genome.fa.s5202.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005202.1 Hibiscus syriacus cultivar Beakdansim tig00011756_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99623

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2013--2051	18	2.2	18	90	0	60	56	2	20	20	1.54
3985--4305	103	3.1	103	96	0	588	25	13	24	36	1.92
4322--4387	23	2.9	23	81	0	69	24	22	24	28	1.99
9708--10028	103	3.1	103	97	0	588	26	13	23	36	1.91
10035--10112	23	3.3	23	78	1	75	25	19	23	32	1.98
13957--14014	29	2.0	29	93	0	98	29	5	39	25	1.77
18440--18753	137	2.3	136	85	3	416	41	13	13	31	1.83
18504--18752	137	1.8	137	92	2	419	40	14	14	30	1.85
19187--19222	16	2.2	16	95	0	63	50	16	11	22	1.77
20961--21122	3	54.3	3	70	15	104	63	3	4	28	1.30
20980--21122	19	7.7	18	67	17	78	64	2	4	27	1.28
21094--21137	19	2.2	19	84	12	52	59	2	13	25	1.46
22314--22349	18	2.0	18	94	0	63	52	0	22	25	1.47
22460--22501	3	14.0	3	89	0	57	30	0	35	33	1.58
23260--23331	24	3.0	24	66	18	69	26	11	18	44	1.83
23237--23370	47	3.0	47	89	7	192	26	13	17	42	1.86
23242--23316	24	3.2	24	67	17	75	32	12	16	40	1.84
23303--23381	40	2.0	40	97	0	149	22	15	18	43	1.88
23428--23460	7	4.6	7	96	3	57	81	0	0	18	0.68
23428--23465	14	2.6	15	87	8	60	78	0	0	21	0.74
23660--23720	22	2.9	21	73	9	52	31	3	9	55	1.48
23792--23817	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26755--26802	23	2.1	23	84	0	60	39	2	4	54	1.32
27357--27394	15	2.4	16	82	8	51	15	21	28	34	1.94
27447--27503	15	3.7	15	77	9	69	17	28	33	21	1.96
29038--29071	6	5.7	6	96	0	59	52	11	0	35	1.38
29650--29727	31	2.5	31	85	0	93	33	14	28	24	1.94
32758--32793	18	2.0	18	94	0	63	52	0	22	25	1.47
32781--32840	30	2.0	30	87	3	86	61	0	15	23	1.33
33187--33285	51	1.9	51	84	8	130	44	14	7	34	1.72
43360--43401	21	2.0	21	85	0	57	16	0	26	57	1.40
44316--44349	14	2.4	14	90	0	50	58	17	2	20	1.51
46285--46339	3	18.0	3	85	10	76	30	0	0	69	0.89
48758--48792	18	2.0	17	88	5	52	48	0	0	51	1.00
54537--54700	59	2.7	61	77	10	149	32	9	14	43	1.78
54775--54886	42	2.7	42	80	5	129	26	23	19	30	1.98
55013--55119	42	2.6	42	80	4	128	28	20	18	32	1.96
55186--55225	20	1.9	22	85	10	57	50	2	17	30	1.59
55241--55341	42	2.5	40	81	4	103	24	19	18	36	1.95
54907--55348	224	2.0	226	88	1	656	33	15	15	35	1.88
55273--55351	41	1.9	42	81	2	97	26	16	20	36	1.93
55662--56395	132	5.6	132	81	1	722	30	22	17	28	1.97
55662--56416	264	2.9	264	82	2	849	31	22	18	28	1.97
59020--59056	19	2.0	19	89	5	58	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61668--61719	24	2.2	22	83	10	59	46	1	1	50	1.23
62014--62049	18	2.0	18	94	0	63	52	0	22	25	1.47
62447--62546	51	2.0	50	84	9	132	47	13	7	33	1.69
64869--65006	31	4.5	31	82	8	156	32	31	23	11	1.91
64868--65037	62	2.7	63	84	7	204	32	30	24	12	1.92
64900--65038	31	4.5	31	81	6	149	33	30	23	12	1.92
64869--65038	93	1.8	93	82	7	220	32	30	24	12	1.93
69494--69671	31	5.7	30	74	15	130	30	31	25	12	1.92
69500--69671	63	2.7	63	83	2	204	31	31	25	12	1.92
78300--78334	12	2.8	13	87	12	56	57	0	0	42	0.99
79775--79854	3	26.7	3	87	0	115	61	0	3	35	1.14
80146--80786	113	5.7	113	94	0	948	29	19	13	37	1.90
81398--82229	84	10.0	84	96	1	1331	35	22	14	28	1.93
81399--82234	167	5.0	167	94	1	1333	35	22	14	28	1.93
83355--83394	17	2.4	17	87	4	55	5	12	0	82	0.82
94725--94759	12	2.9	12	91	8	54	57	0	0	42	0.99
96156--96239	3	29.7	3	75	15	81	61	0	3	34	1.13
96156--96226	11	6.5	11	74	19	60	63	0	4	32	1.14
96156--96234	25	3.1	25	80	9	88	62	0	3	34	1.14
96155--96240	11	7.1	11	69	19	55	60	0	3	36	1.14

Tables:   1

The End!