAG
8495 TAGGAGATGT
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
40 3 0.05
41 28 0.48
42 27 0.47
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (41 bp):
TAAGTCCTTCGGGCCATCCATAAACCTTCGAGCAAGATGCA
Found at i:8681 original size:41 final size:42
Alignment explanation
Indices: 8585--8686 Score: 125
Period size: 42 Copynumber: 2.5 Consensus size: 42
8575 TCACAATGTT
* * * * *
8585 ATAAGTCCTTCGGACCATCAGTAAGGCTTTCGAGCATGATGC
1 ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGC
* * *
8627 TTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATG-
1 ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGC
8668 ATAAATCCTTCGGGCCATC
1 ATAAATCCTTCGGGCCATC
8687 CATAAAACCT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 17 0.34
42 33 0.66
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (42 bp):
ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGC
Found at i:9033 original size:202 final size:204
Alignment explanation
Indices: 8265--9616 Score: 1853
Period size: 202 Copynumber: 6.6 Consensus size: 204
8255 TGAAGCAAAT
*
8265 CCATCCATAAAACCTTCGGTAGGATGTTTTCACATTAATTTGAAAATGGAAAAATGATGTTTTAA
1 CCATCCATAAAACCTTCGGTAGGATGTTTTCACATTAA-TTGAAAATGGAAAAAAGATG--TT--
* *
8330 GATGATGTAATTTTTG-AAACGAAGAATGCAAGTTTCAAAATTTCACAA-TT-TAAGTCCTTCGG
61 --TG--G-AATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCGG
* * * *
8392 GCCATCAGTAAGTCTTTCGAGCATGATGCTTAAGTCCTTCGGGTTATCTGTAAGCCTTCAGAGCA
121 ACCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCA
8457 AGATGATAAGTCCTTCGGG
186 AGATGATAAGTCCTTCGGG
*
8476 CCATCCAT-AAACCTTCGAGTAGGA-GATGTTTCACATTAATTTG-AAATGGAAAAATGATGTTT
1 CCATCCATAAAACCTTCG-GTAGGATG-T-TTTCACATTAA-TTGAAAATGGAAAAAAGATGTTT
** * *
8538 TAAATTTTTAAAAACGAAGAATGCGAGTTTCAAAATTTCACAATGTTATAAGTCCTTCGGACCAT
62 GGAATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAAT-TTATAAGTCCTTCGGACCAT
*
8603 CAGTAAGGCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATG
126 CAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATG
*
8668 ATAAATCCTTCGGG
191 ATAAGTCCTTCGGG
8682 CCATCCATAAAACCTTCGGTAGGATGTTTTCACA-T--TTG--AATGGAAAAAAAGATG-TTGGA
1 CCATCCATAAAACCTTCGGTAGGATGTTTTCACATTAATTGAAAATGG-AAAAAAGATGTTTGGA
*
8741 ATTTTTGAAAACAAAGAATGCGAGTTTC-AAATTTCACGATTTATAAGTCCTTCGGACCATCAGT
65 ATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCGGACCATCAGT
* * *
8805 AAGTCTTTCGAGCATGGTGCTTAAATCCTTCGGGTTATCT-TAAGCCTTCAGAGCAAGATGATAA
130 AAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAA
8869 GTCCTTCGGG
195 GTCCTTCGGG
8879 CCATCCATAAAACCTTCGAGTAGGATGTTTTTCACATTAATTGAAAATGGAAAAAAGATGTTTGG
1 CCATCCATAAAACCTTCG-GTAGGATG-TTTTCACATTAATTGAAAATGGAAAAAAGATGTTTGG
8944 AATTTTTGAAAAC-AAGAATGCGAGTTTCAAAATTTCAC-A-TTATAAGTCCTTCGGACCATCAG
64 AATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCGGACCATCAG
9006 TAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATA
129 TAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATA
*
9071 AATCCTTCGGG
194 AGTCCTTCGGG
* *
9082 CCATCCATAAAACCTTCGGTA-GATGTTTTCACATGAATTGGAGAAT-GAAAAAAGATG-TTGGA
1 CCATCCATAAAACCTTCGGTAGGATGTTTTCACATTAATT-GAAAATGGAAAAAAGATGTTTGGA
*
9144 ATTTTTGAAAACAAAGAATGCGAGTTTC-AAATTTCACGATTTATAAGTCCTTCGGACCATCA-T
65 ATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCGGACCATCAGT
* * * *
9207 AAGTC-TTCGAGCATGGTGCTTAAATCCTTCGGGTTATTTATAAGCCTTTAGAGCAAGATGATAA
130 AAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAA
*
9271 GTCATTCGGG
195 GTCCTTCGGG
* * *
9281 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTGGAGAATGAAAAAAAGATG-TTGG
1 CCATCCATAAAACCTTC-GGTAGGATGTTTTCACATTAATT-GAAAATGGAAAAAAGATGTTTGG
* *
9345 AATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACGATTTATAAGTCCTTCGGGCCATC--
64 AATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCGGACCATCAG
* * * *
9408 -AAGTCTTTCGAGCACGGTGTTTAAATCCTTCGGGTCATCTATAAGCCTTTAGAGCAAGATGATA
129 TAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATA
9472 AGTCCTTCGGG
194 AGTCCTTCGGG
9483 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATTAATTTGAAAAT-GAAAAAACGATGTTTT
1 CCATCCATAAAACCTTC-GGTAGGATGTTTTCACATTAA-TTGAAAATGGAAAAAA-GATG-TTT
* * *
9547 GAGAAATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTC-CAATTCATAAGTCCTTCG
62 --G----G-AATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCG
*
9611 GGCCAT
120 GACCAT
9617 TGCCTTCACA
Statistics
Matches: 1054, Mismatches: 47, Indels: 81
0.89 0.04 0.07
Matches are distributed among these distances:
197 50 0.05
198 69 0.07
199 125 0.12
200 85 0.08
201 79 0.07
202 229 0.22
203 141 0.13
204 34 0.03
205 10 0.01
206 106 0.10
207 10 0.01
209 2 0.00
210 33 0.03
211 66 0.06
212 15 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (204 bp):
CCATCCATAAAACCTTCGGTAGGATGTTTTCACATTAATTGAAAATGGAAAAAAGATGTTTGGAA
TTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCGGACCATCAGTA
AGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAG
TCCTTCGGG
Found at i:9081 original size:41 final size:42
Alignment explanation
Indices: 8985--9086 Score: 125
Period size: 42 Copynumber: 2.5 Consensus size: 42
8975 ATTTCACATT
* * * * *
8985 ATAAGTCCTTCGGACCATCAGTAAGTCTTTCGAGCATGATGC
1 ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGC
* * *
9027 TTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATG-
1 ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGC
9068 ATAAATCCTTCGGGCCATC
1 ATAAATCCTTCGGGCCATC
9087 CATAAAACCT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 17 0.34
42 33 0.66
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (42 bp):
ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGC
Found at i:9160 original size:403 final size:407
Alignment explanation
Indices: 8265--9616 Score: 1899
Period size: 403 Copynumber: 3.3 Consensus size: 407
8255 TGAAGCAAAT
* *
8265 CCATCCATAAAACCTTCGGTAGGATGTTTTCACATTAATTTGAAAATGGAAAAATGATGTTTTAA
1 CCATCCATAAAACCTTCGGTAGGATGTTTTCACA-TAA-TTGAGAAT-GAAAAAAGATG---T--
* * *
8330 GATGATGTAATTTTTG-AAACGAAGAATGCAAGTTTCAAAATTTCAC-AATT-TAAGTCCTTCGG
58 --TG--G-AATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACGATTTATAAGTCCTTCGG
* * * *
8392 GCCATCAGTAAGTCTTTCGAGCATGATGCTTAAGTCCTTCGGGTTATCTGTAAGCCTTCAGAGCA
118 ACCATCAGTAAGTCTTTCGAGCATGGTGCTTAAATCCTTCGGGTTATCTATAAGCCTTCAGAGCA
*
8457 AGATGATAAGTCCTTCGGGCCATCCAT-AAACCTTCGAGTAGGA-GATGTTTCACATTAATTTG-
183 AGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGAGTAGGATG-TTTTTCACATTAA-TTGA
* ** * *
8519 AAATGGAAAAATGATGTTTTAAATTTTTAAAAACGAAGAATGCGAGTTTCAAAATTTCACAATGT
246 AAATGGAAAAAAGATGTTTGGAATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAAT-T
*
8584 TATAAGTCCTTCGGACCATCAGTAAGGCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGT
310 TATAAGTCCTTCGGACCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGT
8649 AAGCCTTTAGAGCAAGATGATAAATCCTTCGGG
375 AAGCCTTTAGAGCAAGATGATAAATCCTTCGGG
8682 CCATCCATAAAACCTTCGGTAGGATGTTTTCACAT--TT--GAATGGAAAAAAAGATGTTGGAAT
1 CCATCCATAAAACCTTCGGTAGGATGTTTTCACATAATTGAGAAT-G-AAAAAAGATGTTGGAAT
8743 TTTTGAAAACAAAGAATGCGAGTTTC-AAATTTCACGATTTATAAGTCCTTCGGACCATCAGTAA
64 TTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACGATTTATAAGTCCTTCGGACCATCAGTAA
8807 GTCTTTCGAGCATGGTGCTTAAATCCTTCGGGTTATCT-TAAGCCTTCAGAGCAAGATGATAAGT
129 GTCTTTCGAGCATGGTGCTTAAATCCTTCGGGTTATCTATAAGCCTTCAGAGCAAGATGATAAGT
8871 CCTTCGGGCCATCCATAAAACCTTCGAGTAGGATGTTTTTCACATTAATTGAAAATGGAAAAAAG
194 CCTTCGGGCCATCCATAAAACCTTCGAGTAGGATGTTTTTCACATTAATTGAAAATGGAAAAAAG
8936 ATGTTTGGAATTTTTGAAAAC-AAGAATGCGAGTTTCAAAATTTCAC-A-TTATAAGTCCTTCGG
259 ATGTTTGGAATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCGG
8998 ACCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCA
324 ACCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCA
9063 AGATGATAAATCCTTCGGG
389 AGATGATAAATCCTTCGGG
9082 CCATCCATAAAACCTTCGGTA-GATGTTTTCACATGAATTGGAGAATGAAAAAAGATGTTGGAAT
1 CCATCCATAAAACCTTCGGTAGGATGTTTTCACAT-AATT-GAGAATGAAAAAAGATGTTGGAAT
9146 TTTTGAAAACAAAGAATGCGAGTTTC-AAATTTCACGATTTATAAGTCCTTCGGACCATCA-TAA
64 TTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACGATTTATAAGTCCTTCGGACCATCAGTAA
* *
9209 GTC-TTCGAGCATGGTGCTTAAATCCTTCGGGTTATTTATAAGCCTTTAGAGCAAGATGATAAGT
129 GTCTTTCGAGCATGGTGCTTAAATCCTTCGGGTTATCTATAAGCCTTCAGAGCAAGATGATAAGT
* * * * *
9273 CATTCGGGCCATCCATAAAACCTTCGGGTAGGATG-TTTTCACATGAATTGGAGAATGAAAAAAA
194 CCTTCGGGCCATCCATAAAACCTTCGAGTAGGATGTTTTTCACATTAATT-GAAAATGGAAAAAA
*
9337 GATG-TTGGAATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACGATTTATAAGTCCTTCG
258 GATGTTTGGAATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCG
* * * * *
9401 GGCCATC---AAGTCTTTCGAGCACGGTGTTTAAATCCTTCGGGTCATCTATAAGCCTTTAGAGC
323 GACCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
*
9463 AAGATGATAAGTCCTTCGGG
388 AAGATGATAAATCCTTCGGG
*
9483 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATTAATTTGAAAATGAAAAAACGATGTTTTG
1 CCATCCATAAAACCTTC-GGTAGGATGTTTTCACA-TAA-TTGAGAATGAAAAAA-GATG--TT-
* * * *
9548 AGAAATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTC-CAATTCATAAGTCCTTCGG
59 -G----G-AATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACGATTTATAAGTCCTTCGG
*
9612 GCCAT
118 ACCAT
9617 TGCCTTCACA
Statistics
Matches: 869, Mismatches: 33, Indels: 70
0.89 0.03 0.07
Matches are distributed among these distances:
399 13 0.01
400 119 0.14
401 150 0.17
402 129 0.15
403 196 0.23
404 144 0.17
405 7 0.01
406 2 0.00
408 1 0.00
409 1 0.00
411 5 0.01
412 10 0.01
413 50 0.06
414 7 0.01
416 1 0.00
417 34 0.04
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (407 bp):
CCATCCATAAAACCTTCGGTAGGATGTTTTCACATAATTGAGAATGAAAAAAGATGTTGGAATTT
TTGAAAACAAAGAATGCGAGTTTCAAAATTTCACGATTTATAAGTCCTTCGGACCATCAGTAAGT
CTTTCGAGCATGGTGCTTAAATCCTTCGGGTTATCTATAAGCCTTCAGAGCAAGATGATAAGTCC
TTCGGGCCATCCATAAAACCTTCGAGTAGGATGTTTTTCACATTAATTGAAAATGGAAAAAAGAT
GTTTGGAATTTTTGAAAACAAAGAATGCGAGTTTCAAAATTTCACAATTTATAAGTCCTTCGGAC
CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAG
ATGATAAATCCTTCGGG
Found at i:13731 original size:9 final size:9
Alignment explanation
Indices: 13717--13746 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
13707 ATTTTCAATC
13717 AAATCATTT
1 AAATCATTT
13726 AAATCATTT
1 AAATCATTT
13735 -AATCATTT
1 AAATCATTT
13743 AAAT
1 AAAT
13747 AATAGTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (9 bp):
AAATCATTT
Found at i:14041 original size:39 final size:39
Alignment explanation
Indices: 13977--14061 Score: 134
Period size: 39 Copynumber: 2.2 Consensus size: 39
13967 TGCACTCATA
*
13977 GAGTATTCTCCATTTGTCTGAAGATGTCATGCAGTCGTG
1 GAGTCTTCTCCATTTGTCTGAAGATGTCATGCAGTCGTG
* * *
14016 GAGTCTTCTTCATTTTTTTGAAGATGTCATGCAGTCGTG
1 GAGTCTTCTCCATTTGTCTGAAGATGTCATGCAGTCGTG
14055 GAGTCTT
1 GAGTCTT
14062 TATATTTAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.19, C:0.16, G:0.25, T:0.40
Consensus pattern (39 bp):
GAGTCTTCTCCATTTGTCTGAAGATGTCATGCAGTCGTG
Found at i:14076 original size:39 final size:39
Alignment explanation
Indices: 13995--14080 Score: 122
Period size: 39 Copynumber: 2.2 Consensus size: 39
13985 TCCATTTGTC
**
13995 TGAAGATGTCATGCAGTCGTGGAGTCTTCTTCATTTTTT
1 TGAAGATGTCATGCAGTCGTGGAGTCTTCTTCATTTACT
14034 TGAAGATGTCATGCAGTCGTGGAGTCTT-TAT-ATTTAACT
1 TGAAGATGTCATGCAGTCGTGGAGTCTTCT-TCATTT-ACT
14073 TGAAGATG
1 TGAAGATG
14081 CGTGGAGCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
38 5 0.12
39 38 0.88
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.40
Consensus pattern (39 bp):
TGAAGATGTCATGCAGTCGTGGAGTCTTCTTCATTTACT
Found at i:20325 original size:23 final size:23
Alignment explanation
Indices: 20298--20373 Score: 97
Period size: 23 Copynumber: 3.4 Consensus size: 23
20288 TATCAATTAT
*
20298 AAATTTTAAATAATAATTAATCA
1 AAATTTAAAATAATAATTAATCA
20321 AAATTTAAAAT-ATCAATT-AT--
1 AAATTTAAAATAAT-AATTAATCA
*
20341 AAATTTCAAATAATAATTAATCA
1 AAATTTAAAATAATAATTAATCA
20364 AAATTTAAAA
1 AAATTTAAAA
20374 GAATTGATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
20 14 0.31
21 4 0.09
22 4 0.09
23 23 0.51
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
AAATTTAAAATAATAATTAATCA
Found at i:20332 original size:20 final size:20
Alignment explanation
Indices: 20309--20378 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
20299 AATTTTAAAT
20309 AATAATTAATCAAAATTTAA
1 AATAATTAATCAAAATTTAA
* *
20329 AAT-ATCAATTATAAATTTCAAA
1 AATAATTAATCA-AAATTT--AA
20351 TAATAATTAATCAAAATTTAA
1 -AATAATTAATCAAAATTTAA
*
20372 AAGAATT
1 AATAATT
20379 GATAAAAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
19 6 0.15
20 15 0.38
21 2 0.05
22 2 0.05
23 9 0.22
24 6 0.15
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.36
Consensus pattern (20 bp):
AATAATTAATCAAAATTTAA
Found at i:20337 original size:43 final size:43
Alignment explanation
Indices: 20288--20373 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
20278 TATATATTTT
*
20288 TATCAATTATAAATTTTAAATAATAATTAATCAAAATTTAAAA
1 TATCAATTATAAATTTCAAATAATAATTAATCAAAATTTAAAA
20331 TATCAATTATAAATTTCAAATAATAATTAATCAAAATTTAAAA
1 TATCAATTATAAATTTCAAATAATAATTAATCAAAATTTAAAA
20374 GAATTGATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (43 bp):
TATCAATTATAAATTTCAAATAATAATTAATCAAAATTTAAAA
Found at i:21917 original size:20 final size:20
Alignment explanation
Indices: 21892--21944 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
21882 GGTCGTTTTT
21892 AGCCGTTGGAGATGATTTGA
1 AGCCGTTGGAGATGATTTGA
21912 AGCCGTTGGAGATGATTTGA
1 AGCCGTTGGAGATGATTTGA
21932 AGCCGTTGGAGAT
1 AGCCGTTGGAGAT
21945 TAATTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.25, C:0.11, G:0.36, T:0.28
Consensus pattern (20 bp):
AGCCGTTGGAGATGATTTGA
Found at i:25883 original size:194 final size:193
Alignment explanation
Indices: 25540--25930 Score: 525
Period size: 194 Copynumber: 2.0 Consensus size: 193
25530 TATGATGATA
* * *
25540 TTATGCATAATCATCATTCATAATATTATTAGGTAATAATATATTATGTTACTAAAAATGTGGCA
1 TTATGCATAAACATCATTCATAATATTATTAGGTAATAATATATTATGTCACTAAAAATGTGACA
** * * *
25605 ATATCTTTTTCGTCACATATAAGTTGATTTTAATGCATTATTTGTGACAATATAAACGATTAATA
66 ATATCTCATTCGTCACATATAAGTTGATTTTAATGCATAATTCGTGACAATATAAACGATCAATA
* ** *
25670 ACGAGATTTTATTTAATTTAGTGATGTAATCAACTGTCATAGAATATAAATTATAAAGTGACG
131 ACGAAATTTTACATAATTTAGTGATATAATCAACTGTCATAGAATATAAATTATAAAGTGACG
* * *
25733 TTATGCATAAACGTCATTCATAATATTATTAGGTAA-AGTTTATATTATGTCACTAAAAATTTGA
1 TTATGCATAAACATCATTCATAATATTATTAGGTAATA--ATATATTATGTCACTAAAAATGTGA
* * *
25797 CAATATCTCATTCGTCACATATAGGTTGATTTTAATGTATAATTCGTGACGATATAAATC-ATCA
64 CAATATCTCATTCGTCACATATAAGTTGATTTTAATGCATAATTCGTGACAATATAAA-CGATCA
* ** * * *
25861 ATAACGAAATTTTACATAATTTAGTGATATAATTAGTTGTCATTGAATATTAATTATATAGTGAC
128 ATAACGAAATTTTACATAATTTAGTGATATAATCAACTGTCATAGAATATAAATTATAAAGTGAC
25926 G
193 G
25927 TTAT
1 TTAT
25931 ATATAAATGC
Statistics
Matches: 171, Mismatches: 24, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
192 1 0.01
193 34 0.20
194 135 0.79
195 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (193 bp):
TTATGCATAAACATCATTCATAATATTATTAGGTAATAATATATTATGTCACTAAAAATGTGACA
ATATCTCATTCGTCACATATAAGTTGATTTTAATGCATAATTCGTGACAATATAAACGATCAATA
ACGAAATTTTACATAATTTAGTGATATAATCAACTGTCATAGAATATAAATTATAAAGTGACG
Found at i:31594 original size:16 final size:16
Alignment explanation
Indices: 31569--31601 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
31559 ATTCATACAA
31569 AGCATCTGAATCATTC
1 AGCATCTGAATCATTC
*
31585 AGCATTTGAATCATTC
1 AGCATCTGAATCATTC
31601 A
1 A
31602 ACGCTTAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (16 bp):
AGCATCTGAATCATTC
Found at i:33776 original size:3 final size:3
Alignment explanation
Indices: 33770--33829 Score: 68
Period size: 3 Copynumber: 20.0 Consensus size: 3
33760 TTTTTTCATT
* *
33770 TTA TTA TTA TTA TTA CTA TTA -TA TTA TTA TTTA TTT TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
* *
33815 ATA TTT TTA TTA TTA
1 TTA TTA TTA TTA TTA
33830 CAAACATGCC
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
2 2 0.04
3 42 0.89
4 3 0.06
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:35203 original size:35 final size:37
Alignment explanation
Indices: 35160--35234 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
35150 ACTATTATTA
35160 TTATTTAGTCATGT-AA-ATATATATATAAATAATAT
1 TTATTTAGTCATGTAAATATATATATATAAATAATAT
35195 TTATTTAGTCATGTAAATATATATATATAAATAATAT
1 TTATTTAGTCATGTAAATATATATATATAAATAATAT
35232 TTA
1 TTA
35235 ACTACTCAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 14 0.37
36 2 0.05
37 22 0.58
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (37 bp):
TTATTTAGTCATGTAAATATATATATATAAATAATAT
Found at i:36994 original size:2 final size:2
Alignment explanation
Indices: 36987--37013 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
36977 AAATGATTTC
36987 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
37014 ACTAATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:38322 original size:3 final size:3
Alignment explanation
Indices: 38314--38356 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
38304 CCCTTTATAT
38314 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
38357 GATTGTGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:48827 original size:113 final size:113
Alignment explanation
Indices: 48625--48959 Score: 487
Period size: 113 Copynumber: 3.0 Consensus size: 113
48615 TAGAAAATAT
*
48625 TCAAATTCATCACTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATTCATCACTTGATGGATCAACATTGTCAGGTAGAGTTCATAATGAGAAGAACTCATCTGA
* *
48690 AGAAGGAAGAGGAAGTTCAAAATGAGAAGAATTTGTTCAACCTTTCGC
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTCGC
* * *
48738 TCGAATTCATCACTTGATGGATCAACATTGTCAGGTAGAGTTCATAATGAAAAGAACTCATTTGA
1 TCAAATTCATCACTTGATGGATCAACATTGTCAGGTAGAGTTCATAATGAGAAGAACTCATCTGA
* * *
48803 AGAAGGAAGAATAAATTCATAATGAAAAGAATTTGTTCAACCTTTCGC
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTCGC
* * * * *
48851 TCAAATTCATCACTCGATGGATCATCATT-TCCAAAG-AAAGTTCATAATGAGAAGAACTTATCT
1 TCAAATTCATCACTTGATGGATCAACATTGT-C-AGGTAGAGTTCATAATGAGAAGAACTCATCT
* *
48914 GAAG-AGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAGCCTTT
64 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTT
48960 TGCATGACTC
Statistics
Matches: 198, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
112 38 0.19
113 158 0.80
114 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (113 bp):
TCAAATTCATCACTTGATGGATCAACATTGTCAGGTAGAGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTCGC
Found at i:48952 original size:20 final size:20
Alignment explanation
Indices: 48890--48953 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
48880 TCCAAAGAAA
48890 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* ***
48910 -ATC-TGAA-GAGGAAGAAGAA
1 GTTCAT-AATGA-GAAGAACTT
48929 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
48949 GTTCA
1 GTTCA
48954 GCCTTTTGCA
Statistics
Matches: 31, Mismatches: 8, Indels: 10
0.63 0.16 0.20
Matches are distributed among these distances:
18 3 0.10
19 10 0.32
20 15 0.48
21 3 0.10
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.25
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:49439 original size:3 final size:3
Alignment explanation
Indices: 49433--49492 Score: 77
Period size: 3 Copynumber: 20.0 Consensus size: 3
49423 TTTTTTCATT
* *
49433 TTA TTA TTA TTA TTA CTA TTA -TA TTA TTA TTTA TTT TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
*
49478 ATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
49493 CAAACAGGCC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
2 2 0.04
3 44 0.90
4 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:55485 original size:44 final size:44
Alignment explanation
Indices: 55389--55506 Score: 110
Period size: 44 Copynumber: 2.7 Consensus size: 44
55379 AGCAAGGAAG
* *
55389 CAGTATGCCAGATCAACCGAGAACAGTAAACACAAATCGAAGAG
1 CAGTATGCCAGATCAACCGAGAACAGTAAACACAAATCGAAAAA
* * * * * ** *
55433 CAGAATGCCAGATTAACGGAGAGCAGTAACCGTAAATTGAAAAA
1 CAGTATGCCAGATCAACCGAGAACAGTAAACACAAATCGAAAAA
* * * *
55477 CAGTATGCCAAAACAACCAAGAGCAGTAAA
1 CAGTATGCCAGATCAACCGAGAACAGTAAA
55507 GGAGCGATCT
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.47, C:0.20, G:0.20, T:0.13
Consensus pattern (44 bp):
CAGTATGCCAGATCAACCGAGAACAGTAAACACAAATCGAAAAA
Found at i:60916 original size:64 final size:64
Alignment explanation
Indices: 60825--61001 Score: 207
Period size: 64 Copynumber: 2.8 Consensus size: 64
60815 TTTTAAAAAT
* * *
60825 ACATCGAATGAAATTTGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGGA-A
1 ACATCGAATGCAATTAGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAGTAATAA-GACA
* * *
60889 ACATCGAATGCAATTAGTGCATGGATGCATAAGGCA-TGCATCGATGCATCCCAGTAATAATACA
1 ACATCGAATGCAATTAGTGCATCGATGCATAA-GTAGTGCATCGATGCATCCCAGTAATAAGACA
* * * * *
60953 ACATCAAATACATTTTA-TGCACCGATGCATCAGTAGTGCATCGATGCAT
1 ACATCGAATGCA-ATTAGTGCATCGATGCATAAGTAGTGCATCGATGCAT
61002 ACCTTCATTA
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
63 3 0.03
64 88 0.92
65 5 0.05
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (64 bp):
ACATCGAATGCAATTAGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAGTAATAAGACA
Found at i:61862 original size:21 final size:21
Alignment explanation
Indices: 61837--61882 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
61827 GTATATGATT
61837 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
61858 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
61879 CTTA
1 CTTA
61883 TGGACATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.35
Consensus pattern (21 bp):
CTTAAGGAATGATATGTGGTC
Found at i:61941 original size:22 final size:22
Alignment explanation
Indices: 61899--61941 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
61889 TTATTATATG
**
61899 GCACTACGGTGCAATTCTACGT
1 GCACTACGGTGCAATGATACGT
*
61921 GCACTTCGGTGCAATGATACG
1 GCACTACGGTGCAATGATACG
61942 AGCTGTGGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (22 bp):
GCACTACGGTGCAATGATACGT
Found at i:66375 original size:64 final size:64
Alignment explanation
Indices: 66307--66527 Score: 241
Period size: 64 Copynumber: 3.5 Consensus size: 64
66297 TTGAAGGTGT
** **
66307 ATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATTTGTG
1 ATCGATGCATAAGTAGTGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAATTTGTG
66370 C
64 C
** * *
66371 ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGGAAACATTGAATGCAATTAGTGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTTGTGC
* * * * * * *
66435 ATGGATGCATAAGGCA-TGCATCGATGCATCCCAGTAATAATACAACATCGAATACATTTTATGC
1 ATCGATGCATAA-GTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTTGTGC
* *
66499 ACCGATGCATCAGTAGTGCATCGATGCAT
1 ATCGATGCATAAGTAGTGCATCGATGCAT
66528 ACCTTCATTA
Statistics
Matches: 130, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
63 2 0.02
64 121 0.93
65 7 0.05
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (64 bp):
ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTTGTGC
Found at i:67397 original size:21 final size:21
Alignment explanation
Indices: 67372--67480 Score: 200
Period size: 21 Copynumber: 5.2 Consensus size: 21
67362 GTATATGATT
67372 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
*
67393 CTTAAGGAATGATATGTGGTT
1 CTTAAGGAATGATATGTGGTC
67414 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
*
67435 CTTAAGTAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
67456 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
67477 CTTA
1 CTTA
67481 TCGATATTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 84 1.00
ACGTcount: A:0.28, C:0.09, G:0.27, T:0.36
Consensus pattern (21 bp):
CTTAAGGAATGATATGTGGTC
Found at i:67758 original size:21 final size:21
Alignment explanation
Indices: 67734--67789 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
67724 TAATTCGATG
67734 ATAATGATAGA-GATAATGATA
1 ATAAT-ATAGATGATAATGATA
* *
67755 ATAATATATATGATAATGCTA
1 ATAATATAGATGATAATGATA
67776 ATAA-AGTAGATGAT
1 ATAATA-TAGATGAT
67790 GATATATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 5 0.17
21 25 0.83
ACGTcount: A:0.50, C:0.02, G:0.16, T:0.32
Consensus pattern (21 bp):
ATAATATAGATGATAATGATA
Found at i:70625 original size:60 final size:59
Alignment explanation
Indices: 70507--70652 Score: 156
Period size: 60 Copynumber: 2.4 Consensus size: 59
70497 TACACGTTTG
* *
70507 AACATTTTAATTTCATCCTCAAAATATGATTCTCACTCTAAATTAATCCTCGATCTTTTT
1 AACA-TTTAATTTCATCCTCAAACTATGATTCTCACTCTAAATTAATCCTCGATCTTTTA
* * *
70567 AATATTCTAATTTCATCCTCAAACTATGATATC-CATTCTAAATTAGTCC-C-ATAACTTTTA
1 AACATT-TAATTTCATCCTCAAACTATGAT-TCTCACTCTAAATTAATCCTCGAT--CTTTTA
*
70627 AACATTTCAATTTTATCCT-AAACTAT
1 AACATTT-AATTTCATCCTCAAACTAT
70653 TGGTATATGC
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
58 2 0.03
59 11 0.15
60 59 0.80
61 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (59 bp):
AACATTTAATTTCATCCTCAAACTATGATTCTCACTCTAAATTAATCCTCGATCTTTTA
Found at i:75631 original size:23 final size:23
Alignment explanation
Indices: 75605--75661 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
75595 AATCTTATAT
* *
75605 GGCACTACGGTGCAATTCTATGC
1 GGCACTTCGGTGCAATTCTACGC
* *
75628 GGCACTTCGGTGTAATTCTACGT
1 GGCACTTCGGTGCAATTCTACGC
75651 GGCACTTCGGT
1 GGCACTTCGGT
75662 ACATTTATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.18, C:0.25, G:0.28, T:0.30
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:75672 original size:23 final size:23
Alignment explanation
Indices: 75604--75672 Score: 57
Period size: 23 Copynumber: 3.0 Consensus size: 23
75594 CAATCTTATA
* * * *
75604 TGGCACTACGGTGCAATTCTATG
1 TGGCACTTCGGTACAATTATACG
* ** *
75627 CGGCACTTCGGTGTAATTCTACG
1 TGGCACTTCGGTACAATTATACG
*
75650 TGGCACTTCGGTACATTTATACG
1 TGGCACTTCGGTACAATTATACG
75673 AGCTATGGTG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (23 bp):
TGGCACTTCGGTACAATTATACG
Found at i:81822 original size:19 final size:20
Alignment explanation
Indices: 81784--81823 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
81774 CCAGAAATTG
* *
81784 TTCAAGGTGTATCGATGCAC
1 TTCAAGGTGCATCAATGCAC
81804 TTCAA-GTGCATCAATGCAC
1 TTCAAGGTGCATCAATGCAC
81823 T
1 T
81824 ACTTGAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (20 bp):
TTCAAGGTGCATCAATGCAC
Found at i:82645 original size:23 final size:23
Alignment explanation
Indices: 82593--82646 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
82583 CAATCTTATA
*
82593 TGGCACTACGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* *
82616 CGACACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
82639 TGGCACTT
1 TGGCACTT
82647 TGATGCATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:82653 original size:23 final size:23
Alignment explanation
Indices: 82604--82653 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
82594 GGCACTACGG
*
82604 TGCAATTCTACGCGACACTTCGG
1 TGCAATTCTACGCGACACTTCGA
* * *
82627 TGCAATTCTACGTGGCACTTTGA
1 TGCAATTCTACGCGACACTTCGA
82650 TGCA
1 TGCA
82654 TTTATACGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (23 bp):
TGCAATTCTACGCGACACTTCGA
Found at i:84051 original size:3 final size:3
Alignment explanation
Indices: 84043--84082 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
84033 AATATAAATT
*
84043 TAA TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
84083 ATAGGCAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:84085 original size:16 final size:16
Alignment explanation
Indices: 84044--84082 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
84034 ATATAAATTT
84044 AATAATAATAATAATA
1 AATAATAATAATAATA
84060 AATAATAATAATAATA
1 AATAATAATAATAATA
84076 AA-AATAA
1 AATAATAA
84083 ATAGGCAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AATAATAATAATAATA
Found at i:84316 original size:39 final size:39
Alignment explanation
Indices: 84261--85105 Score: 711
Period size: 39 Copynumber: 21.5 Consensus size: 39
84251 AGGTTGAATA
* *
84261 AGTTCTTCAGACTATGAAATTCTTCTTTCTCTTCAGATG
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
* ** *
84300 AGTTCTTCAAATTATGACCTCCTTCTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
* * *
84339 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
* * * *
84378 AGTTCTTCAGATTATGAACTCCTTCTTCCTCTTTAGACGTT
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGA--TG
* *** * * ** ****** * *
84419 A-TTTTATCTCCTTCTGCCGATAGAATCAAGCAAAAGGTTGA-ATA
1 AGTTCT-TCAGATTAT---GA-A-ATTC-TTCTTCCTCTTCAGATG
*
84463 AGTTCTTCAGACTATGAAATTCTTCTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
* *
84502 AGTTCTTCAAACTATGAAATTCTTCTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
*
84541 AGTTCTTCAGATTATG-AACTCATTCTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAAATTC-TTCTTCCTCTTCAGATG
*
84580 AGTTCTTCAGATTATG-AACTCATTCTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAAATTC-TTCTTCCTCTTCAGATG
* * *
84619 AGTTCTTCATATTAT-AAACTCCTTTTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAAA-TTCTTCTTCCTCTTCAGATG
* *
84658 AGTTCTTCAGATTATGAACTTCTTCTTCCTCTTCAGACG
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
* * *
84697 AGTTCTTCAGATTATG-AACTCTTTTTTCCTCTTCAGACG
1 AGTTCTTCAGATTATGAAATTC-TTCTTCCTCTTCAGATG
* * * *
84736 AGTTCTTCAGATTAT-TAACTCTTTTTTCCTCTTCAGACG
1 AGTTCTTCAGATTATGAAATTC-TTCTTCCTCTTCAGATG
* * * * *
84775 AGTTCTTCAGATTATGAACTCCTTCTTCCTTTTCATACG
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
* * * * * *
84814 AGTTCTTCAGACTATGAACTCCTTCTCCCTTTTCAGACG
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
* * * * *
84853 AGTTCTTCAGATTATG-AACTCTTTTTTTCTTTTCAGACG
1 AGTTCTTCAGATTATGAAATTC-TTCTTCCTCTTCAGATG
* * * * **
84892 AGTTCTTCAGATTGTGAACTCCTTTTTCCTCTTCAGACA
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
* * *
84931 AGTTCTTCAGATTATG-AACTCATTCTTCCTCTTCAAAAG
1 AGTTCTTCAGATTATGAAATTC-TTCTTCCTCTTCAGATG
* * *
84970 AGTTCTTCAGATTATG-AACTCATTTTTCCTCTTCATATG
1 AGTTCTTCAGATTATGAAATTC-TTCTTCCTCTTCAGATG
* * * * *
85009 AGTTCTTCAGATTATGAACTCCTTTTTTCTCTTCAGACG
1 AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
* * * *
85048 AGTTCTTCAGATTATGAACTCCCTTTTTCCTCTTCAGATA
1 AGTTCTTCAGATTATGAAAT-TCTTCTTCCTCTTCAGATG
85088 AGTTCTTCAGATTATGAA
1 AGTTCTTCAGATTATGAA
85106 CTCCTTTTGG
Statistics
Matches: 676, Mismatches: 107, Indels: 45
0.82 0.13 0.05
Matches are distributed among these distances:
38 15 0.02
39 587 0.87
40 47 0.07
41 9 0.01
44 8 0.01
45 4 0.01
46 2 0.00
47 4 0.01
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (39 bp):
AGTTCTTCAGATTATGAAATTCTTCTTCCTCTTCAGATG
Found at i:84392 original size:78 final size:78
Alignment explanation
Indices: 84261--85111 Score: 934
Period size: 78 Copynumber: 10.8 Consensus size: 78
84251 AGGTTGAATA
* * * * *
84261 AGTTCTTCAGACTATGAAATTCTTCTTT-CTCTTCAGATGAGTTCTTCAAATTATGACCTCCTTC
1 AGTTCTTCAGATTATGAACTCCTT-TTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTC
84325 TTCCTCTTCAGATG
65 TTCCTCTTCAGATG
84339 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
* *
84404 TCCTCTTTAGACGTT
66 TCCTCTTCAGA--TG
* * *** ********** * * * *
84419 ATTTTATCTCCTTCTGCCGATAGAA-TCAAGCAAAAGGTTGA-ATAAGTTCTTCAGACTATGAAA
1 A----GT-T-CTTCAGATTAT-GAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAAC
*
84482 TTCTTCTTCCTCTTCAGATG
59 TCCTTCTTCCTCTTCAGATG
* * * * * *
84502 AGTTCTTCAAACTATGAAATTCTTCTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCATTCT
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
84567 TCCTCTTCAGATG
66 TCCTCTTCAGATG
* * * * *
84580 AGTTCTTCAGATTATGAACTCATTCTTCCTCTTCAGATGAGTTCTTCATATTATAAACTCCTTTT
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
84645 TCCTCTTCAGATG
66 TCCTCTTCAGATG
* * * * *
84658 AGTTCTTCAGATTATGAACTTCTTCTTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCTTTTT
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
*
84723 TCCTCTTCAGACG
66 TCCTCTTCAGATG
* * *
84736 AGTTCTTCAGATTATTAACTCTTTTTTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTCT
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
* * *
84801 TCCTTTTCATACG
66 TCCTCTTCAGATG
* * * * * * *
84814 AGTTCTTCAGACTATGAACTCCTTCTCCCTTTTCAGACGAGTTCTTCAGATTATGAACTCTTTTT
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
* * *
84879 TTCTTTTCAGACG
66 TCCTCTTCAGATG
* ** *
84892 AGTTCTTCAGATTGTGAACTCCTTTTTCCTCTTCAGACAAGTTCTTCAGATTATGAACTCATTCT
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
* *
84957 TCCTCTTCAAAAG
66 TCCTCTTCAGATG
* * *
84970 AGTTCTTCAGATTATGAACTCATTTTTCCTCTTCATATGAGTTCTTCAGATTATGAACTCCTTTT
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
* *
85035 TTCTCTTCAGACG
66 TCCTCTTCAGATG
*
85048 AGTTCTTCAGATTATGAACTCCCTTTTTCCTCTTCAGATAAGTTCTTCAGATTATGAACTCCTT
1 AGTTCTTCAGATTATGAACT-CCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTT
85112 TTGGAAATGT
Statistics
Matches: 651, Mismatches: 109, Indels: 25
0.83 0.14 0.03
Matches are distributed among these distances:
76 3 0.00
77 15 0.02
78 536 0.82
79 41 0.06
80 2 0.00
83 2 0.00
84 1 0.00
85 36 0.06
86 12 0.02
87 3 0.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (78 bp):
AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
TCCTCTTCAGATG
Found at i:84625 original size:117 final size:117
Alignment explanation
Indices: 84261--85105 Score: 903
Period size: 117 Copynumber: 7.2 Consensus size: 117
84251 AGGTTGAATA
* * *
84261 AGTTCTTCAGACTATGAAATTCTTCTTT-CTCTTCAGATGAGTTCTTCAAATTATGACCTCCTTC
1 AGTTCTTCAGATTATGAAATTCTT-TTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTC
* *
84325 TTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGATG
65 TTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTCTTCCTCTTCAGATG
* * * * * * * ***
84378 AGTTCTTCAGATTATGAACTCCTTCTTCCTCTTTAGACGTTATTTTATCTCCTTCTGCCGATAGA
1 AGTTCTTCAGATTATGAAATTCTTTTTCCTCTTCAGA--TGA----GT-T-CTTCAGATTAT-GA
*** ****** * ** * * *
84443 A-TCAAGCAAAAGGTTGA-ATAAGTTCTTCAGACTATGAAATTCTTCTTCCTCTTCAGATG
57 ACTCCTTCTTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTCTTCCTCTTCAGATG
* * * *
84502 AGTTCTTCAAACTATGAAATTCTTCTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCATTCT
1 AGTTCTTCAGATTATGAAATTCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
* *
84567 TCCTCTTCAGATGAGTTCTTCAGATTATGAACTCATTCTTCCTCTTCAGATG
66 TCCTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTCTTCCTCTTCAGATG
* * *
84619 AGTTCTTCATATTAT-AAACTCCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTTCTTC
1 AGTTCTTCAGATTATGAAA-TTCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTC
* * *
84683 TTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCTTTTTTCCTCTTCAGACG
65 TTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTCTTCCTCTTCAGATG
* * *
84736 AGTTCTTCAGATTAT-TAACTCTTTTTTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTC
1 AGTTCTTCAGATTATGAAATTC-TTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTC
* * * * * *
84800 TTCCTTTTCATACGAGTTCTTCAGACTATGAACTCCTTCTCCCTTTTCAGACG
65 TTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTCTTCCTCTTCAGATG
* * * * * *
84853 AGTTCTTCAGATTATG-AACTCTTTTTTTCTTTTCAGACGAGTTCTTCAGATTGTGAACTCCTTT
1 AGTTCTTCAGATTATGAAATTC-TTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTC
* * * *
84917 TTCCTCTTCAGACAAGTTCTTCAGATTATGAACTCATTCTTCCTCTTCAAAAG
65 TTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTCTTCCTCTTCAGATG
* * *
84970 AGTTCTTCAGATTATG-AACTCATTTTTCCTCTTCATATGAGTTCTTCAGATTATGAACTCCTTT
1 AGTTCTTCAGATTATGAAATTC-TTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTC
* * *
85034 TTTCTCTTCAGACGAGTTCTTCAGATTATGAACTCCCTTTTTCCTCTTCAGATA
65 TTCCTCTTCAGACGAGTTCTTCAGATTATGAACT-CCTTCTTCCTCTTCAGATG
85088 AGTTCTTCAGATTATGAA
1 AGTTCTTCAGATTATGAA
85106 CTCCTTTTGG
Statistics
Matches: 609, Mismatches: 102, Indels: 32
0.82 0.14 0.04
Matches are distributed among these distances:
115 3 0.00
116 20 0.03
117 465 0.76
118 31 0.05
119 3 0.00
122 2 0.00
123 1 0.00
124 70 0.11
125 12 0.02
126 2 0.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (117 bp):
AGTTCTTCAGATTATGAAATTCTTTTTCCTCTTCAGATGAGTTCTTCAGATTATGAACTCCTTCT
TCCTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTCTTCCTCTTCAGATG
Found at i:85112 original size:39 final size:39
Alignment explanation
Indices: 84463--85113 Score: 870
Period size: 39 Copynumber: 16.7 Consensus size: 39
84453 AGGTTGAATA
* * * * *
84463 AGTTCTTCAGACTATGAAATTCTTCTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * * * * *
84502 AGTTCTTCAAACTATGAAATTCTTCTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * *
84541 AGTTCTTCAGATTATGAACTCATTCTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * *
84580 AGTTCTTCAGATTATGAACTCATTCTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * *
84619 AGTTCTTCATATTATAAACTCCTTTTTCCTCTTCAGATG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* *
84658 AGTTCTTCAGATTATGAACTTCTTCTTCCTCTTCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
*
84697 AGTTCTTCAGATTATGAACTCTTTTTTCCTCTTCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* *
84736 AGTTCTTCAGATTATTAACTCTTTTTTCCTCTTCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * *
84775 AGTTCTTCAGATTATGAACTCCTTCTTCCTTTTCATACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * * *
84814 AGTTCTTCAGACTATGAACTCCTTCTCCCTTTTCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * *
84853 AGTTCTTCAGATTATGAACTCTTTTTTTCTTTTCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* *
84892 AGTTCTTCAGATTGTGAACTCCTTTTTCCTCTTCAGACA
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * * *
84931 AGTTCTTCAGATTATGAACTCATTCTTCCTCTTCAAAAG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * *
84970 AGTTCTTCAGATTATGAACTCATTTTTCCTCTTCATATG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
*
85009 AGTTCTTCAGATTATGAACTCCTTTTTTCTCTTCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
**
85048 AGTTCTTCAGATTATGAACTCCCTTTTTCCTCTTCAGATA
1 AGTTCTTCAGATTATGAACT-CCTTTTTCCTCTTCAGACG
85088 AGTTCTTCAGATTATGAACTCCTTTT
1 AGTTCTTCAGATTATGAACTCCTTTT
85114 GGAAATGTTT
Statistics
Matches: 558, Mismatches: 53, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
39 522 0.94
40 36 0.06
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.43
Consensus pattern (39 bp):
AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
Found at i:85426 original size:45 final size:46
Alignment explanation
Indices: 85172--85695 Score: 496
Period size: 45 Copynumber: 11.5 Consensus size: 46
85162 AAAACATCCG
* * * *
85172 GCACTGAAGATCTTATGGATGACCCGAAGACTTTTTGAAAAC-TTCCT
1 GCACTGAAGGTCTTATAGATGACCCGAAGGC--TTTGAAAACATTCAT
* * * *
85219 GCACTGTAGGTCTTATGGATGACCCGAAGACTTTTTGAAAACA-TCTT
1 GCACTGAAGGTCTTATAGATGACCCGAAGGC--TTTGAAAACATTCAT
* * * *
85266 GCACTGTAGGTCTTATGGATGACCCGAAGGCTCTTTGAAGACA-TCCT
1 GCACTGAAGGTCTTATAGATGACCCGAAGG--CTTTGAAAACATTCAT
* * * * *
85313 GTACTGTAGGTCTTATGGATGACCCGAAGGCTTTTTGAAAATA-TCCT
1 GCACTGAAGGTCTTATAGATGACCCGAAGGC--TTTGAAAACATTCAT
* * *
85360 GCACTGTAGGTATTATGGATGACCCGAAGGCTTTGAAAACATTC-T
1 GCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATTCAT
* * * *
85405 GCACTAAAGGTCTTACAGATGACCCGAAGGTTTTGAAAACA-TCCT
1 GCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATTCAT
* * * *
85450 GCACTGAAGGTCTTACAGATGACTCAAAGGTTTTGAAAACA-TCAT
1 GCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATTCAT
* *
85495 GCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAACA-TCAT
1 GCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATTCAT
* * *
85540 GCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAATA-TCAT
1 GCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATTCAT
* *
85585 GCACTGTAGGTCTTATAGATGACCCGAAGG-TTTTAAAA-ATATCAT
1 GCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACAT-TCAT
* * * * * *
85630 GCACTGTAGGTCTTATGGATTACCCAAAAGTTTTGAAAACA-TCAT
1 GCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATTCAT
* *
85675 ACACTGAAGGTCTTACAGATG
1 GCACTGAAGGTCTTATAGATG
85696 TGGGAAATAG
Statistics
Matches: 428, Mismatches: 38, Indels: 24
0.87 0.08 0.05
Matches are distributed among these distances:
43 1 0.00
44 9 0.02
45 253 0.59
46 9 0.02
47 155 0.36
49 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (46 bp):
GCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATTCAT
Found at i:85485 original size:90 final size:90
Alignment explanation
Indices: 85162--85695 Score: 602
Period size: 90 Copynumber: 5.8 Consensus size: 90
85152 TTGCTATTTC
* * ** * * *
85162 AAAACATCCGGCACTGAAGATCTTATGGATGACCCGAAGACTTTTTGAAAACTTCCTGCACTGTA
1 AAAACATCCTGCACTGAAGGTCTTATGGATGACCC-AA-AGGTTTTGAAAACATCATGCACTGAA
** *
85227 GGTCTTATGGATGACCCGAAGACTTTTTG
64 GGTCTTACAGATGACCCGAAG--GTTTTG
* * * * * * *
85256 AAAACATCTTGCACTGTAGGTCTTATGGATGACCCGAAGGCTCTTTGAAGACATCCTGTACTGTA
1 AAAACATCCTGCACTGAAGGTCTTATGGATGACCCAAAGG-T-TTTGAAAACATCATGCACTGAA
**
85321 GGTCTTATGGATGACCCGAAGGCTTTTTG
64 GGTCTTACAGATGACCCGAAGG--TTTTG
* * * * * *
85350 AAAATATCCTGCACTGTAGGTATTATGGATGACCCGAAGGCTTTGAAAACATTC-TGCACTAAAG
1 AAAACATCCTGCACTGAAGGTCTTATGGATGACCCAAAGGTTTTGAAAACA-TCATGCACTGAAG
85414 GTCTTACAGATGACCCGAAGGTTTTG
65 GTCTTACAGATGACCCGAAGGTTTTG
** *
85440 AAAACATCCTGCACTGAAGGTCTTACAGATGACTCAAAGGTTTTGAAAACATCATGCACTGAAGG
1 AAAACATCCTGCACTGAAGGTCTTATGGATGACCCAAAGGTTTTGAAAACATCATGCACTGAAGG
85505 TCTTACAGATGACCCGAAGGTTTTG
66 TCTTACAGATGACCCGAAGGTTTTG
* ** * * *
85530 AAAACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAATATCATGCACTGTAGG
1 AAAACATCCTGCACTGAAGGTCTTATGGATGACCCAAAGGTTTTGAAAACATCATGCACTGAAGG
* *
85595 TCTTATAGATGACCCGAAGGTTTTA
66 TCTTACAGATGACCCGAAGGTTTTG
* * * * * *
85620 AAAATATCATGCACTGTAGGTCTTATGGATTACCCAAAAGTTTTGAAAACATCATACACTGAAGG
1 AAAACATCCTGCACTGAAGGTCTTATGGATGACCCAAAGGTTTTGAAAACATCATGCACTGAAGG
85685 TCTTACAGATG
66 TCTTACAGATG
85696 TGGGAAATAG
Statistics
Matches: 386, Mismatches: 48, Indels: 16
0.86 0.11 0.04
Matches are distributed among these distances:
89 2 0.01
90 231 0.60
92 36 0.09
93 4 0.01
94 113 0.29
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (90 bp):
AAAACATCCTGCACTGAAGGTCTTATGGATGACCCAAAGGTTTTGAAAACATCATGCACTGAAGG
TCTTACAGATGACCCGAAGGTTTTG
Found at i:85525 original size:20 final size:20
Alignment explanation
Indices: 85500--85570 Score: 54
Period size: 20 Copynumber: 3.3 Consensus size: 20
85490 ATCATGCACT
85500 GAAGGTCTTACAGATGACCC
1 GAAGGTCTTACAGATGACCC
* * *
85520 GAAGGTTTTGAAAACATCATG-CACT
1 GAAGGTCTT----ACA-GATGAC-CC
85545 GAAGGTCTTACAGATGACCC
1 GAAGGTCTTACAGATGACCC
85565 GAAGGT
1 GAAGGT
85571 TTTGAAAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
20 18 0.47
21 4 0.11
24 4 0.11
25 12 0.32
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (20 bp):
GAAGGTCTTACAGATGACCC
Found at i:85534 original size:135 final size:135
Alignment explanation
Indices: 85162--85695 Score: 647
Period size: 135 Copynumber: 3.9 Consensus size: 135
85152 TTGCTATTTC
* * * ** * *
85162 AAAACATCCGGCACTGAAGATCTTATGGATGACCCGAAGACTTTTTGAAAACTTCCTGCACTGTA
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCC-AA-AGGTTTTGAAAACATCATGCACTGTA
* * * **
85227 GGTCTTATGGATGACCCGAAGACTTTTTGAAAACATCTTGCACTGTAGGTCTTATGGATGACCCG
64 GGTCTTATGGATGACCCGAAG--GTTTTGAAAACATCATGCACTGAAGGTCTTACAGATGACCCG
85292 AAGGCTCTTTG
127 AAGG-T-TTTG
* * * * * * *
85303 AAGACATCCTGTACTGTAGGTCTTATGGATGACCCGAAGGCTTTTTGAAAATATCCTGCACTGTA
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCAAAGG--TTTTGAAAACATCATGCACTGTA
* * *
85368 GGTATTATGGATGACCCGAAGGCTTTGAAAACATTC-TGCACTAAAGGTCTTACAGATGACCCGA
64 GGTCTTATGGATGACCCGAAGGTTTTGAAAACA-TCATGCACTGAAGGTCTTACAGATGACCCGA
85432 AGGTTTTG
128 AGGTTTTG
* * *
85440 AAAACATCCTGCACTGAAGGTCTTACAGATGACTCAAAGGTTTTGAAAACATCATGCACTGAAGG
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCAAAGGTTTTGAAAACATCATGCACTGTAGG
**
85505 TCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGTCTTACAGATGACCCGAAGG
66 TCTTATGGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGTCTTACAGATGACCCGAAGG
85570 TTTTG
131 TTTTG
* * * * * *
85575 AAAATATCATGCACTGTAGGTCTTATAGATGACCCGAAGGTTTTAAAAATATCATGCACTGTAGG
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCAAAGGTTTTGAAAACATCATGCACTGTAGG
* * * *
85640 TCTTATGGATTACCCAAAAGTTTTGAAAACATCATACACTGAAGGTCTTACAGATG
66 TCTTATGGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGTCTTACAGATG
85696 TGGGAAATAG
Statistics
Matches: 342, Mismatches: 47, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
134 2 0.01
135 190 0.56
137 37 0.11
138 1 0.00
139 38 0.11
140 3 0.01
141 71 0.21
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (135 bp):
AAAACATCCTGCACTGAAGGTCTTATAGATGACCCAAAGGTTTTGAAAACATCATGCACTGTAGG
TCTTATGGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGTCTTACAGATGACCCGAAGG
TTTTG
Found at i:86284 original size:22 final size:22
Alignment explanation
Indices: 86259--86318 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 22
86249 AATAAAGCTT
86259 TCATCTTTGAAAAGAT-AATCTA
1 TCATCTTTGAAAA-ATGAATCTA
*
86281 TCATCTTTGAAGAATGAATCTA
1 TCATCTTTGAAAAATGAATCTA
*
86303 TCATCTTTGAAGAATG
1 TCATCTTTGAAAAATG
86319 TAGATGTAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 2 0.06
22 34 0.94
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (22 bp):
TCATCTTTGAAAAATGAATCTA
Found at i:88217 original size:22 final size:22
Alignment explanation
Indices: 88192--88251 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 22
88182 AATAAAGCTT
88192 TCATCTTTGAAAAGAT-AATCTA
1 TCATCTTTGAAAA-ATGAATCTA
*
88214 TCATCTTTGAAGAATGAATCTA
1 TCATCTTTGAAAAATGAATCTA
*
88236 TCATCTTTGAAGAATG
1 TCATCTTTGAAAAATG
88252 TAGATGTAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 2 0.06
22 34 0.94
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (22 bp):
TCATCTTTGAAAAATGAATCTA
Found at i:91336 original size:20 final size:20
Alignment explanation
Indices: 91313--91373 Score: 65
Period size: 18 Copynumber: 3.2 Consensus size: 20
91303 TTGATTCAAT
91313 TTTTTTCTTCTTTCATTTTC
1 TTTTTTCTTCTTTCATTTTC
* *
91333 TTTTTTTTTCTTTC-TTCTC
1 TTTTTTCTTCTTTCATTTTC
* *
91352 -TTTTTCATCTCT-ATTTTC
1 TTTTTTCTTCTTTCATTTTC
91370 TTTT
1 TTTT
91374 CTGATGAATG
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
18 13 0.39
19 7 0.21
20 13 0.39
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTTTCTTCTTTCATTTTC
Found at i:91347 original size:24 final size:24
Alignment explanation
Indices: 91312--91357 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
91302 CTTGATTCAA
91312 TTTTTTTCTTCTT-TCATTTTCTT
1 TTTTTTTCTTCTTCTCATTTTCTT
*
91335 TTTTTTTCTTTCTTCTCTTTTTC
1 TTTTTTTC-TTCTTCTCATTTTC
91358 ATCTCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 7 0.35
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTTTCTTCTTCTCATTTTCTT
Found at i:93804 original size:14 final size:14
Alignment explanation
Indices: 93785--93917 Score: 57
Period size: 14 Copynumber: 9.4 Consensus size: 14
93775 AATGTAATTG
* *
93785 TGCAAAGATGTAAA
1 TGCAAAAATGAAAA
93799 TGCAAAAATGAAAA
1 TGCAAAAATGAAAA
* *
93813 TG--TAAATAAAAA
1 TGCAAAAATGAAAA
* *
93825 CGTAAAAATGCAAAGA
1 TGCAAAAATG-AAA-A
**
93841 T--ACGAATGCAAAA
1 TGCAAAAATG-AAAA
93854 TG--AAAATGCAAAGA
1 TGCAAAAATG-AAA-A
93868 TGC-AAAATGAAAA
1 TGCAAAAATGAAAA
93881 TGCAAAAAATGTAGAAA
1 TGC-AAAAATG-A-AAA
93898 TGCAAAAAT-AAGAA
1 TGCAAAAATGAA-AA
93912 TGCAAA
1 TGCAAA
93918 TTGCGCAATG
Statistics
Matches: 95, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
12 9 0.09
13 15 0.16
14 42 0.44
15 15 0.16
16 8 0.08
17 6 0.06
ACGTcount: A:0.59, C:0.08, G:0.17, T:0.17
Consensus pattern (14 bp):
TGCAAAAATGAAAA
Found at i:93863 original size:13 final size:14
Alignment explanation
Indices: 93845--93887 Score: 63
Period size: 13 Copynumber: 3.1 Consensus size: 14
93835 CAAAGATACG
93845 AATGCAAAATG-AA
1 AATGCAAAATGCAA
93858 AATGCAAAGATGCAA
1 AATGCAAA-ATGCAA
93873 AATG-AAAATGCAA
1 AATGCAAAATGCAA
93886 AA
1 AA
93888 AATGTAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 16 0.57
14 6 0.21
15 6 0.21
ACGTcount: A:0.60, C:0.09, G:0.16, T:0.14
Consensus pattern (14 bp):
AATGCAAAATGCAA
Found at i:93870 original size:21 final size:21
Alignment explanation
Indices: 93846--93886 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
93836 AAAGATACGA
93846 ATGCAAAATGAAAATGCAAAG
1 ATGCAAAATGAAAATGCAAAG
93867 ATGCAAAATGAAAATGCAAA
1 ATGCAAAATGAAAATGCAAA
93887 AAATGTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.59, C:0.10, G:0.17, T:0.15
Consensus pattern (21 bp):
ATGCAAAATGAAAATGCAAAG
Found at i:93880 original size:27 final size:28
Alignment explanation
Indices: 93829--93887 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
93819 TAAAAACGTA
*
93829 AAAATGCAAAGATACGAATGCAAAATG-
1 AAAATGCAAAGATACAAATGCAAAATGC
*
93856 AAAATGCAAAGATGCAAAATG-AAAATGC
1 AAAATGCAAAGATAC-AAATGCAAAATGC
93884 AAAA
1 AAAA
93888 AATGTAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 20 0.71
28 8 0.29
ACGTcount: A:0.59, C:0.10, G:0.17, T:0.14
Consensus pattern (28 bp):
AAAATGCAAAGATACAAATGCAAAATGC
Found at i:93889 original size:15 final size:15
Alignment explanation
Indices: 93871--93917 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
93861 GCAAAGATGC
93871 AAAATGAAAATGCAA
1 AAAATGAAAATGCAA
93886 AAAATGTAGAAATGC-A
1 AAAATG-A-AAATGCAA
93902 AAAAT-AAGAATGCAA
1 AAAATGAA-AATGCAA
93917 A
1 A
93918 TTGCGCAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 1 0.04
14 6 0.21
15 8 0.29
16 7 0.25
17 6 0.21
ACGTcount: A:0.64, C:0.06, G:0.15, T:0.15
Consensus pattern (15 bp):
AAAATGAAAATGCAA
Found at i:93906 original size:8 final size:7
Alignment explanation
Indices: 93845--93887 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
93835 CAAAGATACG
93845 AATGCAA
1 AATGCAA
93852 AATG-AA
1 AATGCAA
93858 AATGCAA
1 AATGCAA
93865 AGATGCAA
1 A-ATGCAA
93873 AATG-AA
1 AATGCAA
93879 AATGCAA
1 AATGCAA
93886 AA
1 AA
93888 AATGTAGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 12 0.36
7 14 0.42
8 7 0.21
ACGTcount: A:0.60, C:0.09, G:0.16, T:0.14
Consensus pattern (7 bp):
AATGCAA
Found at i:97711 original size:3 final size:3
Alignment explanation
Indices: 97703--97742 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
97693 AATATAAATT
* *
97703 TAA TAA TAA TAA TAA TAA TAC TAA TAAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
97743 ATGGGCAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:98130 original size:12 final size:12
Alignment explanation
Indices: 98115--98139 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98105 AATATCATGC
98115 TTTATATATATA
1 TTTATATATATA
98127 TTTATATATATA
1 TTTATATATATA
98139 T
1 T
98140 ATGTGTGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTATATATATA
Found at i:100328 original size:18 final size:19
Alignment explanation
Indices: 100305--100353 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
100295 TTAAATTTAA
100305 CATCGAATGC-CTT-TCATG
1 CATCG-ATGCACTTATCATG
100323 CATCGATGCACTTATCATG
1 CATCGATGCACTTATCATG
*
100342 CACCGATGCACT
1 CATCGATGCACT
100354 GAGGATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 4 0.14
18 8 0.29
19 16 0.57
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (19 bp):
CATCGATGCACTTATCATG
Found at i:100374 original size:65 final size:64
Alignment explanation
Indices: 100303--100482 Score: 190
Period size: 65 Copynumber: 2.8 Consensus size: 64
100293 AATTAAATTT
* *
100303 AACATCGAATGCCTTTCATGCATCGATGCACTTATCATGCACCGATGCACTGAGGAT-TTTATGA
1 AACATCGAATGCCTTTGATGCATCGATGCACTTATCATGCACCGATGCACTCAGGATATTT-TG-
100367 A
64 A
* * * * * * *
100368 AACATCGAATGCATTTGATGCATCGATGCAC-CAGCCATTCATCGATGCACTCTGGCTATTTTGA
1 AACATCGAATGCCTTTGATGCATCGATGCACTTA-TCATGCACCGATGCACTCAGGATATTTTGA
100432 AACATCGAATGCAC-TTGATGCATCGATGCACTCT-T-AGTGCACCGATGCACT
1 AACATCGAATGC-CTTTGATGCATCGATGCACT-TATCA-TGCACCGATGCACT
100483 AAGGGTCCAA
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
63 1 0.01
64 43 0.45
65 48 0.51
66 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (64 bp):
AACATCGAATGCCTTTGATGCATCGATGCACTTATCATGCACCGATGCACTCAGGATATTTTGA
Found at i:100462 original size:17 final size:19
Alignment explanation
Indices: 100434--100482 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
100424 TATTTTGAAA
100434 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
100452 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
100471 CACCGATGCACT
1 CATCGATGCACT
100483 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:109048 original size:65 final size:64
Alignment explanation
Indices: 108958--109112 Score: 170
Period size: 65 Copynumber: 2.4 Consensus size: 64
108948 AATTAAATTG
* * * *
108958 AACATCGACTGCATTTCATGCATCGATACACTTA-CCATGCACCGATGCACTGAGGAT-TTTATG
1 AACATCGAATGCATTTGATGCATCGATACAC-CAGCCATGCACCGATGCACTCAGGATATTT-TG
109021 AA
64 -A
* * * * * *
109023 AACATCAAATGCATTTGATGTATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGA
1 AACATCGAATGCATTTGATGCATCGATACACCAGCCATGCACCGATGCACTCAGGATATTTTGA
*
109087 AACATCGAATGCACTTGATGCATCGA
1 AACATCGAATGCATTTGATGCATCGA
109113 CGCACTCTTA
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
64 25 0.33
65 47 0.63
66 3 0.04
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (64 bp):
AACATCGAATGCATTTGATGCATCGATACACCAGCCATGCACCGATGCACTCAGGATATTTTGA
Found at i:121242 original size:22 final size:22
Alignment explanation
Indices: 121199--121242 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
121189 ATATGATATT
* *
121199 TTTTAGCTCTTAAATTTAATTA
1 TTTTAACTCTTAAATCTAATTA
*
121221 TTTTAACTCTTAAATCTCATTA
1 TTTTAACTCTTAAATCTAATTA
121243 AATTTTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.14, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTTAACTCTTAAATCTAATTA
Found at i:129528 original size:2 final size:2
Alignment explanation
Indices: 129521--129554 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
129511 AGTTCGAACA
129521 AT AT AT AT -T AT A- AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
129555 TTTTGAACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130951 original size:3 final size:3
Alignment explanation
Indices: 130943--131010 Score: 102
Period size: 3 Copynumber: 22.7 Consensus size: 3
130933 TTTATCCATT
* *
130943 TTA TTA TTA TTA TTA TTA TTA TTA GTA TTTA TTA TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
130989 TTA -TA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
131011 TAATAAATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.03
3 55 0.93
4 2 0.03
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:131728 original size:13 final size:13
Alignment explanation
Indices: 131710--131738 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
131700 ACCACCGTTA
131710 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
131723 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
131736 CGG
1 CGG
131739 AGTACGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.62, T:0.07
Consensus pattern (13 bp):
CGGTGGCCGGCGG
Found at i:132305 original size:17 final size:18
Alignment explanation
Indices: 132283--132316 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
132273 CAATTTAGTC
132283 ATTTATTTTA-TGTTTTA
1 ATTTATTTTATTGTTTTA
132300 ATTTATTTTATTGTTTT
1 ATTTATTTTATTGTTTT
132317 TAAATATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
ATTTATTTTATTGTTTTA
Found at i:132391 original size:16 final size:15
Alignment explanation
Indices: 132370--132402 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
132360 AAATATTTTG
*
132370 ATATATAT-TCATAA
1 ATATATATATAATAA
132384 ATATATATATAATAA
1 ATATATATATAATAA
132399 ATAT
1 ATAT
132403 TAACTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATATATATAATAA
Found at i:139518 original size:13 final size:13
Alignment explanation
Indices: 139500--139528 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
139490 ACCACCGTTA
139500 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
139513 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
139526 CGG
1 CGG
139529 AGTACGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.62, T:0.07
Consensus pattern (13 bp):
CGGTGGCCGGCGG
Found at i:140118 original size:19 final size:19
Alignment explanation
Indices: 140080--140115 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
140070 CAATTTAGTC
140080 ATTTATTTTATATGTTTTA
1 ATTTATTTTATATGTTTTA
140099 ATTTATTTTAT-TGTTTT
1 ATTTATTTTATATGTTTT
140116 TAAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (19 bp):
ATTTATTTTATATGTTTTA
Found at i:140190 original size:16 final size:15
Alignment explanation
Indices: 140169--140201 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
140159 AAATATTTTG
*
140169 ATATATAT-TCATAA
1 ATATATATATAATAA
140183 ATATATATATAATAA
1 ATATATATATAATAA
140198 ATAT
1 ATAT
140202 TAACTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATATATATAATAA
Found at i:151512 original size:6 final size:6
Alignment explanation
Indices: 151494--151570 Score: 70
Period size: 6 Copynumber: 12.3 Consensus size: 6
151484 ATTATGCTTG
*
151494 AAGAAA AAAAAA AAG-AA AAG-AA AAGAAA AAGAAGAGA AAGAAA AA-AAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAG-A-A-A AAGAAA AAGAAA
151542 AAGGAAAA GAAGAAA AAGAAA AAGAAA AA
1 AA-G-AAA -AAGAAA AAGAAA AAGAAA AA
151571 AAGGGGTCAA
Statistics
Matches: 61, Mismatches: 2, Indels: 16
0.77 0.03 0.20
Matches are distributed among these distances:
5 15 0.25
6 29 0.48
7 5 0.08
8 6 0.10
9 6 0.10
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:151549 original size:26 final size:26
Alignment explanation
Indices: 151503--151570 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 26
151493 GAAGAAAAAA
*
151503 AAAAAG-AAAAGAAAAGAAAAAGAAG
1 AAAAAGAAAAAAAAAAGAAAAAGAAG
* *
151528 AGAAAGAAAAAAAAAAGGAAAAGAAG
1 AAAAAGAAAAAAAAAAGAAAAAGAAG
151554 AAAAAGAAAAAGAAAAA
1 AAAAAGAAAAA-AAAAA
151571 AAGGGGTCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 5 0.14
26 27 0.73
27 5 0.14
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (26 bp):
AAAAAGAAAAAAAAAAGAAAAAGAAG
Found at i:151549 original size:32 final size:33
Alignment explanation
Indices: 151495--151573 Score: 108
Period size: 32 Copynumber: 2.4 Consensus size: 33
151485 TTATGCTTGA
*
151495 AGAAAAAAAAAAAGAAAAGAAAAGAA-AAAGAAG
1 AGAAAGAAAAAAAGAAAAGAAAAGAAGAAA-AAG
*
151528 AGAAAGAAAAAAA-AAAGGAAAAGAAGAAAAAG
1 AGAAAGAAAAAAAGAAAAGAAAAGAAGAAAAAG
*
151560 AAAAAGAAAAAAAG
1 AGAAAGAAAAAAAG
151574 GGGTCAAGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
32 26 0.63
33 15 0.37
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (33 bp):
AGAAAGAAAAAAAGAAAAGAAAAGAAGAAAAAG
Found at i:152822 original size:102 final size:102
Alignment explanation
Indices: 152687--153081 Score: 722
Period size: 102 Copynumber: 3.9 Consensus size: 102
152677 GACTCAATAA
152687 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGA-AGAACATAGCATCTTCTGGAAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAGAACATAGCATCTTCTGGAAG
*
152751 TGTTCTTTGAGTTATCTGATCTGTTTAGAAGAACATAG
66 TGTTCTTTGAGTTATCTGATCTGGTT-GAAGAACATAG
152789 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGA-AGAACATAGCATCTTCTGGAAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAGAACATAGCATCTTCTGGAAG
152853 TGTTCTTTGAGTTATCTGATCTGGTTGAAGAACATAG
66 TGTTCTTTGAGTTATCTGATCTGGTTGAAGAACATAG
152890 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAGAACATAGCATCTTCTGGAAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAGAACATAGCATCTTCTGGAAG
*
152955 TGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACATAA
66 TGTTCTTTGAGTTATCTGATCTGGTT-GA-AGAACATAG
*
152994 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACATAGCATCTTCTGGAAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAGAACATAGCATCTTCTGGAAG
153059 TGTTCTTTGAGTTATCTGATCTG
66 TGTTCTTTGAGTTATCTGATCTG
153082 ATTGGACAGA
Statistics
Matches: 287, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
101 53 0.18
102 137 0.48
103 2 0.01
104 95 0.33
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (102 bp):
CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAGAACATAGCATCTTCTGGAAG
TGTTCTTTGAGTTATCTGATCTGGTTGAAGAACATAG
Found at i:153100 original size:52 final size:51
Alignment explanation
Indices: 152687--153081 Score: 720
Period size: 52 Copynumber: 7.7 Consensus size: 51
152677 GACTCAATAA
152687 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAAGAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAAGAACATAG
*
152738 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGTTTAGAAGAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAAGAACATAG
152789 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAAGAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAAGAACATAG
152840 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-GAAGAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAAGAACATAG
152890 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAGAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGA-AGAACATAG
* *
152942 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACATAA
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGA-AGAACATAG
*
152994 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGA-AGAACATAG
153046 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
153082 ATTGGACAGA
Statistics
Matches: 337, Mismatches: 5, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
50 50 0.15
51 141 0.42
52 146 0.43
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (51 bp):
CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAAGAACATAG
Found at i:153923 original size:113 final size:113
Alignment explanation
Indices: 153716--154842 Score: 1945
Period size: 113 Copynumber: 10.0 Consensus size: 113
153706 TTTAGCAAAG
153716 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
*
153781 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
*** * * *
153829 GTTTAAATTCATCATTTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
153894 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
* * *
153942 ACCTGAATCCATCATTTGGTGGATCATCATTACCAGAGAAGGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
154007 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
* * *
154055 ACCTGAATCCATCATTTGGTGGATCATCATTACCAGAGAAGGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
154120 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
154168 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
154233 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
154281 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
154346 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC-ACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
* * *
154393 ACCTGAATCCATCATTTGGTGGATCATCATTACCAGAGAAGGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
154458 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
154506 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAG-AAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
154570 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
154618 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
* *
154683 AAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTT
66 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
*** * * * * * ** *
154730 GTTTAAATTCATCATTTGATGGATCAACATGGCCAAAGAAAGTTCATGAATGAGAAGAACTCATC
1 ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCAT-AATGAGAAGAACTCATC
**
154795 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTT
65 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTT
154843 GTTTGATATC
Statistics
Matches: 970, Mismatches: 40, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
112 261 0.27
113 705 0.73
114 4 0.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (113 bp):
ACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
Found at i:155147 original size:3 final size:3
Alignment explanation
Indices: 155139--155208 Score: 104
Period size: 3 Copynumber: 22.7 Consensus size: 3
155129 TTTATCCATT
* *
155139 TTA TTA TTA TTA TTA TTA TTA TTA GTA TTTA TTA TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
155185 TTA TATA TTA TTA TTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TTA TT
155209 TAATAAATAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
3 56 0.92
4 5 0.08
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:155169 original size:28 final size:26
Alignment explanation
Indices: 155138--155208 Score: 108
Period size: 28 Copynumber: 2.7 Consensus size: 26
155128 TTTTATCCAT
155138 TTTATTATTATTATTATTATTATTAGTA
1 TTTATTATTATTATTATTATTA-TA-TA
*
155166 TTTATTATTATTATTAATATTATATA
1 TTTATTATTATTATTATTATTATATA
155192 -TTATTATTATTATTATT
1 TTTATTATTATTATTATT
155209 TAATAAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
25 16 0.39
26 2 0.05
27 2 0.05
28 21 0.51
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (26 bp):
TTTATTATTATTATTATTATTATATA
Found at i:155170 original size:22 final size:22
Alignment explanation
Indices: 155145--155206 Score: 97
Period size: 22 Copynumber: 2.8 Consensus size: 22
155135 CATTTTATTA
155145 TTATTATTATTATTATTAGTAT
1 TTATTATTATTATTATTAGTAT
* *
155167 TTATTATTATTATTAATATTAT
1 TTATTATTATTATTATTAGTAT
*
155189 ATATTATTATTATTATTA
1 TTATTATTATTATTATTA
155207 TTTAATAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TTATTATTATTATTATTAGTAT
Found at i:155935 original size:13 final size:13
Alignment explanation
Indices: 155917--155945 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
155907 ACCACCGTTA
155917 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
155930 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
155943 CGG
1 CGG
155946 AGTACGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.62, T:0.07
Consensus pattern (13 bp):
CGGTGGCCGGCGG
Found at i:156536 original size:19 final size:19
Alignment explanation
Indices: 156498--156533 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
156488 CAATTTAGTC
156498 ATTTATTTTATATGTTTTA
1 ATTTATTTTATATGTTTTA
156517 ATTTATTTTAT-TGTTTT
1 ATTTATTTTATATGTTTT
156534 TAAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (19 bp):
ATTTATTTTATATGTTTTA
Found at i:160034 original size:19 final size:20
Alignment explanation
Indices: 160010--160052 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
160000 AGAAGTCAAA
160010 TTCGCAAAGCG-AGTTTATT
1 TTCGCAAAGCGAAGTTTATT
* *
160029 TTCGCAACGCGAATTTTATT
1 TTCGCAAAGCGAAGTTTATT
160049 TTCG
1 TTCG
160053 AATTCGAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (20 bp):
TTCGCAAAGCGAAGTTTATT
Found at i:160561 original size:20 final size:20
Alignment explanation
Indices: 160538--160576 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
160528 TTTGAAACTT
160538 AAATTCGCAACACGAAAATG
1 AAATTCGCAACACGAAAATG
160558 AAATTCGCAACACGAAAAT
1 AAATTCGCAACACGAAAAT
160577 CGCAACGCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.21, G:0.13, T:0.15
Consensus pattern (20 bp):
AAATTCGCAACACGAAAATG
Found at i:160579 original size:14 final size:14
Alignment explanation
Indices: 160557--160590 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
160547 ACACGAAAAT
*
160557 GAAATTCGCAACAC
1 GAAAATCGCAACAC
*
160571 GAAAATCGCAACGC
1 GAAAATCGCAACAC
160585 GAAAAT
1 GAAAAT
160591 GAAAATCGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.12
Consensus pattern (14 bp):
GAAAATCGCAACAC
Found at i:160588 original size:34 final size:34
Alignment explanation
Indices: 160542--160606 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
160532 AAACTTAAAT
*
160542 TCGCAACACGAAAATGAAATTCGCAACACGAAAA
1 TCGCAACACGAAAATGAAAATCGCAACACGAAAA
*
160576 TCGCAACGCGAAAATGAAAATCGCAACACGA
1 TCGCAACACGAAAATGAAAATCGCAACACGA
160607 TTTTAGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.48, C:0.25, G:0.17, T:0.11
Consensus pattern (34 bp):
TCGCAACACGAAAATGAAAATCGCAACACGAAAA
Found at i:160636 original size:20 final size:20
Alignment explanation
Indices: 160607--160656 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
160597 CGCAACACGA
*
160607 TTTTAGTTTCGCTTTGCGAT
1 TTTTAGTTTCGCGTTGCGAT
*
160627 TTTTATTTTCGCGTTGCGAT
1 TTTTAGTTTCGCGTTGCGAT
*
160647 TTTAAGTTTC
1 TTTTAGTTTC
160657 AGAAACTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.12, C:0.14, G:0.18, T:0.56
Consensus pattern (20 bp):
TTTTAGTTTCGCGTTGCGAT
Found at i:162066 original size:42 final size:42
Alignment explanation
Indices: 161978--162074 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
161968 CCCCACTTCG
* * * ** * * *
161978 AGAGTCATCACCTGATCGAGCCGATTCTACTGCTCGACACCC
1 AGAGCCATCACCTGATCGAGCCAATTATACACCTCCACAACA
*
162020 AGAGCCATCACCTGATCGAGTCAATTATACACCTCCACAACA
1 AGAGCCATCACCTGATCGAGCCAATTATACACCTCCACAACA
162062 AGAGCCATCACCT
1 AGAGCCATCACCT
162075 ATTCCATCAC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.20
Consensus pattern (42 bp):
AGAGCCATCACCTGATCGAGCCAATTATACACCTCCACAACA
Found at i:162232 original size:21 final size:21
Alignment explanation
Indices: 162192--162232 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
162182 AGTTGAGTTA
* * *
162192 CGTGATGAGGTCAGTGCTTTG
1 CGTGATGAAGTCAATACTTTG
162213 CGTGATGAAGTCAATACTTT
1 CGTGATGAAGTCAATACTTT
162233 ACGTCACGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (21 bp):
CGTGATGAAGTCAATACTTTG
Found at i:162470 original size:4 final size:4
Alignment explanation
Indices: 162461--162498 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
162451 TTTTTCGACA
162461 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
162499 TTAGTGGCCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:162670 original size:21 final size:21
Alignment explanation
Indices: 162642--162738 Score: 133
Period size: 21 Copynumber: 4.6 Consensus size: 21
162632 GATTCACCTG
162642 TCATCGTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
162663 -CTATCGTTCAAGAGGCCCCTC
1 TC-ATCGTTCAAGAGGCCCCTC
*
162684 TCATCATTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
* * * *
162705 CCACCGTTCAAGAGACCCCTG
1 TCATCGTTCAAGAGGCCCCTC
162726 TCATCGTTCAAGA
1 TCATCGTTCAAGA
162739 ATCCCTCCCA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
20 1 0.02
21 64 0.97
22 1 0.02
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:162701 original size:42 final size:42
Alignment explanation
Indices: 162642--162759 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
162632 GATTCACCTG
* * *
162642 TCATCGTTCAAGAGGCCCCTCCTATCGTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGACCCCTC
* *
162684 TCATCATTCAAGAGGCCCCTCCCACCGTTCAAGAGACCCCTG
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGACCCCTC
**
162726 TCATCGTTCAAGA-ATCCCTCCCACCGTTCAAGAG
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAG
162760 TCAGATTCAC
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
41 19 0.28
42 49 0.72
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.22
Consensus pattern (42 bp):
TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGACCCCTC
Found at i:162753 original size:20 final size:21
Alignment explanation
Indices: 162646--162759 Score: 113
Period size: 21 Copynumber: 5.5 Consensus size: 21
162636 CACCTGTCAT
* * *
162646 CGTTCAAGAGGCCCCTCCTAT
1 CGTTCAAGAGACCCCTCCCAC
* * *
162667 CGTTCAAGAGGCCCCTCTCAT
1 CGTTCAAGAGACCCCTCCCAC
* *
162688 CATTCAAGAGGCCCCTCCCAC
1 CGTTCAAGAGACCCCTCCCAC
** *
162709 CGTTCAAGAGACCCCTGTCAT
1 CGTTCAAGAGACCCCTCCCAC
*
162730 CGTTCAAGA-ATCCCTCCCAC
1 CGTTCAAGAGACCCCTCCCAC
162750 CGTTCAAGAG
1 CGTTCAAGAG
162760 TCAGATTCAC
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
20 16 0.21
21 62 0.79
ACGTcount: A:0.23, C:0.39, G:0.18, T:0.21
Consensus pattern (21 bp):
CGTTCAAGAGACCCCTCCCAC
Found at i:164406 original size:20 final size:20
Alignment explanation
Indices: 164353--164408 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
164343 CAATCGCAAC
*
164353 GCGAATTTGACTTCCGTATT
1 GCGAATTTGACTTTCGTATT
*
164373 GCGAATTTGACTTTTG-AGTT
1 GCGAATTTGACTTTCGTA-TT
164393 GCGAATTTGACTTTCG
1 GCGAATTTGACTTTCG
164409 CAACAATCGC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 1 0.03
20 31 0.97
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (20 bp):
GCGAATTTGACTTTCGTATT
Found at i:165885 original size:14 final size:14
Alignment explanation
Indices: 165868--165912 Score: 90
Period size: 14 Copynumber: 3.2 Consensus size: 14
165858 TATTGGCAGT
165868 ATCTCATTGTTAGC
1 ATCTCATTGTTAGC
165882 ATCTCATTGTTAGC
1 ATCTCATTGTTAGC
165896 ATCTCATTGTTAGC
1 ATCTCATTGTTAGC
165910 ATC
1 ATC
165913 CATGGCTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (14 bp):
ATCTCATTGTTAGC
Found at i:167097 original size:24 final size:24
Alignment explanation
Indices: 167006--167083 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
166996 CTGAAACATC
* *
167006 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGGGTATTGACCAAG
167030 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGGGTATTGACCAAG
167054 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGGGTATTGACCAAG
167078 ATCAAA
1 ATCAAA
167084 TTTCGAATAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (24 bp):
ATCAAAGTCCGGGTATTGACCAAG
Found at i:167861 original size:16 final size:16
Alignment explanation
Indices: 167840--167870 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
167830 AAATCTTTGA
167840 AAAATTATATAAAAAT
1 AAAATTATATAAAAAT
*
167856 AAAATTATGTAAAAA
1 AAAATTATATAAAAA
167871 AATTAGAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AAAATTATATAAAAAT
Found at i:168039 original size:18 final size:18
Alignment explanation
Indices: 168016--168064 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
168006 ACATTTGTGT
168016 TGCGAAAATAAAACCTGG
1 TGCGAAAATAAAACCTGG
168034 TGCGAAAATAAAACCTGG
1 TGCGAAAATAAAACCTGG
*
168052 TGCGAAATTAAAA
1 TGCGAAAATAAAA
168065 TTCGTGTTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.18
Consensus pattern (18 bp):
TGCGAAAATAAAACCTGG
Found at i:168077 original size:20 final size:20
Alignment explanation
Indices: 168052--168137 Score: 63
Period size: 20 Copynumber: 4.3 Consensus size: 20
168042 TAAAACCTGG
*
168052 TGCGAAATTAAAATTCGTGT
1 TGCGAAATTAAAATTCGAGT
168072 TGCG-AATTCGAAAA-TCGAGT
1 TGCGAAATT--AAAATTCGAGT
* ** *
168092 TGCAAAAACAAAATTCGCGT
1 TGCGAAATTAAAATTCGAGT
168112 TGCG-AATTCAGAAA-TCGAGT
1 TGCGAAATT-A-AAATTCGAGT
168132 TGCGAA
1 TGCGAA
168138 TTTGGAAATC
Statistics
Matches: 50, Mismatches: 9, Indels: 13
0.69 0.12 0.18
Matches are distributed among these distances:
19 10 0.20
20 30 0.60
21 10 0.20
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (20 bp):
TGCGAAATTAAAATTCGAGT
Found at i:168138 original size:20 final size:20
Alignment explanation
Indices: 168070--168159 Score: 85
Period size: 20 Copynumber: 4.5 Consensus size: 20
168060 TAAAATTCGT
168070 GTTGCGAATTC-GAAAATCGA
1 GTTGCGAATTCAG-AAATCGA
* ** *
168090 GTTGCAAAAACA-AAATTCGC
1 GTTGCGAATTCAGAAA-TCGA
168110 GTTGCGAATTCAGAAATCGA
1 GTTGCGAATTCAGAAATCGA
** *
168130 GTTGCGAATTTGGAAATCGC
1 GTTGCGAATTCAGAAATCGA
168150 GTTGCGAATT
1 GTTGCGAATT
168160 TGTTGGTCAT
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
19 3 0.05
20 50 0.89
21 3 0.05
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (20 bp):
GTTGCGAATTCAGAAATCGA
Found at i:170045 original size:19 final size:20
Alignment explanation
Indices: 170008--170047 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
169998 TTTATAATTT
* *
170008 TAATTAGTTAAATATTAATA
1 TAATTAGTTAAAAAATAATA
170028 TAATTA-TTAAAAAATAATA
1 TAATTAGTTAAAAAATAATA
170047 T
1 T
170048 TTATGGGGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (20 bp):
TAATTAGTTAAAAAATAATA
Found at i:172549 original size:39 final size:39
Alignment explanation
Indices: 172495--172578 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
172485 TTTCAACATG
*
172495 AAAAGAAAATGGATTGAATTGCAACTCCTGGGAATTTCA
1 AAAAGAAAATAGATTGAATTGCAACTCCTGGGAATTTCA
* *
172534 AGAAGAAAATAGATTGAATTGCAGCTCCTGGGAATTTCA
1 AAAAGAAAATAGATTGAATTGCAACTCCTGGGAATTTCA
172573 AAAAGA
1 AAAAGA
172579 GCATACATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (39 bp):
AAAAGAAAATAGATTGAATTGCAACTCCTGGGAATTTCA
Found at i:173365 original size:23 final size:23
Alignment explanation
Indices: 173328--173371 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
173318 ATTGGAGTTT
173328 GTAGGTGCCCAAATATAGAAGTG
1 GTAGGTGCCCAAATATAGAAGTG
* *
173351 GTAGGTGTCCGAATATAGAAG
1 GTAGGTGCCCAAATATAGAAG
173372 CGGGAGCTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.11, G:0.32, T:0.23
Consensus pattern (23 bp):
GTAGGTGCCCAAATATAGAAGTG
Found at i:175367 original size:2 final size:2
Alignment explanation
Indices: 175360--175396 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
175350 TATAAATTAA
175360 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
175397 ATTATTAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:176113 original size:24 final size:23
Alignment explanation
Indices: 176042--176111 Score: 70
Period size: 25 Copynumber: 2.9 Consensus size: 23
176032 CTTTTATTGA
176042 TAATATATTTTTATCTCTAAAATT
1 TAATATATTTTTA-CTCTAAAATT
* * *
176066 TTATA-AGTTTATTTCTATTAAAATT
1 TAATATA-TTT-TTACT-CTAAAATT
176091 TAATATATTTTTACTCTAAAA
1 TAATATATTTTTACTCTAAAA
176112 ATAAATTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
23 6 0.17
24 13 0.36
25 16 0.44
26 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.53
Consensus pattern (23 bp):
TAATATATTTTTACTCTAAAATT
Found at i:184746 original size:22 final size:22
Alignment explanation
Indices: 184718--184773 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
184708 CAGAAGGGGG
*
184718 TATCGATACCATAGTATAGTAC
1 TATCGATACCATAGTATAGTAA
184740 TATCGATACCATAGTATAGTAA
1 TATCGATACCATAGTATAGTAA
184762 TATCGATACCAT
1 TATCGATACCAT
184774 GATAAGGGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (22 bp):
TATCGATACCATAGTATAGTAA
Found at i:185271 original size:57 final size:57
Alignment explanation
Indices: 185133--185783 Score: 963
Period size: 57 Copynumber: 11.5 Consensus size: 57
185123 TGCAAAATAC
* *
185133 AAGAAATCATTA-TAAGTGTATGAATTTTAGATAGGACGTTTCGTACGCTAAAAT-TT
1 AAGAAATCA-TACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* * *
185189 AAGAAATCATACTAAGTGTATGAATTTCAGATAAGGCGTTTTGTACGCTAAAATTTT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* *
185246 AAGAAATCATACTAAGTGTATGAATTTCAGATAAGGCG-TT--T-CGCTAAAATTTT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* *
185299 AAGAAATCATACTAAGTGTATGAATTTCATATGGGGCGTTTCGTACGCTAAAATGTT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
*
185356 AAGAAATCATACTAAGTGTATAAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* * * * *
185413 AAGAAATCGTACTAAGTGTATAAATTTCAGATAGTGTGTTTCGTATGCTAAAATGTT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* *
185470 AAGAAATCGTACTAAGTGTATGAATTTCATATAGGGCGTTTCGTACGCTAAAATGTT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* *
185527 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTATGGTAAAATGTT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* ** * * * *
185584 AAGAAGTCATACTAAGTGTACAAATTTCAGATTGGGCATTACGTATGCTAAAATGTT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* **
185641 AAGAAATCATACTAAGCGTATGAATTTCAGATAGGGTATTTCGTACGCTAAAATGTT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* *
185698 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGTGTTTCGTACGCTAAAATGAT
1 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
185755 AAGGAAATCATACTAAGTGTATGAATTTC
1 AA-GAAATCATACTAAGTGTATGAATTTC
185784 CATATAGGAC
Statistics
Matches: 546, Mismatches: 42, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
53 47 0.09
54 3 0.01
55 2 0.00
56 50 0.09
57 418 0.77
58 26 0.05
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (57 bp):
AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
Found at i:186294 original size:68 final size:68
Alignment explanation
Indices: 186185--186314 Score: 206
Period size: 68 Copynumber: 1.9 Consensus size: 68
186175 AAAAGATCAA
* * *
186185 GAGGCCTAACTGTGCATATGACAGAAATGTGTCATTTATGCCAGTTAGATGAAAGATTAAGTGTC
1 GAGGCCTAACTGGGCATATGACAGAAAAGTGTCAATTATGCCAGTTAGATGAAAGATTAAGTGTC
186250 TTT
66 TTT
* * *
186253 GAGGCCTAGCTGGGCATTTGACAGAAAAGTGTCAATTATGCCAGTTAGATGAACGATTAAGT
1 GAGGCCTAACTGGGCATATGACAGAAAAGTGTCAATTATGCCAGTTAGATGAAAGATTAAGT
186315 ACCGTTGAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 56 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (68 bp):
GAGGCCTAACTGGGCATATGACAGAAAAGTGTCAATTATGCCAGTTAGATGAAAGATTAAGTGTC
TTT
Found at i:186534 original size:45 final size:45
Alignment explanation
Indices: 186483--186597 Score: 176
Period size: 45 Copynumber: 2.6 Consensus size: 45
186473 GCATAATTGT
* *
186483 ATGAAAGGATGCCATAAATGAAATGTATAATAGTGTATCAAAGGC
1 ATGAAAGGATGCCATAAATGAAATGTATAATAGTGTATAAAAGAC
*
186528 ATGAAAGGATGCCATAAATGAAAGGTATAATAGTGTATAAAAGAC
1 ATGAAAGGATGCCATAAATGAAATGTATAATAGTGTATAAAAGAC
* * *
186573 ATGTAAGGATGACATAATTGAAATG
1 ATGAAAGGATGCCATAAATGAAATG
186598 CATATAGGTG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.46, C:0.07, G:0.23, T:0.24
Consensus pattern (45 bp):
ATGAAAGGATGCCATAAATGAAATGTATAATAGTGTATAAAAGAC
Found at i:189577 original size:16 final size:19
Alignment explanation
Indices: 189535--189572 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
189525 ATCACGATCG
189535 TAATT-TTTTTTAAAGAAA
1 TAATTCTTTTTTAAAGAAA
*
189553 TAATTCTTTTTTAAAAAAA
1 TAATTCTTTTTTAAAGAAA
189572 T
1 T
189573 TCTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (19 bp):
TAATTCTTTTTTAAAGAAA
Found at i:190764 original size:2 final size:2
Alignment explanation
Indices: 190757--190784 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
190747 AAATAATTTA
190757 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
190785 TGAAGGTGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:190767 original size:22 final size:21
Alignment explanation
Indices: 190710--190767 Score: 54
Period size: 22 Copynumber: 2.9 Consensus size: 21
190700 TTTACTATTT
190710 ATAATTTATATATATATATAAA
1 ATAATTTA-ATATATATATAAA
*
190732 ATAA---AAT-T-TGTATACAA
1 ATAATTTAATATATATATA-AA
190749 ATAATTTAATATATATATA
1 ATAATTTAATATATATATA
190768 TATATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
16 5 0.18
17 7 0.25
18 2 0.07
19 1 0.04
20 3 0.11
21 1 0.04
22 9 0.32
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
ATAATTTAATATATATATAAA
Found at i:196083 original size:21 final size:21
Alignment explanation
Indices: 196054--196106 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
196044 ATTCTGACTA
196054 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
196075 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
196096 TCGCAATGCGA
1 TCGCATTGCGA
196107 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:196121 original size:20 final size:20
Alignment explanation
Indices: 196096--196230 Score: 173
Period size: 20 Copynumber: 6.7 Consensus size: 20
196086 TTTTCCTAAT
196096 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
196116 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
196136 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
196157 TCGCAATAC-AATTACGTAAA
1 TCGCAATGCGAA-TACGTAAA
* *
196177 TCGCAATGCGAATTAAGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
196198 TCGCAATGCAAATACGTAAA
1 TCGCAATGCGAATACGTAAA
196218 TCGCAATGCGAAT
1 TCGCAATGCGAAT
196231 CTGACTATCG
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
20 65 0.66
21 34 0.34
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:196126 original size:41 final size:41
Alignment explanation
Indices: 196096--196230 Score: 200
Period size: 41 Copynumber: 3.3 Consensus size: 41
196086 TTTTCCTAAT
* *
196096 TCGCAATGCGAA-TACGTAAATCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATTAAGAAAATCGCAATGCGATTACGTAAA
* * *
196136 TCGCAATGCGAATTAGGAAAATCGCAATACAATTACGTAAA
1 TCGCAATGCGAATTAAGAAAATCGCAATGCGATTACGTAAA
* *
196177 TCGCAATGCGAATTAAGAAAATCGCAATGCAAATACGTAAA
1 TCGCAATGCGAATTAAGAAAATCGCAATGCGATTACGTAAA
196218 TCGCAATGCGAAT
1 TCGCAATGCGAAT
196231 CTGACTATCG
Statistics
Matches: 87, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 12 0.14
41 75 0.86
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (41 bp):
TCGCAATGCGAATTAAGAAAATCGCAATGCGATTACGTAAA
Found at i:196173 original size:61 final size:61
Alignment explanation
Indices: 196108--196224 Score: 173
Period size: 61 Copynumber: 1.9 Consensus size: 61
196098 GCAATGCGAA
* * * *
196108 TACGTAAATCGCAATGCG-ATTACGTAAATCGCAATGCGAATTAGGAAAATCGCAATACAAT
1 TACGTAAATCGCAATGCGAATTAAGAAAATCGCAATGC-AAATACGAAAATCGCAATACAAT
*
196169 TACGTAAATCGCAATGCGAATTAAGAAAATCGCAATGCAAATACGTAAATCGCAAT
1 TACGTAAATCGCAATGCGAATTAAGAAAATCGCAATGCAAATACGAAAATCGCAAT
196225 GCGAATCTGA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
61 33 0.66
62 17 0.34
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (61 bp):
TACGTAAATCGCAATGCGAATTAAGAAAATCGCAATGCAAATACGAAAATCGCAATACAAT
Found at i:196842 original size:19 final size:20
Alignment explanation
Indices: 196783--196853 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 20
196773 TTCTAAACTT
**
196783 AAAATCGCAACATGAAAATG
1 AAAATCGCAACGCGAAAATG
*
196803 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCGAAAATG
* *
196823 ACAATCGCAACGC-TAAATG
1 AAAATCGCAACGCGAAAATG
196842 AAAATCGCAACG
1 AAAATCGCAACG
196854 ATATAATCGC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 16 0.35
20 30 0.65
ACGTcount: A:0.51, C:0.21, G:0.15, T:0.13
Consensus pattern (20 bp):
AAAATCGCAACGCGAAAATG
Found at i:196949 original size:20 final size:19
Alignment explanation
Indices: 196879--196972 Score: 90
Period size: 20 Copynumber: 5.1 Consensus size: 19
196869 GAAACCAAAA
*
196879 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
196898 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
196912 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
196931 TCAGCGTTGCGATTTTCATT
1 TC-GCGTTGCGATTTTCATT
*
196951 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
196971 TC
1 TC
196973 AACCAAAAGA
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
14 10 0.16
16 2 0.03
17 3 0.05
19 14 0.23
20 30 0.49
21 2 0.03
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Done.