Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000520.1 Hibiscus syriacus cultivar Beakdansim tig00000991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1956684
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 11
Found at i:1213273 original size:2 final size:2
Alignment explanation
Indices: 1213268--1213292 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1213258 TTTTATTTAT
1213268 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1213293 TATTCGTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1213400 original size:27 final size:27
Alignment explanation
Indices: 1213309--1213395 Score: 72
Period size: 25 Copynumber: 3.1 Consensus size: 27
1213299 TACTTTGTTA
* *
1213309 TTATTATTTTGTTTATTTGTTTTATTTATT
1 TTATTA-TTTGTTT-TTT-TTATATATATT
* *
1213339 TTCTT-TTT-CTTTTTTTATATATATT
1 TTATTATTTGTTTTTTTTATATATATT
1213364 TTATTATTTGTTTTTTTTACT-TACTATT
1 TTATTATTTGTTTTTTTTA-TATA-TATT
1213392 TTAT
1 TTAT
1213396 CTTTGCTTTC
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
25 13 0.28
26 6 0.13
27 12 0.26
28 12 0.26
30 4 0.09
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (27 bp):
TTATTATTTGTTTTTTTTATATATATT
Found at i:1215969 original size:270 final size:273
Alignment explanation
Indices: 1215485--1216033 Score: 980
Period size: 270 Copynumber: 2.0 Consensus size: 273
1215475 ATTATCTATA
1215485 TCAGAGTTTGTGTATCACGGTGACAGTTATAAGAAGAAGATCAAAGAGATAGCCGAGTCATGGAA
1 TCAGAGTTTGTGTATCACGGTGACAGTTATAAGAAGAAGATCAAAGAGATAGCCGAGTCATGGAA
* *
1215550 GAAAGTATCCTGGATAGATGTTGTGGCTGCTAGAGATATTCTCACTCTGGATTATGTGGAATGAC
66 GAAAGTATCCTGGATAGATGTTGTGGCTGCTAGAGATATGCTCACTCCGGATTATGTGGAATGAC
* * *
1215615 TAAGATTGAGAAAGAATGATAACATCCCGGTGCCAAACTGTGAGGACACACTGACCATGAAGGAG
131 GAAGATTGAGAAAGAATGATAACATCCCGGTGCCAAACTGTGAGGACACACGGACCATGAAAGAG
* *
1215680 CATCTCAGGCATGTCCCTTCTAAACTTGAGATAACTAAGGCGGGGTTTTG-AGCTGTAAAAATGA
196 CATCTCAAGCATATCCCTTCTAAACTTGAGATAACTAAGGCGGGG-TTTGAAGCTGTAAAAATGA
1215744 GTT-AAGCAGAAGG
260 GTTAAAGCAGAAGG
*
1215757 TCAGAGTTTGTGTATCACTGTGACAGTTATAAGAAGAAGATC-AA-AGATAGCCGAGTCATGGAA
1 TCAGAGTTTGTGTATCACGGTGACAGTTATAAGAAGAAGATCAAAGAGATAGCCGAGTCATGGAA
1215820 GAAAGTATCCTGGATAGATGTTGTGGCTGCTAGAGATATGCTCACTCCGGATTATGTGGAATGAC
66 GAAAGTATCCTGGATAGATGTTGTGGCTGCTAGAGATATGCTCACTCCGGATTATGTGGAATGAC
*
1215885 GAAGATTGAGAAAGAATGATAACATCCCGGTGCCAGACTGTGAGGACACACGGACCATGAAAGAG
131 GAAGATTGAGAAAGAATGATAACATCCCGGTGCCAAACTGTGAGGACACACGGACCATGAAAGAG
1215950 CATCTCAAGCATATCCCTTCTAAACTTGAGATAACTAAGGCGGGGTTTGAAGCTGTAAAAATGAG
196 CATCTCAAGCATATCCCTTCTAAACTTGAGATAACTAAGGCGGGGTTTGAAGCTGTAAAAATGAG
1216015 TTAAAGCAGAAGG
261 TTAAAGCAGAAGG
1216028 TCAGAG
1 TCAGAG
1216034 AACTTGAAAC
Statistics
Matches: 266, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
269 4 0.02
270 203 0.76
271 18 0.07
272 41 0.15
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.24
Consensus pattern (273 bp):
TCAGAGTTTGTGTATCACGGTGACAGTTATAAGAAGAAGATCAAAGAGATAGCCGAGTCATGGAA
GAAAGTATCCTGGATAGATGTTGTGGCTGCTAGAGATATGCTCACTCCGGATTATGTGGAATGAC
GAAGATTGAGAAAGAATGATAACATCCCGGTGCCAAACTGTGAGGACACACGGACCATGAAAGAG
CATCTCAAGCATATCCCTTCTAAACTTGAGATAACTAAGGCGGGGTTTGAAGCTGTAAAAATGAG
TTAAAGCAGAAGG
Found at i:1217530 original size:204 final size:204
Alignment explanation
Indices: 1217180--1217589 Score: 820
Period size: 204 Copynumber: 2.0 Consensus size: 204
1217170 GTTTGCTTAA
1217180 TCTTTTAAATGATTGAATTTATGCTATTTTCTAAGGTGGAGCAATTTAACAAATTTTAATCTTTA
1 TCTTTTAAATGATTGAATTTATGCTATTTTCTAAGGTGGAGCAATTTAACAAATTTTAATCTTTA
1217245 TTTCTTTGAATATTAAATGAATTAATGATTATTTTAATTCTTCAAGAATTATAGATTTTTGACAT
66 TTTCTTTGAATATTAAATGAATTAATGATTATTTTAATTCTTCAAGAATTATAGATTTTTGACAT
1217310 ATGGAAAGATTAGACCTTTCTTACCCTGTCTCAAACCCTAGAATAAAATACCTTGATTCTTTGCC
131 ATGGAAAGATTAGACCTTTCTTACCCTGTCTCAAACCCTAGAATAAAATACCTTGATTCTTTGCC
1217375 CAAAACAAC
196 CAAAACAAC
1217384 TCTTTTAAATGATTGAATTTATGCTATTTTCTAAGGTGGAGCAATTTAACAAATTTTAATCTTTA
1 TCTTTTAAATGATTGAATTTATGCTATTTTCTAAGGTGGAGCAATTTAACAAATTTTAATCTTTA
1217449 TTTCTTTGAATATTAAATGAATTAATGATTATTTTAATTCTTCAAGAATTATAGATTTTTGACAT
66 TTTCTTTGAATATTAAATGAATTAATGATTATTTTAATTCTTCAAGAATTATAGATTTTTGACAT
1217514 ATGGAAAGATTAGACCTTTCTTACCCTGTCTCAAACCCTAGAATAAAATACCTTGATTCTTTGCC
131 ATGGAAAGATTAGACCTTTCTTACCCTGTCTCAAACCCTAGAATAAAATACCTTGATTCTTTGCC
1217579 CAAAACAAC
196 CAAAACAAC
1217588 TC
1 TC
1217590 GTGGTCATTA
Statistics
Matches: 206, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
204 206 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (204 bp):
TCTTTTAAATGATTGAATTTATGCTATTTTCTAAGGTGGAGCAATTTAACAAATTTTAATCTTTA
TTTCTTTGAATATTAAATGAATTAATGATTATTTTAATTCTTCAAGAATTATAGATTTTTGACAT
ATGGAAAGATTAGACCTTTCTTACCCTGTCTCAAACCCTAGAATAAAATACCTTGATTCTTTGCC
CAAAACAAC
Found at i:1218238 original size:19 final size:20
Alignment explanation
Indices: 1218216--1218265 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
1218206 GGGAAAAAAT
1218216 AAAAA-AAAGAAA-AGAAGCA
1 AAAAAGAAAGAAACAGAAG-A
*
1218235 AAAAAGAAA-AAACATAAGA
1 AAAAAGAAAGAAACAGAAGA
1218254 AAAAAGAAAGAA
1 AAAAAGAAAGAA
1218266 CGAAAATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.80, C:0.04, G:0.14, T:0.02
Consensus pattern (20 bp):
AAAAAGAAAGAAACAGAAGA
Found at i:1218914 original size:22 final size:22
Alignment explanation
Indices: 1218886--1218940 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
1218876 TCTACCCCAT
1218886 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
* *
1218908 CAAACCTTTTAGCATCAAATGT
1 CAAACCTTTGAGCATCAAATGC
1218930 CAAACCTTTGA
1 CAAACCTTTGA
1218941 CCAAACATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:1219950 original size:106 final size:106
Alignment explanation
Indices: 1219753--1220786 Score: 1399
Period size: 106 Copynumber: 9.9 Consensus size: 106
1219743 GTGCCAATCA
* * * * * * * *
1219753 AGACAACACAAGTTCAACTTCACAACGAAGGGACAGCTGGTTATCAA-CAATAATTTTCCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTT
* *
1219817 CGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * * * *
1219858 AGATAACGCAAGTTCAACTTCACGATGAATGGACCGCTGGTTGTAAATAAACAATTTCCCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTT
*
1219923 CAGATCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* **
1219964 AGACAACAG-AAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAATAAACAACTTTTCAATT
1 AGACAAC-GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATT
*
1220028 TCAGAGCCAATTTTAACTTCACAACGAAGGATATTGGACTCC
65 TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * * * * *
1220070 AGACAACGCAAGTTCAACTTCACGACGAAGGAACTGCTGGTCGTCAACAAATAACTTCTCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTT
1220135 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
1220176 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGTTGGTTGTCAATAAACAA-----C---TT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTT
1220233 C----CCAATTTCAACTTCAC-ACGAAGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
1220269 AGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTC-A-CAACAACTTCCCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTT
*
1220332 CA-AGCCAATTTCAACTACACAACGAAGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * *
1220372 AGACAACGC-AGTTCAACTTCACAACGAA-GGACCGCTGGTTGTCAACAAACAAACTTCTCAATT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAAC-AACTTCCCAATT
1220435 TCAGAGCCAATTTCCAACTTCACAACGAAGGATATTGGACTCC
65 TCAGAGCCAATTT-CAACTTCACAACGAAGGATATTGGACTCC
* *
1220478 AGACAACGCAAGTTCAACTTCACGACGAAGGGGACCGCTGGTTGTCAACAAATACAATTTCCCAA
1 AGACAACGCAAGTTCAACTTCACGACGAA-GGGACCGCTGGTTGTCAA-TAA-ACAACTTCCCAA
* * * *
1220543 TTTCATAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCA
63 TTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * * *
1220587 AGACAACGCAATTTCAACTTCACGATGAAGGGACCACTGGTTGTCAATAAACAAC-TCCCAAATT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTT
* *
1220651 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTCGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * * *
1220692 AGACAACCCAAGTTCAACTTCACGACGAAGGGACCGATGGTTTGTCAACAAACAACTTCTCAATT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGG-TTGTCAATAAACAACTTCCCAATT
* *
1220757 TTAGAGCCAATTTCAACTTCACGACGAAGG
65 TCAGAGCCAATTTCAACTTCACAACGAAGG
1220787 GACCGCTGGT
Statistics
Matches: 830, Mismatches: 72, Indels: 52
0.87 0.08 0.05
Matches are distributed among these distances:
91 5 0.01
92 1 0.00
93 62 0.07
94 16 0.02
96 1 0.00
98 3 0.00
99 3 0.00
101 16 0.02
102 35 0.04
103 31 0.04
104 14 0.02
105 129 0.16
106 347 0.42
107 54 0.07
108 17 0.02
109 71 0.09
110 23 0.03
111 2 0.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (106 bp):
AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTT
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
Found at i:1220206 original size:43 final size:43
Alignment explanation
Indices: 1220145--1220299 Score: 150
Period size: 43 Copynumber: 3.4 Consensus size: 43
1220135 CAGAGCCAAT
1220145 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
* ** ** * * * *
1220188 TTCAACTTCACGACGAAGGGACCGTTGGTTGTCAATAAACAACTTCCCAAT
1 TTCAACTTCACAACGAA-GGA-TATTGG-ACTC--CAGACAA---CGCAAG
1220239 TTCAACTTCAC-ACGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
1220281 TTCAACTTCACAACGAAGG
1 TTCAACTTCACAACGAAGG
1220300 GACCGCTGGT
Statistics
Matches: 86, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
42 15 0.17
43 23 0.27
44 3 0.03
45 9 0.10
46 2 0.02
47 2 0.02
48 9 0.10
49 3 0.03
50 5 0.06
51 15 0.17
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (43 bp):
TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
Found at i:1220528 original size:109 final size:106
Alignment explanation
Indices: 1220234--1220786 Score: 814
Period size: 105 Copynumber: 5.2 Consensus size: 106
1220224 AAACAACTTC
*
1220234 CCAATTTCAACTTCAC-ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAA
1 CCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
1220298 GGGACCGCTGGTTGTC-AC-AACAACTTCCCAATTTCA-AG
66 GGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAG
* *
1220336 CCAATTTCAACTACACAACGAAGGATATTGGACTCCAGACAACGC-AGTTCAACTTCACAACGAA
1 CCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
*
1220400 -GGACCGCTGGTTGTCAACAAACAAACTTCTCAATTTCAGAG
66 GGGACCGCTGGTTGTCAACAAAC-AACTTCCCAATTTCAGAG
1220441 CCAATTTCCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGA
1 CCAATTT-CAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGA
* *
1220506 AGGGGACCGCTGGTTGTCAACAAATACAATTTCCCAATTTCATAG
65 A-GGGACCGCTGGTTGTCAAC-AA-ACAACTTCCCAATTTCAGAG
* * * * *
1220551 TCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAATTTCAACTTCACGATGAA
1 CCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* * *
1220616 GGGACCACTGGTTGTCAATAAACAAC-TCCCAAATTCAGAG
66 GGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAG
* * *
1220656 CCAATTTCAACTTCACAGCGAAGGATATTCGACTCCAGACAACCCAAGTTCAACTTCACGACGAA
1 CCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* * *
1220721 GGGACCGATGGTTTGTCAACAAACAACTTCTCAATTTTAGAG
66 GGGACCGCTGG-TTGTCAACAAACAACTTCCCAATTTCAGAG
*
1220763 CCAATTTCAACTTCACGACGAAGG
1 CCAATTTCAACTTCACAACGAAGG
1220787 GACCGCTGGT
Statistics
Matches: 407, Mismatches: 31, Indels: 21
0.89 0.07 0.05
Matches are distributed among these distances:
101 15 0.04
102 36 0.09
103 31 0.08
104 14 0.03
105 89 0.22
106 55 0.14
107 53 0.13
108 17 0.04
109 72 0.18
110 23 0.06
111 2 0.00
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (106 bp):
CCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
GGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAG
Found at i:1220593 original size:411 final size:413
Alignment explanation
Indices: 1219822--1220786 Score: 1413
Period size: 411 Copynumber: 2.3 Consensus size: 413
1219812 AATTTCGGAG
* *
1219822 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGATAACGCAAGTTCAACTTCACGATGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* * * * *
1219887 TGGACCGCTGGTTGTAAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTTCACAACGAAGG
66 GGGACCGCTGGTTGT-CA-CAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGG
* * *
1219952 ATATTGGACTCCAGACAACAGAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAATAAACA
129 ATATTGGACTCCAGACAACAGAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACA
* *
1220017 ACTTTTCAATTTCAGAGCCAATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
194 ACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
* *
1220082 TTCAACTTCACGACGAAGGAACTGCTGGTCGTCAACAAATAACTTCTCAATTTCAGAGCCAATTT
259 TTCAACTTCACGACGAAGGAACCGCTGGTCGTCAACAAATAACTTCCCAATTTCAGAGCCAATTT
* *
1220147 CAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
324 CAACTTCACAACGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCA
*
1220212 TTGGTTGTCAATAAACAA-C-TTC-
389 CTGGTTGTCAATAAACAACCATTCA
*
1220234 CCAATTTCAACTTCACA-CGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
*
1220298 GGGACCGCTGGTTGTCACAACAACTTCCCAATTTCA-AGCCAATTTCAACTACACAACGAAGGAT
66 GGGACCGCTGGTTGTCACAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGAT
*
1220362 ATTGGACTCCAGACAAC-GCAGTTCAACTTCACAACGAA-GGACCGCTGGTTGTCAACAAACAAA
131 ATTGGACTCCAGACAACAGAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAAC-AA
1220425 CTTCTCAATTTCAGAGCCAATTTCCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
195 CTTCTCAATTTCAGAGCCAATTT-CAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG
* * * * *
1220490 TTCAACTTCACGACGAAGGGGACCGCTGGTTGTCAACAAATACAATTTCCCAATTTCATAGTCAA
259 TTCAACTTCACGACGAA-GGAACCGCTGGTCGTCAACAAAT--AACTTCCCAATTTCAGAGCCAA
* * *
1220555 TTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAATTTCAACTTCACGATGAAGGGA
321 TTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGA
1220620 CCACTGGTTGTCAATAAACAACTCCCAAATTCAGA
386 CCACTGGTTGTCAATAAACAA---CC--ATTC--A
* *
1220655 GCCAATTTCAACTTCACAGCGAAGGATATTCGACTCCAGACAACCCAAGTTCAACTTCACGACGA
1 -CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGA
* * * *
1220720 AGGGACCGATGGTTTGTCAACAAACAACTTCTCAATTTTAGAGCCAATTTCAACTTCACGACGAA
65 AGGGACCGCTGG-TTGTC-AC-AACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAA
1220785 GG
127 GG
1220787 GACCGCTGGT
Statistics
Matches: 496, Mismatches: 36, Indels: 27
0.89 0.06 0.05
Matches are distributed among these distances:
406 20 0.04
407 43 0.09
408 100 0.20
409 37 0.07
410 1 0.00
411 156 0.31
412 17 0.03
415 1 0.00
418 3 0.01
422 17 0.03
423 54 0.11
424 5 0.01
425 2 0.00
426 16 0.03
427 24 0.05
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (413 bp):
CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
GGGACCGCTGGTTGTCACAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGAT
ATTGGACTCCAGACAACAGAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAAC
TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTT
CAACTTCACGACGAAGGAACCGCTGGTCGTCAACAAATAACTTCCCAATTTCAGAGCCAATTTCA
ACTTCACAACGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCACT
GGTTGTCAATAAACAACCATTCA
Found at i:1220831 original size:63 final size:64
Alignment explanation
Indices: 1220699--1220835 Score: 213
Period size: 63 Copynumber: 2.2 Consensus size: 64
1220689 TCCAGACAAC
* * *
1220699 CCAAGTTCAACTTCACGACGAAGGGACCGATGGTTTGTCAACAAACAACTTCTCAATTTTAGAG
1 CCAATTTCAACTTCACGACGAAGGGACCGATGGTTTGTCAACAAACAACTTCCCAATTTCAGAG
* * *
1220763 CCAATTTCAACTTCACGACGAAGGGACCGCTGG-TTGTCAATAAACAATTTCCCAATTTCAGAG
1 CCAATTTCAACTTCACGACGAAGGGACCGATGGTTTGTCAACAAACAACTTCCCAATTTCAGAG
1220826 CCAATTTCAA
1 CCAATTTCAA
1220836 TCACACGTAG
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
63 36 0.54
64 31 0.46
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (64 bp):
CCAATTTCAACTTCACGACGAAGGGACCGATGGTTTGTCAACAAACAACTTCCCAATTTCAGAG
Found at i:1221130 original size:100 final size:102
Alignment explanation
Indices: 1220768--1221160 Score: 368
Period size: 100 Copynumber: 3.9 Consensus size: 102
1220758 TAGAGCCAAT
* *
1220768 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTT
* *
1220833 CAATCACACGTAGGATATTGGACTCAAGACAACACAAG
66 CAATCA-GCGAAGGATATTGGACTCAAGACAACACAAG
* * *
1220871 TTCAAC-TCACGACGAAGGGAC-GCTGGTTGTC-ATAAACAACTTCCCAATTTTAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTT
* * * *
1220933 CAACTTCTCAGCGAAGGATCTTGAACCCAAGGCAACACAAG
66 CAA----TCAGCGAAGGATATTGGACTCAAGACAACACAAG
* * * *
1220974 CTC-ACTT--C-A-G-ATGG-CGGCTGATTGTCAAC-AA-AATTT--C-A-TTCAGAGTCAATTT
1 TTCAACTTCACGACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTT
**
1221026 CAATTTCACAGCGAAGGATATTGGACTCGTGACAACACAAG
66 CAA--T--CAGCGAAGGATATTGGACTCAAGACAACACAAG
* * *
1221067 TTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAGTTCCAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTT
*
1221132 CAACTTCACGACGGAGGATATTGGACTCA
66 CAA--TCA-G-CGAAGGATATTGGACTCA
1221161 GAACAATGCT
Statistics
Matches: 235, Mismatches: 31, Indels: 45
0.76 0.10 0.14
Matches are distributed among these distances:
91 2 0.01
93 44 0.19
94 5 0.02
95 1 0.00
96 1 0.00
97 6 0.03
98 15 0.06
99 5 0.02
100 47 0.20
101 13 0.06
102 22 0.09
103 34 0.14
104 6 0.03
105 1 0.00
106 33 0.14
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (102 bp):
TTCAACTTCACGACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTT
CAATCAGCGAAGGATATTGGACTCAAGACAACACAAG
Found at i:1221904 original size:37 final size:37
Alignment explanation
Indices: 1221850--1221954 Score: 131
Period size: 37 Copynumber: 2.8 Consensus size: 37
1221840 CCTTTTCGTC
* *
1221850 CTACTAGGATTCAAACTCCTAAAAATATGATAGAATT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* *
1221887 TTGA-TAGGATTTAAACTCCTAAAAATAGGATAGAGTT
1 CT-ACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* * *
1221924 CTACAATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTTAAACTCCTAAAAATAGGAT
1221955 CCACAAGCAC
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
36 1 0.02
37 56 0.97
38 1 0.02
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
Found at i:1222581 original size:10 final size:10
Alignment explanation
Indices: 1222491--1222589 Score: 51
Period size: 11 Copynumber: 9.4 Consensus size: 10
1222481 GCATTTTTAT
1222491 TATTACTATTA
1 TATTA-TATTA
1222502 TATTTATTATTA
1 TA-TTA-TATTA
*
1222514 TTTTACTATTA
1 TATTA-TATTA
* * *
1222525 TATTTTCCTTT
1 TATTAT-ATTA
*
1222536 TATTCTACTTA
1 TATTATA-TTA
1222547 T-TTATATATA
1 TATTATAT-TA
1222557 TATGTATATT-
1 TAT-TATATTA
*
1222567 T-TTATATTT
1 TATTATATTA
1222576 TATTATATTA
1 TATTATATTA
1222586 TATT
1 TATT
1222590 TTTATTTTTC
Statistics
Matches: 68, Mismatches: 12, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
8 6 0.09
9 3 0.04
10 20 0.29
11 25 0.37
12 14 0.21
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (10 bp):
TATTATATTA
Found at i:1222642 original size:2 final size:2
Alignment explanation
Indices: 1222637--1222672 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
1222627 GTTTATTTTT
*
1222637 TA TA TA TT TA TA TA T- TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1222673 GCGTATGTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:1222646 original size:15 final size:15
Alignment explanation
Indices: 1222636--1222672 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
1222626 TGTTTATTTT
1222636 TTATATATTTATATA
1 TTATATATTTATATA
*
1222651 TTATATATATATATA
1 TTATATATTTATATA
1222666 -TATATAT
1 TTATATAT
1222673 GCGTATGTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATATATTTATATA
Found at i:1223216 original size:23 final size:23
Alignment explanation
Indices: 1223183--1223232 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
1223173 GTTTATTTCG
*
1223183 TTTTATTTATTTTCTT-TTT-TT
1 TTTTATTTATTTTATTATTTGTT
1223204 TTTTATATATATTTTATTATTTGTT
1 TTTTAT-T-TATTTTATTATTTGTT
1223229 TTTT
1 TTTT
1223233 TTACTTACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.25
22 1 0.04
23 8 0.33
24 3 0.12
25 6 0.25
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (23 bp):
TTTTATTTATTTTATTATTTGTT
Found at i:1223220 original size:28 final size:29
Alignment explanation
Indices: 1223188--1223257 Score: 74
Period size: 28 Copynumber: 2.4 Consensus size: 29
1223178 TTTCGTTTTA
1223188 TTTATTTTCTTTTTTTTTTTA-TATA-TAT
1 TTTATTTTCTTTTTTTTTTTACT-TACTAT
* *
1223216 TTTATTAT-TTGTTTTTTTTACTTACTAT
1 TTTATTTTCTTTTTTTTTTTACTTACTAT
1223244 TTTATATTTGCTTT
1 TTTAT-TTT-CTTT
1223258 CTTCATTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
27 13 0.39
28 16 0.48
29 2 0.06
31 2 0.06
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (29 bp):
TTTATTTTCTTTTTTTTTTTACTTACTAT
Found at i:1223230 original size:27 final size:27
Alignment explanation
Indices: 1223200--1223253 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
1223190 TATTTTCTTT
1223200 TTTTTTTTA-TATA-TATTTTATTATTTG
1 TTTTTTTTACT-TACTATTTTA-TATTTG
1223227 TTTTTTTTACTTACTATTTTATATTTG
1 TTTTTTTTACTTACTATTTTATATTTG
1223254 CTTTCTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (27 bp):
TTTTTTTTACTTACTATTTTATATTTG
Found at i:1224095 original size:21 final size:22
Alignment explanation
Indices: 1224053--1224095 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
1224043 CGATATTGCC
1224053 TCTGGTATCGATACTGAAGGTA
1 TCTGGTATCGATACTGAAGGTA
1224075 TCTGGTATCGATACT-AAGGTA
1 TCTGGTATCGATACTGAAGGTA
1224096 ATTTTTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.33
Consensus pattern (22 bp):
TCTGGTATCGATACTGAAGGTA
Found at i:1226364 original size:15 final size:16
Alignment explanation
Indices: 1226334--1226368 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1226324 TCCTAATTGA
*
1226334 TAAAATTTTAATATAT
1 TAAAATTTGAATATAT
1226350 TAAAATTTGAA-ATAT
1 TAAAATTTGAATATAT
1226365 TAAA
1 TAAA
1226369 TAAAACATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
TAAAATTTGAATATAT
Found at i:1227272 original size:11 final size:12
Alignment explanation
Indices: 1227249--1227277 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
1227239 TACAGGGGTT
1227249 GAGGGAGGGGAA
1 GAGGGAGGGGAA
1227261 GAGGGA-GGGAA
1 GAGGGAGGGGAA
1227272 GAGGGA
1 GAGGGA
1227278 AAACGGGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (12 bp):
GAGGGAGGGGAA
Found at i:1229673 original size:42 final size:41
Alignment explanation
Indices: 1229626--1229723 Score: 101
Period size: 42 Copynumber: 2.4 Consensus size: 41
1229616 TTGTTTTATA
* * * *
1229626 TATAAACGCCGCTAATTTACCACTTTATTGCGGCGTTT-ATGG
1 TATAAACGCCGCTAA-TTAACACTCTATTGCGGCATTTGA-GC
* *
1229668 TATAAATGTCGCTACATTAACACTCTATTGCGGCATTTGAGC
1 TATAAACGCCGCTA-ATTAACACTCTATTGCGGCATTTGAGC
1229710 TA-AAACGCCGCTAA
1 TATAAACGCCGCTAA
1229724 ATGTCTACTC
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
40 1 0.02
41 9 0.20
42 34 0.74
43 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (41 bp):
TATAAACGCCGCTAATTAACACTCTATTGCGGCATTTGAGC
Found at i:1238623 original size:52 final size:51
Alignment explanation
Indices: 1238544--1238645 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 51
1238534 TAAAGAAATG
* * * *
1238544 ATAGGTTGTAAAGAAATATCGGTTTGAACACGTTGAAATTCCTTGTAACTA
1 ATAGGCTGTAAAGAAATATCGGTTTGAACACGCTAAAATTCCTTATAACTA
*
1238595 ATAGGCTGTAAAGAAAATATCGGTTTGAACAGGCTAAAATTCCTTATAACT
1 ATAGGCTGTAAAG-AAATATCGGTTTGAACACGCTAAAATTCCTTATAACT
1238646 CTCCCCCTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 12 0.27
52 33 0.73
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (51 bp):
ATAGGCTGTAAAGAAATATCGGTTTGAACACGCTAAAATTCCTTATAACTA
Found at i:1240441 original size:14 final size:15
Alignment explanation
Indices: 1240408--1240449 Score: 68
Period size: 14 Copynumber: 2.8 Consensus size: 15
1240398 TAATACCATA
1240408 TAGAAAACAGACTGTG
1 TAGAAAACAGAC-GTG
1240424 TAGAAAACAGAC-TG
1 TAGAAAACAGACGTG
1240438 TAGAAAACAGAC
1 TAGAAAACAGAC
1240450 AAGTCTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 14 0.54
16 12 0.46
ACGTcount: A:0.50, C:0.14, G:0.21, T:0.14
Consensus pattern (15 bp):
TAGAAAACAGACGTG
Found at i:1241583 original size:43 final size:43
Alignment explanation
Indices: 1241536--1241657 Score: 172
Period size: 43 Copynumber: 2.8 Consensus size: 43
1241526 TTTGTTCAAC
* * * *
1241536 AAACGCCGTAATAGGTGTTGATATTTAGCGGTGTTTGTATTAT
1 AAACGTCGCAATAGGTGTTAAGATTTAGCGGTGTTTGTATTAT
* * * *
1241579 AAACGTCACAATAGGTGTTAAGGTTTAGTGGTGTTTGTCTTAT
1 AAACGTCGCAATAGGTGTTAAGATTTAGCGGTGTTTGTATTAT
1241622 AAACGTCGCAATAGGTGTTAAGATTTAGCGGTGTTT
1 AAACGTCGCAATAGGTGTTAAGATTTAGCGGTGTTT
1241658 CCCCCAAAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (43 bp):
AAACGTCGCAATAGGTGTTAAGATTTAGCGGTGTTTGTATTAT
Found at i:1242203 original size:72 final size:73
Alignment explanation
Indices: 1242086--1242232 Score: 278
Period size: 72 Copynumber: 2.0 Consensus size: 73
1242076 TCCACCTCTT
*
1242086 ATGACATCAATAACATCAATCTCTATATCCATAACAAGCAACATCAAATC-AATATAATAAATAA
1 ATGACATCAATAACATCAATCTATATATCCATAACAAGCAACATCAAATCTAATATAATAAATAA
1242150 AAGTTTTC
66 AAGTTTTC
1242158 ATGACATCAATAACATCAATCTATATATCCATAACAAGCAACATCAAATCTAATATAATAAATAA
1 ATGACATCAATAACATCAATCTATATATCCATAACAAGCAACATCAAATCTAATATAATAAATAA
1242223 AAGTTTTC
66 AAGTTTTC
1242231 AT
1 AT
1242233 TAACGCCGCT
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
72 49 0.67
73 24 0.33
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.29
Consensus pattern (73 bp):
ATGACATCAATAACATCAATCTATATATCCATAACAAGCAACATCAAATCTAATATAATAAATAA
AAGTTTTC
Found at i:1244643 original size:16 final size:16
Alignment explanation
Indices: 1244622--1244655 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
1244612 GTTCCATTTC
1244622 GTTGCTAAAGTTAGTG
1 GTTGCTAAAGTTAGTG
1244638 GTTGCTAAAGTTAGTG
1 GTTGCTAAAGTTAGTG
1244654 GT
1 GT
1244656 GAGCAAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.32, T:0.38
Consensus pattern (16 bp):
GTTGCTAAAGTTAGTG
Found at i:1245206 original size:3 final size:3
Alignment explanation
Indices: 1245198--1245226 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
1245188 TCAGACAGTT
1245198 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1245227 TTGAGGAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:1250461 original size:5 final size:5
Alignment explanation
Indices: 1247198--1250458 Score: 4690
Period size: 5 Copynumber: 651.8 Consensus size: 5
1247188 TACTATATTG
* * * * * * * * * *
1247198 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1247248 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * *
1247298 TATGA TATGA TATGA TATGA TATG- -ATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1247346 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1247396 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * *
1247446 TATGA TATGA TATGA TATGA TATGA TATG- -ATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * *
1247494 TATGA TATGAT ATATGA TATG- -ATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATG-T -TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1247544 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1247594 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1247644 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * * *
1247694 TATAT GATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1247744 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1247794 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1247844 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
*
1247894 TATGA TATGAT AATATGTT TATGT TATGTT TATGT TATGTT TATGT TATGT
1 TATGT TATG-T --TATG-T TATGT TATG-T TATGT TATG-T TATGT TATGT
*
1247945 TATGTT TATGT TATGTT TATGT TATGTT TATTT TATGTT TAAT-T TATGTT
1 TATG-T TATGT TATG-T TATGT TATG-T TATGT TATG-T T-ATGT TATG-T
*
1247995 TATGTT TATTT TATGTT TATGT TATGTT TATGT TATGT TATGT TATGT
1 TATG-T TATGT TATG-T TATGT TATG-T TATGT TATGT TATGT TATGT
1248043 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248093 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248143 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248193 TATGT TATTTGT TATGT TATGT TATGT TATGT TATGT TATG- T-TGT TATGT
1 TATGT TA--TGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248243 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248293 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248343 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248393 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248443 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248493 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248543 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATG- TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248592 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248642 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248692 TATGT TATGT TATGT TATGT TATG- TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248741 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248791 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248841 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248891 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248941 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1248991 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249041 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249091 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249141 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249191 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249241 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
*
1249291 TATGT TATGT TATGT TATGT TATGT TTTGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249341 TATGT TATGT TATTTGT TATGT TATGT TATGT TATGT TATG- T-TGT TATGT
1 TATGT TATGT TA--TGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249391 TATGT TATGT TATGT TATGT TATG- TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249440 TATGT T-TGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249489 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249539 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249589 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249639 TATGT TATGT TATG- T-TGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249687 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249737 TATGT TATG- TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249786 TATGT TATGT TATGT TATGT TATGT TATGT TATG- T-TGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249834 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249884 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249934 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1249984 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1250034 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGTT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATG-T TATGT
1250085 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1250135 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1250185 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* *
1250235 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGC TATGC
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * *
1250285 TATGT TATGT TATGC TATGT TATGT TATGC TATGC TATGT TATGC TATGC
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * *
1250335 TATGT TATGT TATGC TATGT TATGC TATGC TATGT TATGT TATGC TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * * * * * * * *
1250385 TATGT TATGC TAGGT TATGC TAGGC TATGC TATGC TATGC TATGC TATGC
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT
* * * *
1250435 TATGC TATGC TATGC TATGC TATG
1 TATGT TATGT TATGT TATGT TATG
1250459 CTAGGCTAGG
Statistics
Matches: 3179, Mismatches: 37, Indels: 80
0.96 0.01 0.02
Matches are distributed among these distances:
3 17 0.01
4 30 0.01
5 3056 0.96
6 55 0.02
7 16 0.01
8 5 0.00
ACGTcount: A:0.24, C:0.01, G:0.20, T:0.55
Consensus pattern (5 bp):
TATGT
Found at i:1251638 original size:20 final size:19
Alignment explanation
Indices: 1251613--1251662 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 19
1251603 CACAAGAGGA
1251613 GTATCGATACTACA-GGGTTG
1 GTATCGATACT-CATGGG-TG
1251633 GTATCGATACTCATTGGGTG
1 GTATCGATACTCA-TGGGTG
1251653 GTATCGATAC
1 GTATCGATAC
1251663 CGGGATCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.07
20 23 0.82
21 3 0.11
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (19 bp):
GTATCGATACTCATGGGTG
Found at i:1253568 original size:2 final size:2
Alignment explanation
Indices: 1253561--1253588 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1253551 ATATGAAAGA
1253561 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1253589 GGTTAGATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1254199 original size:22 final size:22
Alignment explanation
Indices: 1254174--1254240 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 22
1254164 AATTTTAGTA
1254174 TTTATTTCTTTTTTCATT-TAAT
1 TTTATTTCTTTTTT-ATTATAAT
*
1254196 TTTATATCTTTTTTATTCATAAT
1 TTTATTTCTTTTTTATT-ATAAT
*
1254219 TTATATTTATGTTTTTAATTAT
1 TT-TATTTCT-TTTTT-ATTAT
1254241 TCATCTATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 3 0.08
22 13 0.35
23 6 0.16
24 5 0.14
25 7 0.19
26 3 0.08
ACGTcount: A:0.24, C:0.06, G:0.01, T:0.69
Consensus pattern (22 bp):
TTTATTTCTTTTTTATTATAAT
Found at i:1255707 original size:15 final size:15
Alignment explanation
Indices: 1255689--1255721 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
1255679 ATTTTTTAAT
1255689 AAATTATATTTTTCA
1 AAATTATATTTTTCA
*
1255704 AAA-TATATTTTTCT
1 AAATTATATTTTTCA
1255718 AAAT
1 AAAT
1255722 GGGAGCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
14 13 0.81
15 3 0.19
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (15 bp):
AAATTATATTTTTCA
Found at i:1261501 original size:110 final size:110
Alignment explanation
Indices: 1261308--1261521 Score: 365
Period size: 110 Copynumber: 1.9 Consensus size: 110
1261298 GCTGGTGTGC
* * *
1261308 AATATCCCAAACATCAGGTCAGTTACTAAAGTGTAAGAATTTAAAATTTAGTGGTTTGATTTTGA
1 AATATCCCAAACATCAGGTCAGTGACTAAAGTATAAGAATTCAAAATTTAGTGGTTTGATTTTGA
* * * *
1261373 TTAATTGAAATGTTCAAGGATTGATTTGGAAATTTTTGTAATTAT
66 TAAACTGAAATATTCAAGGATTGAGTTGGAAATTTTTGTAATTAT
1261418 AATATCCCAAACATCAGGTCAGTGACTAAAGTATAAGAATTCAAAATTTAGTGGTTTGATTTTGA
1 AATATCCCAAACATCAGGTCAGTGACTAAAGTATAAGAATTCAAAATTTAGTGGTTTGATTTTGA
1261483 TAAACTGAAATATTCAAGGATTGAGTTGGAAATTTTTGT
66 TAAACTGAAATATTCAAGGATTGAGTTGGAAATTTTTGT
1261522 TTAGGATTAA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
110 97 1.00
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.37
Consensus pattern (110 bp):
AATATCCCAAACATCAGGTCAGTGACTAAAGTATAAGAATTCAAAATTTAGTGGTTTGATTTTGA
TAAACTGAAATATTCAAGGATTGAGTTGGAAATTTTTGTAATTAT
Found at i:1262775 original size:57 final size:57
Alignment explanation
Indices: 1262712--1262820 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
1262702 ATTTCATTGC
* * ** *
1262712 TATGCGTATATGTTTTATGTGAATAAACGTTAATTTGAATAATGCTATGTGAAATAT
1 TATGCGTATATGTTCTACGTGAATAAACGACAATTTCAATAATGCTATGTGAAATAT
* *
1262769 TATGCGTATATGTTCTACGTGAATAAATGACAATTTCAATAATGTTATGTGA
1 TATGCGTATATGTTCTACGTGAATAAACGACAATTTCAATAATGCTATGTGA
1262821 GCACTTATAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 45 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (57 bp):
TATGCGTATATGTTCTACGTGAATAAACGACAATTTCAATAATGCTATGTGAAATAT
Found at i:1262939 original size:23 final size:24
Alignment explanation
Indices: 1262909--1262994 Score: 92
Period size: 23 Copynumber: 3.7 Consensus size: 24
1262899 ACGCAGACTC
1262909 TCGGGAC-AATTCTATGTGGTCCT
1 TCGGGACAAATTCTATGTGGTCCT
* * *
1262932 TCGGGAC-AATTCTACGCGGTCCG
1 TCGGGACAAATTCTATGTGGTCCT
1262955 TCGGGACAAATT-TATGTGG-CACT
1 TCGGGACAAATTCTATGTGGTC-CT
1262978 TCGGTG-CAAATTCTATG
1 TCGG-GACAAATTCTATG
1262995 CGTCAGTTTC
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
22 1 0.02
23 43 0.81
24 9 0.17
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (24 bp):
TCGGGACAAATTCTATGTGGTCCT
Found at i:1263545 original size:11 final size:11
Alignment explanation
Indices: 1263529--1263555 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
1263519 ATCGTATCCA
1263529 GGTCGGGTACG
1 GGTCGGGTACG
1263540 GGTCGGGTACG
1 GGTCGGGTACG
1263551 GGTCG
1 GGTCG
1263556 AGGGTGTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.19, G:0.56, T:0.19
Consensus pattern (11 bp):
GGTCGGGTACG
Found at i:1264254 original size:64 final size:64
Alignment explanation
Indices: 1264175--1264314 Score: 165
Period size: 64 Copynumber: 2.2 Consensus size: 64
1264165 CGGATCCTGG
* * *
1264175 CAGGTCGGGTAAAATCAGATACATGTCA-AGTCAGGTAAATTTGACACCAGATCCAGATCGGGCT
1 CAGGTCAGGTCAAATCAG-TACAGGTCATAGTCAGGTAAATTTGACACCAGATCCAGATCGGGCT
* * * ** ** *
1264239 CAGGTCAGGTCAAATCAGTTCGGGTTATTTTCAGGTTGATTTGACACCAGATCCAGATCGGGTT
1 CAGGTCAGGTCAAATCAGTACAGGTCATAGTCAGGTAAATTTGACACCAGATCCAGATCGGGCT
1264303 CAGGTCAGGTCA
1 CAGGTCAGGTCA
1264315 TTTTTAGTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
63 5 0.08
64 59 0.92
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (64 bp):
CAGGTCAGGTCAAATCAGTACAGGTCATAGTCAGGTAAATTTGACACCAGATCCAGATCGGGCT
Found at i:1265226 original size:210 final size:213
Alignment explanation
Indices: 1264633--1265447 Score: 1302
Period size: 210 Copynumber: 3.8 Consensus size: 213
1264623 ATTTAAGAAT
1264633 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACA-T-A-GAG
*
1264698 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAATACTAAATTATAC
63 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATAC
* * *
1264763 CCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAATTAAGTAATAAGTATGGATCAATTTCATA
128 CCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCATA
1264828 TGCAAATAAAATTTGGAGGAC
193 TGCAAATAAAATTTGGAGGAC
*
1264849 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAATAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACA-T-A-GAG
* *
1264914 GGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATATAAAAAAGTACTAAATTATAC
63 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATAC
1264979 CCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCATA
128 CCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCATA
1265044 TGCAAATAAAATTTGGAGGAC
193 TGCAAATAAAATTTGGAGGAC
* * *
1265065 TAAATTGAAAAAATATGAAATTACAAATAAAATTTTAAATATATTAAACAACACA-A-A-AGGGA
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATAGAGGGA
* *
1265127 TCAAATAGAAATAATTTTAAATTTTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCA
66 TCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCA
* * * **
1265192 TTTAAAAAGTTATAGGCCAATTTAAAAATAGAAATAAGTAATAAATATGAGTCAATTTCAGGTGC
131 TTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCATATGC
1265257 AAATAAAATTTGGAGGAC
196 AAATAAAATTTGGAGGAC
*
1265275 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATATATTAAACAACACA-A-A-AGGGA
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATAGAGGGA
* * * *
1265337 TCAAATCGAAATAATTTTAAATTTTGAGATTGAAATTAATACAAAAATGTACTAAATTATACTCA
66 TCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCA
* *
1265402 TTTAAAAAGTTATGGGCCAA-TTAATAAATAAAAATAAGTAGTAAGT
131 TTTAAAAAGTTATGGGCCAATTTAA-AAATAGAAATAAGTAATAAGT
1265448 TGAGAGAAAA
Statistics
Matches: 568, Mismatches: 30, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
209 4 0.01
210 302 0.53
212 1 0.00
215 1 0.00
216 260 0.46
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (213 bp):
TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATAGAGGGA
TCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCA
TTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCATATGC
AAATAAAATTTGGAGGAC
Found at i:1265436 original size:426 final size:426
Alignment explanation
Indices: 1264633--1265447 Score: 1306
Period size: 426 Copynumber: 1.9 Consensus size: 426
1264623 ATTTAAGAAT
*
1264633 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
1 TAAATTGAAAAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACA-T-A-GAG
*
1264698 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAATACTAAATTATAC
63 GGATCAAATAGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAATACTAAATTATAC
* * * *
1264763 CCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAATTAAGTAATAAGTATGGATCAATTTCATA
128 CCATTTAAAAAGTTATAGGCCAATTAAAAAATAGAAATAAGTAATAAATATGGATCAATTTCAGA
1264828 TGCAAATAAAATTTGGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAAT
193 TGCAAATAAAATTTGGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAAT
*
1264893 TAAATAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATA
258 TAAACAACACACA-T-A-GAGGGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATA
*
1264958 TAAAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAA
320 CAAAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAA
1265023 TAAGTATGGGTCAATTTCATATGCAAATAAAATTTGGAGGAC
385 TAAGTATGGGTCAATTTCATATGCAAATAAAATTTGGAGGAC
* *
1265065 TAAATTGAAAAAATATGAAATTACAAATAAAATTTTAAATATATTAAACAACACA-A-A-AGGGA
1 TAAATTGAAAAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATAGAGGGA
* *
1265127 TCAAATAGAAATAATTTTAAATTTTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCA
66 TCAAATAGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAATACTAAATTATACCCA
* *
1265192 TTTAAAAAGTTATAGGCCAATTTAAAAATAGAAATAAGTAATAAATAT-GAGTCAATTTCAGGTG
131 TTTAAAAAGTTATAGGCCAATTAAAAAATAGAAATAAGTAATAAATATGGA-TCAATTTCAGATG
*
1265256 CAAATAAAATTTGGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATATATTA
195 CAAATAAAATTTGGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTA
*
1265321 AACAACACA-A-A-AGGGATCAAATCGAAATAATTTTAAATTTTGA-GATTGAAATTAATACAAA
260 AACAACACACATAGAGGGATCAAATCGAAATAATTTTAAATTGTGATG-TTGAAATTAATACAAA
* * * *
1265382 AATGTACTAAATTATACTCATTTAAAAAGTTATGGGCCAA-TTAATAAATAAAAATAAGTAGTAA
324 AAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTTAA-AAATAGAAATAAGTAATAA
1265446 GT
388 GT
1265448 TGAGAGAAAA
Statistics
Matches: 360, Mismatches: 20, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
419 5 0.01
420 103 0.29
422 1 0.00
425 3 0.01
426 194 0.54
428 1 0.00
431 1 0.00
432 52 0.14
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (426 bp):
TAAATTGAAAAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATAGAGGGA
TCAAATAGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAATACTAAATTATACCCA
TTTAAAAAGTTATAGGCCAATTAAAAAATAGAAATAAGTAATAAATATGGATCAATTTCAGATGC
AAATAAAATTTGGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
ACAACACACATAGAGGGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAAA
AGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTA
TGGGTCAATTTCATATGCAAATAAAATTTGGAGGAC
Found at i:1265486 original size:2 final size:2
Alignment explanation
Indices: 1265473--1265563 Score: 51
Period size: 2 Copynumber: 44.0 Consensus size: 2
1265463 AAAACAACTA
* * * *
1265473 AT AT AG AT AT AT AT AT A- AT AT AA ACT AT AT AGT TT AT AT AT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT
* * * *
1265516 AGT AT AT GT AT -T AT AT AT AA AA ACT AT AT AGT TT AT AT AT AT
1 A-T AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT
1265558 AT AT AT
1 AT AT AT
1265564 TATGTATAAA
Statistics
Matches: 68, Mismatches: 14, Indels: 14
0.71 0.15 0.15
Matches are distributed among these distances:
1 2 0.03
2 61 0.90
3 5 0.07
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.44
Consensus pattern (2 bp):
AT
Found at i:1265513 original size:20 final size:20
Alignment explanation
Indices: 1265490--1265703 Score: 105
Period size: 20 Copynumber: 10.1 Consensus size: 20
1265480 TATATATATA
1265490 ATATAAACTATATAGTTTAT
1 ATATAAACTATATAGTTTAT
*
1265510 ATATAAAGTATAT-GTATTAT
1 ATATAAACTATATAGT-TTAT
1265530 ATATAAAAACTATATAGTTTAT
1 ATAT--AAACTATATAGTTTAT
* * *
1265552 ATATATA-TATATTATGTATAA
1 ATATAAACTATA-TA-GTTTAT
1265573 AGTATAAACTATATA-TACCATGTAT
1 A-TATAAACTATATAGT----T-TAT
1265598 AAACTATAATACTATATAGTTTAT
1 --A-TATAA-ACTATATAGTTTAT
* * * **
1265622 ACATTAACTATTTA-ACTAT
1 ATATAAACTATATAGTTTAT
* *
1265641 A-AGAAACTACATAGTTTAT
1 ATATAAACTATATAGTTTAT
* *
1265660 ATATAAATTATATATGAATTAT
1 ATATAAACTATATA-G-TTTAT
* *
1265682 ATATAAACTATACAATTTAT
1 ATATAAACTATATAGTTTAT
1265702 AT
1 AT
1265704 TTATATATTA
Statistics
Matches: 145, Mismatches: 28, Indels: 42
0.67 0.13 0.20
Matches are distributed among these distances:
18 8 0.06
19 14 0.10
20 47 0.32
21 9 0.06
22 40 0.28
23 6 0.04
24 3 0.02
25 3 0.02
27 6 0.04
28 8 0.06
29 1 0.01
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (20 bp):
ATATAAACTATATAGTTTAT
Found at i:1265545 original size:42 final size:41
Alignment explanation
Indices: 1265484--1265587 Score: 138
Period size: 42 Copynumber: 2.5 Consensus size: 41
1265474 TATAGATATA
1265484 TATATAATATAAACTATATAGTTTATATATAAAGTATATGTAT-
1 TATAT-ATATAAACTATATAGTTTATATATAAA-TATAT-TATG
* *
1265527 TATATATAAAAACTATATAGTTTATATATATATATATTATG
1 TATATATATAAACTATATAGTTTATATATAAATATATTATG
*
1265568 TATAAAGTATAAACTATATA
1 TATATA-TATAAACTATATA
1265588 TACCATGTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
40 3 0.05
41 10 0.18
42 37 0.67
43 5 0.09
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (41 bp):
TATATATATAAACTATATAGTTTATATATAAATATATTATG
Found at i:1265595 original size:27 final size:28
Alignment explanation
Indices: 1265555--1265615 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
1265545 AGTTTATATA
** *
1265555 TATATATATTATGTATAAAGTATAA-AC
1 TATATATACCATGTATAAACTATAATAC
1265582 TATATATACCATGTATAAACTATAATAC
1 TATATATACCATGTATAAACTATAATAC
1265610 TATATA
1 TATATA
1265616 GTTTATACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 22 0.73
28 8 0.27
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.39
Consensus pattern (28 bp):
TATATATACCATGTATAAACTATAATAC
Found at i:1265873 original size:11 final size:11
Alignment explanation
Indices: 1265738--1265864 Score: 88
Period size: 11 Copynumber: 11.9 Consensus size: 11
1265728 ATTATATGTA
1265738 TATATATATA-
1 TATATATATAC
**
1265748 TATATATATTT
1 TATATATATAC
*
1265759 TATATTATATAAA
1 TATA-TATAT-AC
1265772 TATATATATA-
1 TATATATATAC
* *
1265782 TATTTATATAT
1 TATATATATAC
1265793 TATAT-TATA-
1 TATATATATAC
* *
1265802 TTTATATATAT
1 TATATATATAC
*
1265813 TATATTTATAC
1 TATATATATAC
*
1265824 TATATTTATA-
1 TATATATATAC
1265834 TAT-TATATAC
1 TATATATATAC
*
1265844 TATTTATATA-
1 TATATATATAC
1265854 TATACTATATA
1 TATA-TATATA
1265865 TGAACTATAG
Statistics
Matches: 97, Mismatches: 11, Indels: 17
0.78 0.09 0.14
Matches are distributed among these distances:
9 9 0.09
10 35 0.36
11 39 0.40
12 10 0.10
13 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (11 bp):
TATATATATAC
Found at i:1265927 original size:2 final size:2
Alignment explanation
Indices: 1265657--1265909 Score: 140
Period size: 2 Copynumber: 129.0 Consensus size: 2
1265647 CTACATAGTT
* * *
1265657 TA TA TA TA AA T- TA TA TA TGA -A T- TA TA TA TA AA CTA TA CA -A
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA -TA TA TA TA
* * * * * *
1265697 TT TA TA TT TA TA TA T- TA TA AA TA TG TA TA -A AA T- TA TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
1265736 TA TA TA TA TA TA TA TA TA TA T- TT TA TA T- TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
1265776 TA TA TA TA TT TA TA TA T- TA TA T- TA TA TT TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
1265815 TA TT TA TA CTA TA TT TA TA TA T- TA TA TA CTA TT TA TA TA TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
1265858 CTA TA TA TGA -A CTA TA GTT TA CA TA TGA -A CTA TA TA TA TA AA
1 -TA TA TA T-A TA -TA TA -TA TA TA TA T-A TA -TA TA TA TA TA TA
1265900 TA TA TA TA TA
1 TA TA TA TA TA
1265910 AGGTTGATAT
Statistics
Matches: 191, Mismatches: 35, Indels: 50
0.69 0.13 0.18
Matches are distributed among these distances:
1 15 0.08
2 163 0.85
3 13 0.07
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1265945 original size:18 final size:18
Alignment explanation
Indices: 1265919--1266033 Score: 106
Period size: 18 Copynumber: 5.9 Consensus size: 18
1265909 AAGGTTGATA
* *
1265919 TTTATATATGAACTATAG
1 TTTACATATAAACTATAG
1265937 TTTACATATAAACTATATAG
1 TTTACATATAAAC--TATAG
*
1265957 TTTATATACT-AACTATAG
1 TTTACATA-TAAACTATAG
1265975 TTTACATATAAACTATAG
1 TTTACATATAAACTATAG
1265993 TTAATATTTACATATAAACTATAG
1 ------TTTACATATAAACTATAG
*
1266017 TTTACATATGAACTATA
1 TTTACATATAAACTATA
1266034 TATATAAACT
Statistics
Matches: 82, Mismatches: 5, Indels: 20
0.77 0.05 0.19
Matches are distributed among these distances:
17 1 0.01
18 47 0.57
20 15 0.18
21 1 0.01
24 18 0.22
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.42
Consensus pattern (18 bp):
TTTACATATAAACTATAG
Found at i:1265952 original size:80 final size:78
Alignment explanation
Indices: 1265862--1266033 Score: 197
Period size: 80 Copynumber: 2.2 Consensus size: 78
1265852 TATATACTAT
* * *
1265862 ATATGAACTATAGTTTACATA-TGAACTATA-TATATAAATATATA-TATAAGGTTGATATTTAT
1 ATATGAACTATAGTTTACATACT-AACTATAGT-T-TAAATATAAACTAT-A-GTTAATATTTAC
*
1265924 ATATGAACTATAGTTTAC
61 ATATAAACTATAGTTTAC
* * *
1265942 ATATAAACTATATAGTTTATATACTAACTATAGTTTACATATAAACTATAGTTAATATTTACATA
1 ATATGAAC--TATAGTTTACATACTAACTATAGTTTAAATATAAACTATAGTTAATATTTACATA
1266007 TAAACTATAGTTTAC
64 TAAACTATAGTTTAC
1266022 ATATGAACTATA
1 ATATGAACTATA
1266034 TATATAAACT
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
78 4 0.05
80 41 0.52
81 9 0.11
82 23 0.29
83 2 0.03
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (78 bp):
ATATGAACTATAGTTTACATACTAACTATAGTTTAAATATAAACTATAGTTAATATTTACATATA
AACTATAGTTTAC
Found at i:1265962 original size:38 final size:38
Alignment explanation
Indices: 1265916--1266038 Score: 158
Period size: 38 Copynumber: 3.1 Consensus size: 38
1265906 TATAAGGTTG
1265916 ATATTTATATATGAACTATAGTTTACATATAAACTATAT
1 ATATTTATATAT-AACTATAGTTTACATATAAACTATAT
*
1265955 A-GTTTATATACTAACTATAGTTTACATATAAACTATAGTT
1 ATATTTATATA-TAACTATAGTTTACATATAAACTATA--T
* *
1265995 AATATTTACATATAAACTATAGTTTACATATGAACTATAT
1 -ATATTTATATAT-AACTATAGTTTACATATAAACTATAT
1266035 ATAT
1 ATAT
1266039 AAACTATATA
Statistics
Matches: 74, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
38 33 0.45
39 6 0.08
40 2 0.03
41 2 0.03
42 31 0.42
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (38 bp):
ATATTTATATATAACTATAGTTTACATATAAACTATAT
Found at i:1266034 original size:80 final size:75
Alignment explanation
Indices: 1265916--1266058 Score: 205
Period size: 80 Copynumber: 1.8 Consensus size: 75
1265906 TATAAGGTTG
* * *
1265916 ATATTTATATATGAACTATAGTTTACATATAAACTATATAGTTTATATACTAACTATAGTTTACA
1 ATATTTACATATAAACTATAGTTTACATATAAACTATATA---TATAAACT-A-TATAGTTTACA
1265981 TATAAACTATAGTTA
61 TATAAACTATAGTTA
*
1265996 ATATTTACATATAAACTATAGTTTACATATGAACTATATATATAAACTATATAGTTTACATAT
1 ATATTTACATATAAACTATAGTTTACATATAAACTATATATATAAACTATATAGTTTACATAT
1266059 GACCTATATA
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
75 14 0.24
76 1 0.02
77 7 0.12
80 37 0.63
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (75 bp):
ATATTTACATATAAACTATAGTTTACATATAAACTATATATATAAACTATATAGTTTACATATAA
ACTATAGTTA
Found at i:1266039 original size:31 final size:31
Alignment explanation
Indices: 1266004--1266082 Score: 122
Period size: 33 Copynumber: 2.5 Consensus size: 31
1265994 TAATATTTAC
1266004 ATATAAACTATAGTTTACATATGAACTATAT
1 ATATAAACTATAGTTTACATATGAACTATAT
*
1266035 ATATAAACTATATAGTTTACATATGACCTATAT
1 ATATAAAC--TATAGTTTACATATGAACTATAT
*
1266068 ATATATACTATAGTT
1 ATATAAACTATAGTT
1266083 GATATTTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
31 15 0.34
33 29 0.66
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (31 bp):
ATATAAACTATAGTTTACATATGAACTATAT
Found at i:1266107 original size:53 final size:53
Alignment explanation
Indices: 1266031--1266181 Score: 223
Period size: 53 Copynumber: 2.8 Consensus size: 53
1266021 CATATGAACT
* *
1266031 ATATATATAAACTATATAGTTTACATATGACCTATATATATATACTATAGTTG
1 ATATTTATATACTATATAGTTTACATATGACCTATATATATATACTATAGTTG
*
1266084 ATATTTATATACTATATAGTTTACATATGACCTATATATATATACTATAGTTT
1 ATATTTATATACTATATAGTTTACATATGACCTATATATATATACTATAGTTG
* * *
1266137 ATATTTATATACTATATA-TTATATATATAAACTATATATACTATA
1 ATATTTATATACTATATAGTT-TACATATGACCTATATATA-TATA
1266182 TAGTATAATT
Statistics
Matches: 90, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
52 2 0.02
53 84 0.93
54 4 0.04
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.45
Consensus pattern (53 bp):
ATATTTATATACTATATAGTTTACATATGACCTATATATATATACTATAGTTG
Found at i:1266123 original size:2 final size:2
Alignment explanation
Indices: 1266116--1266188 Score: 58
Period size: 2 Copynumber: 34.0 Consensus size: 2
1266106 ACATATGACC
* *
1266116 TA TA TA TA TA TA CTA TA GTT TA TA TT TA TA TA CTA TA TA T- TA
1 TA TA TA TA TA TA -TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA
*
1266158 TA TA TA TA AA CTA TA TA TA CTA TA TA GTA TA
1 TA TA TA TA TA -TA TA TA TA -TA TA TA -TA TA
1266189 ATTTACATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
1 1 0.02
2 47 0.81
3 10 0.17
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:1266139 original size:20 final size:20
Alignment explanation
Indices: 1266116--1266188 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
1266106 ACATATGACC
1266116 TATATATATATACTATAGT-T
1 TATATATATATACTATA-TAT
*
1266136 TATATTTATATACTATATAT
1 TATATATATATACTATATAT
*
1266156 TATATATATAAACTATATA-
1 TATATATATATACTATATAT
1266175 TACTATATAGTATA
1 TA-TATATA-TATA
1266189 ATTTACATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
19 3 0.07
20 40 0.87
21 3 0.07
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (20 bp):
TATATATATATACTATATAT
Found at i:1266173 original size:33 final size:33
Alignment explanation
Indices: 1266136--1266486 Score: 89
Period size: 33 Copynumber: 10.4 Consensus size: 33
1266126 TACTATAGTT
*
1266136 TATATTTATATACTATATATTATATATATAAAC
1 TATATATATATACTATATATTATATATATAAAC
* *
1266169 TATATATACTATA-TAGTATAATT-TACATATGAAC
1 TATATATA-TATACTA-TAT-ATTATATATATAAAC
** **
1266203 TATATATA-A-A--A-ATCCTA-A-ACCCTAAAC
1 TATATATATATACTATATATTATATA-TATAAAC
* * *
1266230 TATACAT-TACA-TAGTTTATTAGTATATATAAAC
1 TATATATATATACTA-TATATTA-TATATATAAAC
* * **
1266263 TATATAACATATATTGACTATATGGTATATATAAAC
1 TATAT-ATATATACT-A-TATATTATATATATAAAC
*
1266299 TATACAT-TATA-TATAGTTCATTAGTATATATAAAC
1 TATATATATATACTATA--T-ATTA-TATATATAAAC
1266334 TATATAT-TATA-TAGT-TCATTAGTATATATAAAC
1 TATATATATATACTA-TAT-ATTA-TATATATAAAC
* *
1266367 TATATAGTATATATAAACTATATATTATAGT-TCAT-TAG
1 --TATA-TATATAT--ACTATATATTATA-TAT-ATAAAC
** *
1266405 TATATATAACCTATA-TAGTATATGGTATATACAAAC
1 TATATAT-A--TATACTA-TATATTATATATATAAAC
1266441 TATATAT-TATA-TAGT-TCATTAGTATATATAAAC
1 TATATATATATACTA-TAT-ATTA-TATATATAAAC
1266474 TATATAGTATATA
1 TATATA-TATATA
1266487 TAAACTATAT
Statistics
Matches: 240, Mismatches: 36, Indels: 82
0.67 0.10 0.23
Matches are distributed among these distances:
26 1 0.00
27 13 0.05
28 3 0.01
29 1 0.00
30 1 0.00
31 7 0.03
32 12 0.05
33 55 0.23
34 33 0.14
35 45 0.19
36 42 0.17
37 8 0.03
38 7 0.03
39 9 0.04
40 3 0.01
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.42
Consensus pattern (33 bp):
TATATATATATACTATATATTATATATATAAAC
Found at i:1266205 original size:34 final size:36
Alignment explanation
Indices: 1266142--1266210 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 36
1266132 AGTTTATATT
*
1266142 TATATACTATATATTATATATATAAACTATATATAC
1 TATATACTATATATTATACATATAAACTATATATAC
* *
1266178 TATATAGTATA-ATT-TACATATGAACTATATATA
1 TATATACTATATATTATACATATAAACTATATATA
1266211 AAAATCCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 17 0.57
35 3 0.10
36 10 0.33
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.43
Consensus pattern (36 bp):
TATATACTATATATTATACATATAAACTATATATAC
Found at i:1266309 original size:18 final size:18
Alignment explanation
Indices: 1266249--1266497 Score: 155
Period size: 18 Copynumber: 14.1 Consensus size: 18
1266239 CATAGTTTAT
1266249 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
** **
1266267 TAACATATATTGACTATA
1 TAGTATATATAAACTATA
*
1266285 TGGTATATATAAACTATA
1 TAGTATATATAAACTATA
* * **
1266303 CATTATATAT-AGTTCAT-
1 TAGTATATATAAACT-ATA
1266320 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
**
1266338 TA-T-TATAT-AGTTCAT-
1 TAGTATATATAAACT-ATA
1266353 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
1266371 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
** *
1266389 TA-T-TATAGTTCATTAGTA
1 TAGTATATA-TAAACTA-TA
* *
1266407 TA-TATAACCTATATAGTATA
1 TAGTAT-A--TATAAACTATA
* *
1266427 TGGTATATACAAACTATA
1 TAGTATATATAAACTATA
**
1266445 TA-T-TATAT-AGTTCAT-
1 TAGTATATATAAACT-ATA
1266460 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
1266478 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
1266496 TA
1 TA
1266498 TTAATTTATT
Statistics
Matches: 173, Mismatches: 38, Indels: 40
0.69 0.15 0.16
Matches are distributed among these distances:
15 8 0.05
16 19 0.11
17 33 0.19
18 98 0.57
19 1 0.01
20 5 0.03
21 7 0.04
22 2 0.01
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (18 bp):
TAGTATATATAAACTATA
Found at i:1266328 original size:17 final size:17
Alignment explanation
Indices: 1266306--1266363 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
1266296 AACTATACAT
1266306 TATATATAGTTCATTAG
1 TATATATAGTTCATTAG
**
1266323 TATATATA-AAC-TATA-
1 TATATATAGTTCAT-TAG
1266338 TATTATATAGTTCATTAG
1 TA-TATATAGTTCATTAG
1266356 TATATATA
1 TATATATA
1266364 AACTATATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
15 3 0.09
16 9 0.28
17 17 0.53
18 3 0.09
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.47
Consensus pattern (17 bp):
TATATATAGTTCATTAG
Found at i:1266375 original size:51 final size:51
Alignment explanation
Indices: 1266320--1266500 Score: 276
Period size: 51 Copynumber: 3.5 Consensus size: 51
1266310 TATAGTTCAT
1266320 TAGTATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTATA
1 TAGTATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTATA
*
1266371 TAGTATATATAAACTATATA-T-TATAGTTCATTAGTATATATAACCTATA
1 TAGTATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTATA
1266420 TAGTATATGGTATATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATA
1 TAG--TA---TATAT--AAACTATATATTATATAGTTCATTAGTATATATAAACTATA
1266478 TAGTATATATAAACTATATATTA
1 TAGTATATATAAACTATATATTA
1266501 ATTTATTAAT
Statistics
Matches: 119, Mismatches: 2, Indels: 18
0.86 0.01 0.13
Matches are distributed among these distances:
49 30 0.25
50 1 0.01
51 35 0.29
53 5 0.04
54 5 0.04
56 12 0.10
57 1 0.01
58 30 0.25
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.43
Consensus pattern (51 bp):
TAGTATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTATA
Found at i:1266446 original size:56 final size:58
Alignment explanation
Indices: 1266367--1266486 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 58
1266357 ATATATAAAC
* *
1266367 TATATAGTATATATAAACTATATA-T-TATAGTTCATTAGTATATATAACCTATATAG
1 TATATAGTATATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAG
*
1266423 TATATGGTATATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAG
1 TATATAGTATATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAG
1266481 TATATA
1 TATATA
1266487 TAAACTATAT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
56 22 0.38
57 1 0.02
58 35 0.60
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.42
Consensus pattern (58 bp):
TATATAGTATATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAG
Found at i:1266521 original size:51 final size:51
Alignment explanation
Indices: 1266320--1266521 Score: 196
Period size: 51 Copynumber: 3.9 Consensus size: 51
1266310 TATAGTTCAT
* * *
1266320 TAGTATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTATA
1 TAGTATATATAAACTATATATTATATAGTTAATTAGAACATATAAACTATA
* * * *
1266371 TAGTATATATAAACTATATA-T-TATAGTTCATTAGTATATATAACCTATA
1 TAGTATATATAAACTATATATTATATAGTTAATTAGAACATATAAACTATA
* * *
1266420 TAGTATATGGTATATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATA
1 TAG--TA---TATAT--AAACTATATATTATATAGTTAATTAGAACATATAAACTATA
*
1266478 TAGTATATATAAACTATATATTAATTTA-TTAATATA-AACATATA
1 TAGTATATATAAACTATATATT-ATATAGTTAAT-TAGAACATATA
1266522 TATTAATTGA
Statistics
Matches: 134, Mismatches: 6, Indels: 22
0.83 0.04 0.14
Matches are distributed among these distances:
49 30 0.22
50 1 0.01
51 44 0.33
52 6 0.04
53 5 0.04
54 5 0.04
56 12 0.09
57 1 0.01
58 30 0.22
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (51 bp):
TAGTATATATAAACTATATATTATATAGTTAATTAGAACATATAAACTATA
Found at i:1268658 original size:16 final size:16
Alignment explanation
Indices: 1268637--1268671 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
1268627 TTGAATTTCC
*
1268637 TTTTTGTTATTGCTTG
1 TTTTTGATATTGCTTG
1268653 TTTTTGATATTGCTTG
1 TTTTTGATATTGCTTG
1268669 TTT
1 TTT
1268672 CTACTTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.06, G:0.17, T:0.69
Consensus pattern (16 bp):
TTTTTGATATTGCTTG
Found at i:1268836 original size:26 final size:26
Alignment explanation
Indices: 1268800--1268878 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
1268790 TCGATGCAAC
1268800 GATGCTTGCTGAATTGGTACATTGAT
1 GATGCTTGCTGAATTGGTACATTGAT
1268826 GATGCTTGCTGAATTGGTACATTGAT
1 GATGCTTGCTGAATTGGTACATTGAT
*
1268852 GATGCTTGTTGAATTGGTACATTGAT
1 GATGCTTGCTGAATTGGTACATTGAT
1268878 G
1 G
1268879 CTTGTCGGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (26 bp):
GATGCTTGCTGAATTGGTACATTGAT
Found at i:1269618 original size:51 final size:52
Alignment explanation
Indices: 1269533--1269630 Score: 171
Period size: 51 Copynumber: 1.9 Consensus size: 52
1269523 ATATAAAATT
* *
1269533 AAATTTCAAAAAAGTAATCATATTATTTTGATTATCATAATAATTTATGATA
1 AAATTTCAAAAAAGTAATCATATTAATTTAATTATCATAATAATTTATGATA
1269585 AAATTTC-AAAAAGTAATCATATTAATTTAATTATCATAATAATTTA
1 AAATTTCAAAAAAGTAATCATATTAATTTAATTATCATAATAATTTA
1269631 ATTATCATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 37 0.84
52 7 0.16
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (52 bp):
AAATTTCAAAAAAGTAATCATATTAATTTAATTATCATAATAATTTATGATA
Found at i:1269622 original size:17 final size:17
Alignment explanation
Indices: 1269600--1269640 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
1269590 TCAAAAAGTA
*
1269600 ATCATATTAATTTAATT
1 ATCATAATAATTTAATT
1269617 ATCATAATAATTTAATT
1 ATCATAATAATTTAATT
1269634 ATCATAA
1 ATCATAA
1269641 GTTTATTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (17 bp):
ATCATAATAATTTAATT
Found at i:1270788 original size:23 final size:24
Alignment explanation
Indices: 1270738--1270788 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
1270728 TTATAGTTCT
***
1270738 TAAAAGTATATTAATTATTGTTAA
1 TAAAAGTATATTAATTATAAATAA
1270762 -AAAAGTATATTAATTA-AAATAA
1 TAAAAGTATATTAATTATAAATAA
1270784 TAAAA
1 TAAAA
1270789 AAACACAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (24 bp):
TAAAAGTATATTAATTATAAATAA
Found at i:1274112 original size:2 final size:2
Alignment explanation
Indices: 1274105--1274131 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1274095 ATTTGTAGTC
1274105 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1274132 ATTAGAAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1277714 original size:16 final size:17
Alignment explanation
Indices: 1277681--1277714 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1277671 CGATAAATGA
1277681 GTAAAAGTGATTTTGAAT
1 GTAAAAGTGA-TTTGAAT
1277699 GTAAAAGTGA-TTGAAT
1 GTAAAAGTGATTTGAAT
1277715 AATTTATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
18 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (17 bp):
GTAAAAGTGATTTGAAT
Found at i:1278181 original size:20 final size:20
Alignment explanation
Indices: 1278158--1278195 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1278148 AAAGTTAAAC
1278158 TTTAATAAAAATACTAAATT
1 TTTAATAAAAATACTAAATT
* *
1278178 TTTAATACAAATATTAAA
1 TTTAATAAAAATACTAAA
1278196 AATTTACTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
TTTAATAAAAATACTAAATT
Found at i:1278201 original size:20 final size:20
Alignment explanation
Indices: 1278158--1278201 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
1278148 AAAGTTAAAC
**
1278158 TTTAATAAAAATACTAAATT
1 TTTAATAAAAATACTAAAAA
* *
1278178 TTTAATACAAATATTAAAAA
1 TTTAATAAAAATACTAAAAA
1278198 TTTA
1 TTTA
1278202 CTTAAGTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTAATAAAAATACTAAAAA
Found at i:1281247 original size:32 final size:32
Alignment explanation
Indices: 1281211--1281277 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
1281201 ACAATAAGCC
1281211 ATAAGGAATGAGAAGTTTTATTTATACTAAGG
1 ATAAGGAATGAGAAGTTTTATTTATACTAAGG
1281243 ATAAGGAATGAGAAGTTTTATTTATACTAAGG
1 ATAAGGAATGAGAAGTTTTATTTATACTAAGG
1281275 ATA
1 ATA
1281278 TTAACATCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.42, C:0.03, G:0.21, T:0.34
Consensus pattern (32 bp):
ATAAGGAATGAGAAGTTTTATTTATACTAAGG
Found at i:1285067 original size:17 final size:17
Alignment explanation
Indices: 1285045--1285081 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
1285035 TTTTATCCCA
1285045 ACTATCATTTATATTTT
1 ACTATCATTTATATTTT
*
1285062 ACTATCATTTATGTTTT
1 ACTATCATTTATATTTT
1285079 ACT
1 ACT
1285082 TTGGTCACCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.27, C:0.14, G:0.03, T:0.57
Consensus pattern (17 bp):
ACTATCATTTATATTTT
Found at i:1285803 original size:22 final size:22
Alignment explanation
Indices: 1285750--1285803 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
1285740 AAAATATATT
*
1285750 AAATTTATAAATAGGATTTTTA
1 AAATTTATAAATAGGATTTATA
* *
1285772 AAATTAATAAATA-TATTTATA
1 AAATTTATAAATAGGATTTATA
*
1285793 TATATTTATAA
1 -AAATTTATAA
1285804 GACTTAGATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (22 bp):
AAATTTATAAATAGGATTTATA
Found at i:1287414 original size:3 final size:3
Alignment explanation
Indices: 1287406--1287449 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
1287396 ATTAATTAAT
*
1287406 TAA TAA TAA T-A TAA T-A TAA TAA TAA -AA CAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1287450 ATAAAACAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 8 0.22
3 29 0.78
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:1287427 original size:16 final size:16
Alignment explanation
Indices: 1287398--1287452 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
1287388 TAAAATTAAT
1287398 TAAT-TAAT-TAATAA
1 TAATATAATATAATAA
1287412 TAATATAATATAATAA
1 TAATATAATATAATAA
* * *
1287428 TAAAACAAAATAATAA
1 TAATATAATATAATAA
1287444 TAATA-AATA
1 TAATATAATA
1287453 AAACAAATGA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 4 0.12
15 7 0.21
16 23 0.68
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
TAATATAATATAATAA
Found at i:1287999 original size:122 final size:125
Alignment explanation
Indices: 1287710--1288010 Score: 441
Period size: 126 Copynumber: 2.4 Consensus size: 125
1287700 TCTTTATGAA
* *
1287710 CTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TCCTTCTGGAAATA-CTGATGATGATA
1 CTTCTTCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTC-TCTGGAAA-AGCTGATGATGATA
* * *
1287773 TATGTCCTTCTGTGATAGAGTTATGCAAAAGGTTGAACAAGTTCTTCTCATTATAAACTTTCT
64 TATCTCCTTCTGTGATAGAGTTATACAAAAGGTTGAACAAGCTCTTCTCATTATAAAC-TTCT
* * * *
1287836 CTTCTTCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGGTGTTGATCTA
1 CTTCTTCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATGATGATATA
* *
1287901 TCTCTTTCTGTGATAGAGTTATAC-AAAGGTTGAACAAGCTCTTCTCATTATGAAC-T-T
66 TCTCCTTCTGTGATAGAGTTATACAAAAGGTTGAACAAGCTCTTCTCATTATAAACTTCT
1287958 CTTCTTCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCT
1 CTTCTTCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCT
1288011 AATCCATCGA
Statistics
Matches: 161, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
122 53 0.33
123 1 0.01
125 30 0.19
126 75 0.47
127 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.42
Consensus pattern (125 bp):
CTTCTTCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATGATGATATA
TCTCCTTCTGTGATAGAGTTATACAAAAGGTTGAACAAGCTCTTCTCATTATAAACTTCT
Found at i:1288249 original size:225 final size:228
Alignment explanation
Indices: 1287940--1288457 Score: 710
Period size: 225 Copynumber: 2.3 Consensus size: 228
1287930 TTGAACAAGC
* *
1287940 TCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATAAGTTCTTCTCATTATGAACT-TTCTCTG
1 TCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACTCTG
* * * *
1288003 GAAAAGCTAATCCATCGAGTGATGAATTAAAGCGAAATGTTGAACAAATTCTTCTTATTATGAAA
66 GAAAAGCTAATCCACCGAGTGATGAATTAAAGCAAAAGGTTGAACAAATTCTTCTAATTATGAAA
* *
1288068 TTCTTCTTCCTTCTTCATATAAGTTCTTCTCATTATGAACTCTAACT-GCAATGA-TAATCCATC
131 TTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTAACTGGAAAT-ATTAATCCATC
*
1288131 GAGTGATGAATTAAAAC-AAAAGGTTAAAAAAAT
195 GAATGATGAATTAAAACGAAAAGGTTAAAAAAAT
*
1288164 TCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTAC-CTG
1 TCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACTCTG
* ** * ** * *
1288228 GCATTGCTCATCCACCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTAATTATGAAC
66 GAAAAGCTAATCCACCGAGTGATGAATTAAAGCAAAAGGTTGAACAAATTCTTCTAATTATGAAA
* * *
1288293 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATATTGATCCATCG
131 TTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTAACTGGAAATATTAATCCATCG
* * * * * *
1288358 AATGATGAATTTAAGCGAAAAGTTTGAACAAGT
196 AATGATGAATTAAAACGAAAAGGTTAAAAAAAT
* *
1288391 TCTTCTAATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCT--TCTG
1 TCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACTCTG
1288454 GAAA
66 GAAA
1288458 TGTTTTAAAA
Statistics
Matches: 257, Mismatches: 31, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
224 23 0.09
225 133 0.52
226 33 0.13
227 68 0.26
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (228 bp):
TCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACTCTG
GAAAAGCTAATCCACCGAGTGATGAATTAAAGCAAAAGGTTGAACAAATTCTTCTAATTATGAAA
TTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTAACTGGAAATATTAATCCATCG
AATGATGAATTAAAACGAAAAGGTTAAAAAAAT
Found at i:1288292 original size:113 final size:113
Alignment explanation
Indices: 1287925--1288459 Score: 718
Period size: 113 Copynumber: 4.8 Consensus size: 113
1287915 AGAGTTATAC
* *
1287925 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATAAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATT
* * *
1287989 ATGAACT-TTCTCTGGAAAAGCTAATCCATCGAGTGATGAATTAAAGCG
66 ATGAACTCTAC-CTGGAAATGCTAATCCATCGAGTGATGAATTAAAGCA
* * * * *
1288037 AAATGTTGAACAAATTCTTCTTATTATGAAATTCTTCTTCCTTCTTCATATAAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATT
* * * *
1288102 ATGAACTCTAACT-GCAATGATAATCCATCGAGTGATGAATTAAAACA
66 ATGAACTCTACCTGGAAATGCTAATCCATCGAGTGATGAATTAAAGCA
* * * *
1288149 AAAGGTTAAAAAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATT
* * * * **
1288214 ATGAACTCTACCTGGCATTGCTCATCCACCGAGTGATGAATTCGAGCA
66 ATGAACTCTACCTGGAAATGCTAATCCATCGAGTGATGAATTAAAGCA
*
1288262 AAAGGTTGAACAAGTTCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATT
** * * *
1288327 ATGAACTCTACCTGGAAATATTGATCCATCGAATGATGAATTTAAGCGA
66 ATGAACTCTACCTGGAAATGCTAATCCATCGAGTGATGAATTAAAGC-A
* * *
1288376 AAAGTTTGAACAAGTTCTTCTAATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATT
*
1288441 ATGAACTCT-TCTGGAAATG
66 ATGAACTCTACCTGGAAATG
1288460 TTTTAAAAAA
Statistics
Matches: 375, Mismatches: 44, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
112 135 0.36
113 166 0.44
114 74 0.20
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (113 bp):
AAAGGTTGAACAAGTTCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATT
ATGAACTCTACCTGGAAATGCTAATCCATCGAGTGATGAATTAAAGCA
Found at i:1288598 original size:76 final size:76
Alignment explanation
Indices: 1288481--1288725 Score: 409
Period size: 76 Copynumber: 3.2 Consensus size: 76
1288471 CATTCCGCAT
* * * * *
1288481 TGTAGGGCTTACAGCTGACTCGAAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAA
1 TGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAA
1288546 ACATCATGCAC
66 ACATCATGCAC
* *
1288557 TGTAGGACTTATAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGACTTTTTGGAA
1 TGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAA
1288622 ACATCATGCAC
66 ACATCATGCAC
*
1288633 TGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGAAGGCTTTTTGGAA
1 TGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAA
1288698 ACATCATGCAC
66 ACATCATGCAC
*
1288709 TGTATGACTTACAGATG
1 TGTAGGACTTACAGATG
1288726 TGGGAAATAG
Statistics
Matches: 158, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 158 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (76 bp):
TGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAA
ACATCATGCAC
Found at i:1289452 original size:22 final size:22
Alignment explanation
Indices: 1289401--1289452 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
1289391 AATAAAGCTT
**
1289401 TCATCTTCGAAAAGAGAATCTA
1 TCATCTTTAAAAAGAGAATCTA
*
1289423 TCATCTTTAAAAAGAGAATTTA
1 TCATCTTTAAAAAGAGAATCTA
1289445 TCATCTTT
1 TCATCTTT
1289453 GAAGAATGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (22 bp):
TCATCTTTAAAAAGAGAATCTA
Found at i:1291012 original size:36 final size:34
Alignment explanation
Indices: 1290955--1291021 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 34
1290945 TCTTGTTGAG
*
1290955 ATGAGCCTCCAAGAATGCCCAAATATTCATATTATT
1 ATGAGCCTCCAAGAAT-CCCCAATATTC-TATTATT
*
1290991 ATGAGCCTTCAA-AATACCCCAATATTCTATT
1 ATGAGCCTCCAAGAAT-CCCCAATATTCTATT
1291022 TCTGGTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 4 0.14
35 13 0.46
36 11 0.39
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (34 bp):
ATGAGCCTCCAAGAATCCCCAATATTCTATTATT
Found at i:1294328 original size:25 final size:23
Alignment explanation
Indices: 1294306--1294373 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 23
1294296 TTAATTTTCC
1294306 TTTTTTTTTCTTTTTTTCCTTTT
1 TTTTTTTTTCTTTTTTTCCTTTT
* *
1294329 TGTTTTTTT-TATTTTTCCTTTAT
1 TTTTTTTTTCTTTTTTTCCTTT-T
1294352 TTTTCCTTTTTC-TTTTTTCCTT
1 TTTT--TTTTTCTTTTTTTCCTT
1294374 CTTCTTTCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
22 11 0.30
23 12 0.32
25 14 0.38
ACGTcount: A:0.03, C:0.15, G:0.01, T:0.81
Consensus pattern (23 bp):
TTTTTTTTTCTTTTTTTCCTTTT
Found at i:1294370 original size:14 final size:14
Alignment explanation
Indices: 1294310--1294380 Score: 52
Period size: 15 Copynumber: 4.6 Consensus size: 14
1294300 TTTTCCTTTT
1294310 TTTTTCTTTTTTTCC
1 TTTTTC-TTTTTTCC
* **
1294325 TTTTTGTTTTTTTTA
1 TTTTT-CTTTTTTCC
1294340 TTTTTCCTTTATTTTTCC
1 TTTTT-C--T-TTTTTCC
1294358 TTTTTCTTTTTTCC
1 TTTTTCTTTTTTCC
*
1294372 TTCTTCTTT
1 TTTTTCTTT
1294381 CTTTGTTGGA
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
14 15 0.34
15 17 0.39
17 2 0.05
18 10 0.23
ACGTcount: A:0.03, C:0.17, G:0.01, T:0.79
Consensus pattern (14 bp):
TTTTTCTTTTTTCC
Found at i:1294685 original size:2 final size:2
Alignment explanation
Indices: 1294678--1294709 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
1294668 ACAACAAAGG
*
1294678 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1294710 TAAAGGATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1296361 original size:27 final size:27
Alignment explanation
Indices: 1296331--1296386 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
1296321 GTAATTATGT
1296331 AAAAATGAAAATGTAAATACAAACGTA
1 AAAAATGAAAATGTAAATACAAACGTA
* * *
1296358 AAAAATGCAAATGTAAATGCAAATGTA
1 AAAAATGAAAATGTAAATACAAACGTA
1296385 AA
1 AA
1296387 TATGTGAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.61, C:0.07, G:0.12, T:0.20
Consensus pattern (27 bp):
AAAAATGAAAATGTAAATACAAACGTA
Found at i:1296375 original size:12 final size:12
Alignment explanation
Indices: 1296360--1296387 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
1296350 CAAACGTAAA
1296360 AAATGCAAATGT
1 AAATGCAAATGT
1296372 AAATGCAAATGT
1 AAATGCAAATGT
1296384 AAAT
1 AAAT
1296388 ATGTGAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (12 bp):
AAATGCAAATGT
Found at i:1296480 original size:7 final size:7
Alignment explanation
Indices: 1296446--1296487 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
1296436 ATAAAAGTAT
1296446 AAATGCA
1 AAATGCA
* *
1296453 CAATGAA
1 AAATGCA
1296460 AAATGCA
1 AAATGCA
1296467 AAGATGCA
1 AA-ATGCA
1296475 AAATGC-
1 AAATGCA
1296481 AAATGCA
1 AAATGCA
1296488 TGTATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (7 bp):
AAATGCA
Found at i:1298028 original size:28 final size:26
Alignment explanation
Indices: 1297973--1298029 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 26
1297963 ACTTGAAAAT
*
1297973 AAAATAATATACATATAAATATTATG
1 AAAATAATATACATATAAAAATTATG
* *
1297999 AAAATAATAAGTATATATAAAAATTTTG
1 AAAATAAT-A-TACATATAAAAATTATG
1298027 AAA
1 AAA
1298030 GGAAAGAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 8 0.31
27 1 0.04
28 17 0.65
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (26 bp):
AAAATAATATACATATAAAAATTATG
Found at i:1298926 original size:16 final size:16
Alignment explanation
Indices: 1298905--1298946 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
1298895 GACGTAAATA
*
1298905 ATAAATA-ATACTAATG
1 ATAAATATATA-TAATC
1298921 ATAAATATATATAATC
1 ATAAATATATATAATC
1298937 ATAAATATAT
1 ATAAATATAT
1298947 GAAAGTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 21 0.88
17 3 0.12
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (16 bp):
ATAAATATATATAATC
Found at i:1300509 original size:3 final size:3
Alignment explanation
Indices: 1300501--1300544 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
1300491 ATTAATTATT
*
1300501 TAA TAA TAA T-A TAA T-A TAA TAA TAA -AA CAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1300545 ATAAAACAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 8 0.22
3 29 0.78
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:1300522 original size:16 final size:15
Alignment explanation
Indices: 1300501--1300547 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
1300491 ATTAATTATT
1300501 TAATAATAATATAATA
1 TAATAATAATA-AATA
* *
1300517 TAATAATAAAACAAAA
1 TAATAATAATA-AATA
1300533 TAATAATAATAAATA
1 TAATAATAATAAATA
1300548 AAACAAATGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 3 0.12
16 23 0.88
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (15 bp):
TAATAATAATAAATA
Found at i:1300534 original size:23 final size:23
Alignment explanation
Indices: 1300511--1300554 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
1300501 TAATAATAAT
1300511 ATAAT-ATAAT-AATAAAACAAA
1 ATAATAATAATAAATAAAACAAA
1300532 ATAATAATAATAAATAAAACAAA
1 ATAATAATAATAAATAAAACAAA
1300555 TGAAATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 5 0.24
22 5 0.24
23 11 0.52
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.23
Consensus pattern (23 bp):
ATAATAATAATAAATAAAACAAA
Found at i:1306213 original size:29 final size:29
Alignment explanation
Indices: 1306192--1306249 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
1306182 AAACTTTGAA
1306192 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
1306221 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
1306250 TGCCTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 14 0.52
31 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:1306239 original size:30 final size:30
Alignment explanation
Indices: 1306192--1306251 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
1306182 AAACTTTGAA
1306192 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
1306221 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
1306252 CCTTAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:1309482 original size:21 final size:21
Alignment explanation
Indices: 1309458--1309540 Score: 82
Period size: 20 Copynumber: 4.0 Consensus size: 21
1309448 CTAGCCGTTG
*
1309458 CAGCCTTCG-TGCATGGATGCA
1 CAGCCTT-GATGCATCGATGCA
**
1309479 CAG-CAGGATGCATCGATGCA
1 CAGCCTTGATGCATCGATGCA
1309499 CAGCCTTGATGCATCGATGCA
1 CAGCCTTGATGCATCGATGCA
***
1309520 CAG-AAGGATGCATCGATGCA
1 CAGCCTTGATGCATCGATGCA
1309540 C
1 C
1309541 TAATTGCATT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
19 1 0.02
20 30 0.58
21 21 0.40
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.19
Consensus pattern (21 bp):
CAGCCTTGATGCATCGATGCA
Found at i:1309496 original size:20 final size:20
Alignment explanation
Indices: 1309467--1309540 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
1309457 GCAGCCTTCG
*
1309467 TGCATGGATGCACAGCAGGA
1 TGCATCGATGCACAGCAGGA
**
1309487 TGCATCGATGCACAGCCTTGA
1 TGCATCGATGCACAG-CAGGA
*
1309508 TGCATCGATGCACAGAAGGA
1 TGCATCGATGCACAGCAGGA
1309528 TGCATCGATGCAC
1 TGCATCGATGCAC
1309541 TAATTGCATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 29 0.62
21 18 0.38
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.19
Consensus pattern (20 bp):
TGCATCGATGCACAGCAGGA
Found at i:1309518 original size:41 final size:41
Alignment explanation
Indices: 1309458--1309540 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
1309448 CTAGCCGTTG
* *
1309458 CAGCCTTCGTGCATGGATGCACAGCAGGATGCATCGATGCA
1 CAGCCTTCGTGCATCGATGCACAGAAGGATGCATCGATGCA
1309499 CAGCCTT-GATGCATCGATGCACAGAAGGATGCATCGATGCA
1 CAGCCTTCG-TGCATCGATGCACAGAAGGATGCATCGATGCA
1309540 C
1 C
1309541 TAATTGCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
40 1 0.03
41 38 0.97
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.19
Consensus pattern (41 bp):
CAGCCTTCGTGCATCGATGCACAGAAGGATGCATCGATGCA
Found at i:1309612 original size:22 final size:22
Alignment explanation
Indices: 1309587--1309641 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
1309577 TATGGTATAT
1309587 ATCGATGCACTAGTGCAGGTGC
1 ATCGATGCACTAGTGCAGGTGC
1309609 ATCGATGCACTAGTGCAGGTGC
1 ATCGATGCACTAGTGCAGGTGC
*
1309631 ATGGATGCACT
1 ATCGATGCACT
1309642 GCAGGGATGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (22 bp):
ATCGATGCACTAGTGCAGGTGC
Found at i:1309763 original size:29 final size:29
Alignment explanation
Indices: 1309742--1309799 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
1309732 AAACTTTGAA
1309742 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
1309771 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
1309800 TGCCTTACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 14 0.52
31 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:1309789 original size:30 final size:30
Alignment explanation
Indices: 1309742--1309801 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
1309732 AAACTTTGAA
1309742 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
1309771 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
1309802 CCTTACATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:1317296 original size:21 final size:21
Alignment explanation
Indices: 1317264--1317313 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
1317254 ATTATTCAAC
*
1317264 TTAAAA-TAT-AAATATAAATT
1 TTAAAATTATAAAAT-TAAAAT
1317284 TTAAAATTATAAAATTAAAAT
1 TTAAAATTATAAAATTAAAAT
*
1317305 ATAAAATTA
1 TTAAAATTA
1317314 AAGTTAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 16 0.62
22 4 0.15
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TTAAAATTATAAAATTAAAAT
Found at i:1317310 original size:13 final size:13
Alignment explanation
Indices: 1317273--1317315 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
1317263 CTTAAAATAT
*
1317273 AAATATAAATTTTA
1 AAATATAAA-ATTA
1317287 AAATTATAAAATTA
1 AAA-TATAAAATTA
1317301 AAATATAAAATTA
1 AAATATAAAATTA
1317314 AA
1 AA
1317316 GTTAAACTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 12 0.44
14 9 0.33
15 6 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AAATATAAAATTA
Found at i:1327267 original size:12 final size:12
Alignment explanation
Indices: 1327242--1327293 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
1327232 GGAAAGAAAA
*
1327242 AAAAT-AAAGGT
1 AAAATAAAAGAT
*
1327253 ATAATAAAAGAT
1 AAAATAAAAGAT
*
1327265 ATAAT-AAA-AT
1 AAAATAAAAGAT
1327275 AAAATAAAAGAT
1 AAAATAAAAGAT
1327287 AAAATAA
1 AAAATAA
1327294 TAAAATAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 6 0.17
11 10 0.29
12 19 0.54
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (12 bp):
AAAATAAAAGAT
Found at i:1327276 original size:20 final size:21
Alignment explanation
Indices: 1327253--1327303 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
1327243 AAATAAAGGT
1327253 ATAATAAAAGAT-ATAATAAA
1 ATAATAAAAGATAATAATAAA
1327273 ATAAAATAAAAGATAAAATAATAAA
1 AT--AATAAAAGAT--AATAATAAA
1327298 ATAATA
1 ATAATA
1327304 GTAGTAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 2 0.08
22 10 0.38
23 4 0.15
25 10 0.38
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (21 bp):
ATAATAAAAGATAATAATAAA
Found at i:1327283 original size:22 final size:20
Alignment explanation
Indices: 1327255--1327301 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 20
1327245 ATAAAGGTAT
1327255 AATAAAAGATATAATAAAATAA
1 AATAAAAGATA-AA-AAAATAA
*
1327277 AATAAAAGATAAAATAATAA
1 AATAAAAGATAAAAAAATAA
1327297 AATAA
1 AATAA
1327302 TAGTAGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 11 0.46
21 2 0.08
22 11 0.46
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.21
Consensus pattern (20 bp):
AATAAAAGATAAAAAAATAA
Found at i:1327363 original size:18 final size:18
Alignment explanation
Indices: 1327342--1327384 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
1327332 GTTGTTTTTA
*
1327342 AAATAAAAGATAAGAATT
1 AAATAAAAGAAAAGAATT
*
1327360 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAAGAATT
1327378 AAATAAA
1 AAATAAA
1327385 TAATCTAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (18 bp):
AAATAAAAGAAAAGAATT
Found at i:1327755 original size:12 final size:12
Alignment explanation
Indices: 1327734--1327768 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
1327724 AGAAGTGTGC
1327734 GAAAAATAGAGA
1 GAAAAATAGAGA
*
1327746 GAAAACTAGAGA
1 GAAAAATAGAGA
1327758 GAAAAAT-GAGA
1 GAAAAATAGAGA
1327769 TTTTATTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.63, C:0.03, G:0.26, T:0.09
Consensus pattern (12 bp):
GAAAAATAGAGA
Found at i:1328880 original size:200 final size:200
Alignment explanation
Indices: 1328236--1329007 Score: 947
Period size: 200 Copynumber: 3.9 Consensus size: 200
1328226 AAGGTGACTT
* * * * * * ** ** *
1328236 CTTGTTGCCAAATCGTAGTCAACCTTGGTCTTATTTTCGGTTTAAAGACCTTGGTTTGAAAATTC
1 CTTGTTGCTAAATCGCAGCCAACCTAGGTCTTCTTCTCGACTTAAAGACCTCAGTTT-AAACTTC
* * * *
1328301 AACCGGAAAGTAGTTCCTCGATGCTACCATATAGTTGATATGCCCTCGAGATGAATGGAATCGAA
65 AACCGGAAAGTAGTTCCTCGTTGCTACCATACAGTTGATATGCCTTCGAGCTGAATGGAATCGAA
* * *
1328366 CTCGAAGGTTTTTTTGACAGAT-GTCTCTTT-T-GTCTTGAGCTATGCTATAAATTCGGCTGGGA
130 CTCGAAAGTTTTGTTGACAGATAG-C-CTTTCTCGCCTTGAGCTATGCTATAAATTCGGCTGGGA
*
1328428 GGTAGTTC
193 GATAGTTC
* * * * * * *
1328436 CTTGTTGCTAAATCACAACTAACTTATGTCTTCTTCTTGACTTAAAGACCTCAGTTTAAACTTTA
1 CTTGTTGCTAAATCGCAGCCAACCTAGGTCTTCTTCTCGACTTAAAGACCTCAGTTTAAACTTCA
* *
1328501 ACCGGAAAGTAGTTCCTCGTTGCTACCATGCAGTTGATATTCCTTCGAGCTGAAT-G----GAA-
66 ACCGGAAAGTAGTTCCTCGTTGCTACCATACAGTTGATATGCCTTCGAGCTGAATGGAATCGAAC
* * * * *
1328560 TC-AAA--TTTGTTGACAGGTAGCCTTTCTCGCCTTGAGTTATGTTATAAATTTGGCTTGGAGAT
131 TCGAAAGTTTTGTTGACAGATAGCCTTTCTCGCCTTGAGCTATGCTATAAATTCGGCTGGGAGAT
*
1328622 AGTTT
196 AGTTC
*
1328627 CTTGTTGCTAAATCGCAGCCAACCTAGGTCTTCTTCTCGACTTAAAGACCTCAGTTTAAACTTTA
1 CTTGTTGCTAAATCGCAGCCAACCTAGGTCTTCTTCTCGACTTAAAGACCTCAGTTTAAACTTCA
* * * * * *
1328692 ACCAGAAAGTAGTTCCTTGTTGCTACCATGCGGTTGATATGCCTTCGAGCTAAATGGAATCAAAC
66 ACCGGAAAGTAGTTCCTCGTTGCTACCATACAGTTGATATGCCTTCGAGCTGAATGGAATCGAAC
* * * *
1328757 TCGAAAGTTTTGTTGATAGATAGCCTTTTTCGCCTTGAGCTATGTTGTAAATTCGGCTGGGAGAT
131 TCGAAAGTTTTGTTGACAGATAGCCTTTCTCGCCTTGAGCTATGCTATAAATTCGGCTGGGAGAT
1328822 AGTTC
196 AGTTC
* * *
1328827 CTTGTTGCTAAATCGTAGCCAACCTAGGTCTTCTTTTTGACTTAAAGACCTCAGTTTAAACTTCA
1 CTTGTTGCTAAATCGCAGCCAACCTAGGTCTTCTTCTCGACTTAAAGACCTCAGTTTAAACTTCA
* * * *
1328892 ACCGGAAAGTAGTTCATCGTTTCTACCATATAGTTGATATGCTTTCGAGCTGAATGGAATCGAAC
66 ACCGGAAAGTAGTTCCTCGTTGCTACCATACAGTTGATATGCCTTCGAGCTGAATGGAATCGAAC
* *
1328957 TCGAAAGTTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGCTGTAAA
131 TCGAAAGTTTTGTTGACAGATAGCCTTTCTCGCCTTGAGCTATGCTATAAA
1329008 CAATTTATCT
Statistics
Matches: 488, Mismatches: 72, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
189 4 0.01
190 13 0.03
191 142 0.29
192 3 0.01
193 2 0.00
194 3 0.01
196 2 0.00
197 2 0.00
198 4 0.01
199 55 0.11
200 258 0.53
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (200 bp):
CTTGTTGCTAAATCGCAGCCAACCTAGGTCTTCTTCTCGACTTAAAGACCTCAGTTTAAACTTCA
ACCGGAAAGTAGTTCCTCGTTGCTACCATACAGTTGATATGCCTTCGAGCTGAATGGAATCGAAC
TCGAAAGTTTTGTTGACAGATAGCCTTTCTCGCCTTGAGCTATGCTATAAATTCGGCTGGGAGAT
AGTTC
Found at i:1329210 original size:42 final size:42
Alignment explanation
Indices: 1329161--1329299 Score: 124
Period size: 42 Copynumber: 3.3 Consensus size: 42
1329151 TTAGATGACT
1329161 CCCTTCGCGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTC
1 CCCTTCGCGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTC
* * * * **
1329203 CCCTTCGCGGGTCTGAA-CCAGGTGAG-ATGA-TCTT-TGGATGACTC
1 CCCTTCGCGGG---AAAGTCATGTG-GTAT-ATTCTTCAGG-TGGTTC
* *
1329247 ACCTTCACGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTC
1 CCCTTCGCGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTC
1329289 CCCTTCGCGGG
1 CCCTTCGCGGG
1329300 TCTGAACCAG
Statistics
Matches: 71, Mismatches: 16, Indels: 20
0.66 0.15 0.19
Matches are distributed among these distances:
41 4 0.06
42 35 0.49
43 4 0.06
44 24 0.34
45 4 0.06
ACGTcount: A:0.17, C:0.24, G:0.29, T:0.30
Consensus pattern (42 bp):
CCCTTCGCGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTC
Found at i:1329365 original size:86 final size:86
Alignment explanation
Indices: 1329070--1329354 Score: 473
Period size: 86 Copynumber: 3.3 Consensus size: 86
1329060 ATTCTTTAGT
* ** * *
1329070 TGACTCCCCTTAACGGGAAAACCAAGTGGTATATTCTTCAGGTGGTTCCCCTTCGCAGGTCTGAA
1 TGACTCCCCTTCACGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTCCCCTTCGCGGGTCTGAA
*
1329135 CCAGGTGAGATGATCTTTAGA
66 CCAGGTGAGATGATCTTTGGA
*
1329156 TGACT-CCCTTCGCGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTCCCCTTCGCGGGTCTGAA
1 TGACTCCCCTTCACGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTCCCCTTCGCGGGTCTGAA
1329220 CCAGGTGAGATGATCTTTGGA
66 CCAGGTGAGATGATCTTTGGA
*
1329241 TGACTCACCTTCACGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTCCCCTTCGCGGGTCTGAA
1 TGACTCCCCTTCACGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTCCCCTTCGCGGGTCTGAA
*
1329306 CCAGGTGAGATTATCTTTGGA
66 CCAGGTGAGATGATCTTTGGA
*
1329327 TGACTCCCCTTCACGGGATAGTCATGTG
1 TGACTCCCCTTCACGGGAAAGTCATGTG
1329355 AGATGTTCTT
Statistics
Matches: 186, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
85 78 0.42
86 108 0.58
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (86 bp):
TGACTCCCCTTCACGGGAAAGTCATGTGGTATATTCTTCAGGTGGTTCCCCTTCGCGGGTCTGAA
CCAGGTGAGATGATCTTTGGA
Found at i:1330180 original size:19 final size:20
Alignment explanation
Indices: 1330156--1330246 Score: 114
Period size: 19 Copynumber: 4.6 Consensus size: 20
1330146 AATCAGATTG
1330156 CCCAGGGGGTACAGATT-CC
1 CCCAGGGGGTACAGATTCCC
*
1330175 CCCAGGGGGAACAGATTCCC
1 CCCAGGGGGTACAGATTCCC
* *
1330195 CCCA-GGGGTACCGTTTCCC
1 CCCAGGGGGTACAGATTCCC
* *
1330214 CCCAAGGGGAACAGATTCCCC
1 CCCAGGGGGTACAGATT-CCC
1330235 CCCAGGGGGTAC
1 CCCAGGGGGTAC
1330247 CAATTCCCAC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
19 32 0.53
20 15 0.25
21 13 0.22
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (20 bp):
CCCAGGGGGTACAGATTCCC
Found at i:1330201 original size:39 final size:40
Alignment explanation
Indices: 1330156--1330254 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
1330146 AATCAGATTG
*
1330156 CCCAGGGGGTACAGATTCCCCCAGGGGGAACAGATT-CCC
1 CCCAGGGGGTACAGATTCCCCCAAGGGGAACAGATTCCCC
* *
1330195 CCCA-GGGGTACCGTTTCCCCCCAAGGGGAACAGATTCCCC
1 CCCAGGGGGTACAGATT-CCCCCAAGGGGAACAGATTCCCC
1330235 CCCAGGGGGTACCA-ATTCCC
1 CCCAGGGGGTA-CAGATTCCC
1330255 ACCTGTCTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
38 10 0.20
39 22 0.43
40 10 0.20
41 8 0.16
42 1 0.02
ACGTcount: A:0.21, C:0.37, G:0.27, T:0.14
Consensus pattern (40 bp):
CCCAGGGGGTACAGATTCCCCCAAGGGGAACAGATTCCCC
Found at i:1330216 original size:21 final size:20
Alignment explanation
Indices: 1330156--1330254 Score: 78
Period size: 20 Copynumber: 5.0 Consensus size: 20
1330146 AATCAGATTG
*
1330156 CCCAGGGGGTACAGATT--CC
1 CCCA-GGGGTACCGATTCCCC
* *
1330175 CCCAGGGGGAACAGATT-CCC
1 CCCA-GGGGTACCGATTCCCC
*
1330195 CCCAGGGGTACCGTTTCCCC
1 CCCAGGGGTACCGATTCCCC
* * *
1330215 CCAAGGGGAACAGATTCCCC
1 CCCAGGGGTACCGATTCCCC
*
1330235 CCCAGGGGGTACCAATTCCC
1 CCCA-GGGGTACCGATTCCC
1330255 ACCTGTCTAA
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
19 25 0.38
20 28 0.43
21 12 0.18
ACGTcount: A:0.21, C:0.37, G:0.27, T:0.14
Consensus pattern (20 bp):
CCCAGGGGTACCGATTCCCC
Found at i:1331559 original size:19 final size:20
Alignment explanation
Indices: 1331535--1331582 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
1331525 AATGATTTTC
*
1331535 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
1331554 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
1331574 TTTTGAAAA
1 TTTTGAAAA
1331583 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:1333019 original size:21 final size:21
Alignment explanation
Indices: 1332990--1333053 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
1332980 AATCAGATTG
*
1332990 CCCATGGGGTACAGATTCCCC
1 CCCAAGGGGTACAGATTCCCC
*
1333011 CCCAAGGGGAACAGATTCCCC
1 CCCAAGGGGTACAGATTCCCC
* * *
1333032 CCTAGGGGGTACCGATTCCCC
1 CCCAAGGGGTACAGATTCCCC
1333053 C
1 C
1333054 TGTCTAACGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.20, C:0.39, G:0.25, T:0.16
Consensus pattern (21 bp):
CCCAAGGGGTACAGATTCCCC
Found at i:1337903 original size:21 final size:21
Alignment explanation
Indices: 1337885--1337939 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
1337875 TTGTTTGAGA
1337885 GGGTATC-AGTACCTGTTGAAT
1 GGGTATCGA-TACCTGTTGAAT
1337906 GGGTATCGATACCTGTTGAAT
1 GGGTATCGATACCTGTTGAAT
*
1337927 GGGTACCGATACC
1 GGGTATCGATACC
1337940 CCTAGCCCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 31 0.97
22 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (21 bp):
GGGTATCGATACCTGTTGAAT
Found at i:1339754 original size:19 final size:19
Alignment explanation
Indices: 1339708--1339755 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
1339698 TTTGAAAAAT
*
1339708 AATTAAAGATAAATAATTAG
1 AATTAAA-ATAAATAATTAA
*
1339728 AATCAAAA-AAATAAATTAA
1 AATTAAAATAAAT-AATTAA
1339747 AATTAAAAT
1 AATTAAAAT
1339756 TTGTTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 4 0.17
19 13 0.57
20 6 0.26
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
AATTAAAATAAATAATTAA
Found at i:1340344 original size:14 final size:12
Alignment explanation
Indices: 1340288--1340388 Score: 60
Period size: 12 Copynumber: 8.0 Consensus size: 12
1340278 ATTAAATTTC
1340288 AAAAAAAA-AAA
1 AAAAAAAATAAA
* * *
1340299 TAATAAAATATA
1 AAAAAAAATAAA
**
1340311 AAAAAATTTAAA
1 AAAAAAAATAAA
* *
1340323 AGAGAAAATCAAA
1 AAAAAAAAT-AAA
1340336 ATAAAAAAATAAA
1 A-AAAAAAATAAA
*
1340349 AAAAAGAAATGAGA
1 AAAAA-AAAT-AAA
*
1340363 AAATAAAATAAA
1 AAAAAAAATAAA
1340375 ATAAATAAAATAAA
1 A-AAA-AAAATAAA
1340389 TGTTAAATTT
Statistics
Matches: 65, Mismatches: 18, Indels: 11
0.69 0.19 0.12
Matches are distributed among these distances:
11 6 0.09
12 21 0.32
13 18 0.28
14 20 0.31
ACGTcount: A:0.78, C:0.01, G:0.05, T:0.16
Consensus pattern (12 bp):
AAAAAAAATAAA
Found at i:1340349 original size:5 final size:5
Alignment explanation
Indices: 1340327--1340388 Score: 51
Period size: 5 Copynumber: 12.6 Consensus size: 5
1340317 TTTAAAAGAG
* *
1340327 AAAAT CAAAAT -AAA- AAAAT AAAA- AAAAG AAATGAG AAAAT AAAAT
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAA--AT AAAAT AAAAT
1340372 AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAA
1340389 TGTTAAATTT
Statistics
Matches: 49, Mismatches: 1, Indels: 13
0.78 0.02 0.21
Matches are distributed among these distances:
4 14 0.29
5 25 0.51
6 5 0.10
7 5 0.10
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.15
Consensus pattern (5 bp):
AAAAT
Done.