genome.fa.s5201.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005201.1 Hibiscus syriacus cultivar Beakdansim tig00011754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64473

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1845--1877	13	2.6	13	95	4	59	12	0	0	87	0.53
1845--1877	7	5.0	7	89	10	52	12	0	0	87	0.53
9067--9101	14	2.4	15	85	9	54	65	0	5	28	1.15
9457--9556	37	2.8	36	84	4	121	30	15	14	41	1.86
10098--10722	104	6.0	105	88	4	860	22	17	26	33	1.96
10099--10717	209	3.0	206	88	4	863	22	17	26	33	1.96
10915--10989	35	2.1	36	87	2	107	40	16	21	22	1.91
10912--11202	102	2.9	102	93	2	489	37	13	19	29	1.90
11107--11179	39	1.9	37	83	5	92	36	13	21	27	1.92
11328--11442	36	3.2	36	72	4	108	44	10	17	27	1.81
11281--11442	72	2.2	75	84	8	208	40	12	18	29	1.87
12558--13091	182	2.9	182	94	1	928	30	21	20	27	1.98
17349--17391	18	2.5	17	85	7	61	67	2	4	25	1.22
17746--17846	37	2.7	37	87	0	130	30	14	11	42	1.82
20172--20227	26	2.2	24	81	9	67	73	1	8	16	1.17
20413--20466	22	2.6	20	75	16	56	22	9	7	61	1.51
20413--20468	21	2.7	20	71	17	51	21	8	7	62	1.48
24837--25256	39	10.8	39	91	2	632	27	19	18	35	1.95
24837--25227	77	5.1	78	92	1	635	27	18	18	34	1.95
24837--25256	116	3.6	116	92	1	664	27	19	18	35	1.95
25349--25511	36	4.6	36	70	16	126	27	19	12	40	1.87
25312--25511	103	1.9	104	86	5	289	28	21	11	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25746--25914	92	1.8	92	92	2	286	36	11	24	27	1.91
25844--25907	17	3.3	19	67	20	51	39	10	25	25	1.88
25961--26214	91	2.8	91	92	0	409	36	16	21	25	1.94
26317--26482	88	1.9	87	87	7	248	30	21	20	27	1.98
27656--27720	25	2.6	25	78	9	69	24	3	4	67	1.24
32946--33041	36	2.7	35	79	6	104	43	23	1	31	1.61
35054--35112	25	2.4	24	77	5	64	44	0	18	37	1.50
36610--36682	37	1.9	38	86	2	103	35	13	16	34	1.88
36934--36970	12	3.0	12	92	4	56	18	54	16	10	1.71
36990--37085	2	51.0	2	71	12	69	51	0	0	48	1.00
37087--37145	11	5.2	11	83	4	64	28	47	11	11	1.76
37083--37147	12	5.6	12	81	7	80	29	46	12	12	1.78
49342--49370	13	2.1	14	93	6	51	0	10	6	82	0.83
49535--49578	21	2.1	21	100	0	88	11	27	13	47	1.77
50365--50423	31	1.9	31	86	10	86	44	5	0	50	1.24
50365--50437	31	2.4	30	82	13	78	43	6	0	49	1.29
53487--53522	18	2.0	18	88	0	54	58	0	19	22	1.40
59630--59705	10	7.7	10	68	24	54	56	21	13	9	1.64
59634--59699	16	4.1	16	94	2	114	56	22	13	7	1.63
60425--60479	24	2.3	25	87	9	87	58	16	10	14	1.64
60438--60485	10	4.4	10	78	19	51	54	22	12	10	1.68
60445--60475	14	2.2	14	94	0	53	54	22	12	9	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60438--60486	24	2.0	24	96	0	89	53	22	14	10	1.71
61579--61614	18	1.9	19	88	5	56	36	5	8	50	1.56
62764--62905	37	3.8	37	78	9	130	32	16	9	41	1.81
62785--62897	36	3.1	36	78	8	113	32	15	8	43	1.77
62920--63237	65	5.0	65	85	4	432	26	19	12	41	1.88
62920--63245	63	5.1	65	86	3	455	25	20	12	41	1.88
63281--63638	131	2.7	132	77	8	359	29	28	16	25	1.97
63817--63845	3	9.7	3	100	0	58	34	0	0	65	0.93

Tables:   1

The End!