Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005205.1 Hibiscus syriacus cultivar Beakdansim tig00011773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40306

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93--421
65
5.1
65
89
1
482
26
20
12
41
1.88
474--808
134
2.5
131
81
6
379
28
28
15
26
1.96
998--1025
3
9.3
3
100
0
56
32
0
0
67
0.91
5542--5594
3
18.7
3
77
11
58
32
0
1
66
1.03
5673--5713
14
2.9
14
81
0
55
29
39
21
9
1.86
12738--12769
12
2.5
13
95
5
57
75
0
15
9
1.05
12751--12781
16
1.9
16
100
0
62
74
0
12
12
1.08
17687--17751
29
2.2
29
86
5
87
38
4
6
50
1.48
20719--20820
42
2.5
42
86
1
134
24
24
20
30
1.99
20797--21179
177
2.2
175
88
1
561
30
19
20
30
1.97
21419--21453
3
12.0
3
87
6
54
28
0
0
71
0.86
21414--21449
17
2.2
16
90
5
54
25
0
0
75
0.81
21573--21666
42
2.3
41
84
1
125
23
20
23
32
1.97
21649--22031
177
2.2
175
87
0
559
31
19
20
29
1.97
22000--22085
42
2.0
42
88
0
127
27
19
19
32
1.97
23605--25961
632
3.7
632
98
0
4547
37
9
7
45
1.66
27381--27428
11
4.3
11
80
12
53
6
8
6
79
1.07
27391--27442
24
2.2
24
82
3
61
11
9
5
73
1.25
28518--28560
22
2.0
22
95
0
77
9
18
6
65
1.44
28661--28744
43
2.0
43
90
0
132
53
21
3
21
1.61
31858--31882
2
12.5
2
100
0
50
52
0
48
0
1.00
35685--35726
20
2.0
21
90
4
68
35
14
9
40
1.78

Tables:   1

The End!