genome.fa.s5207.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005207.1 Hibiscus syriacus cultivar Beakdansim tig00011775_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86184

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2749--2775	2	13.5	2	100	0	54	48	0	0	51	1.00
4059--4110	17	3.2	17	75	10	54	50	13	3	32	1.60
7247--7344	35	2.8	35	100	0	196	34	5	3	57	1.36
19867--19894	7	4.0	7	100	0	56	14	42	0	42	1.45
22986--23013	2	14.0	2	100	0	56	50	0	0	50	1.00
23013--23061	2	25.5	2	79	8	57	44	0	55	0	0.99
25243--25352	29	3.8	28	74	12	96	43	2	3	50	1.34
28902--29115	30	7.4	30	89	7	277	13	28	29	27	1.94
28902--29085	90	2.1	90	92	3	311	13	28	30	27	1.94
29023--29184	51	3.2	51	84	8	181	12	31	27	28	1.93
28900--29161	30	9.5	27	88	8	254	14	29	28	27	1.95
29053--29185	24	5.4	24	89	5	160	12	32	26	28	1.93
36579--36631	24	2.2	24	83	6	63	37	1	0	60	1.08
36595--36657	9	7.4	9	75	12	53	31	3	0	65	1.09
46339--46429	46	2.0	46	100	0	182	30	19	7	41	1.80
46344--46446	46	2.2	45	88	6	136	34	19	5	39	1.76
53056--53082	12	2.2	12	100	0	54	14	7	22	55	1.64
53769--54011	84	2.9	86	92	4	399	41	10	15	32	1.81
57513--57759	120	2.1	120	94	0	431	37	16	13	32	1.88
57348--57938	303	2.0	303	94	0	1047	34	16	14	34	1.89
57633--58220	183	3.2	183	93	1	993	34	16	14	34	1.89
60149--60209	23	2.7	23	86	0	86	26	26	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60225--60545	103	3.1	103	94	0	570	37	23	13	26	1.91
61725--61769	21	2.1	21	87	0	63	15	24	28	31	1.96
62473--62530	12	4.8	12	89	0	80	18	32	8	39	1.82
62473--62530	18	3.2	18	87	0	71	18	32	8	39	1.82
62473--62517	6	7.5	6	87	0	63	20	33	8	37	1.83
64028--64791	200	3.8	200	95	0	1341	30	18	14	35	1.91
65013--65073	19	3.3	18	88	2	59	52	11	1	34	1.47
65025--65073	19	2.6	19	96	0	89	55	10	2	32	1.45
66861--66926	33	2.0	33	90	0	105	22	48	0	28	1.51
66961--67024	21	3.0	21	88	0	83	18	28	9	43	1.81
69242--69288	20	2.4	19	82	10	67	19	17	10	53	1.72
69422--69468	20	2.4	19	82	10	67	19	17	10	53	1.72
69209--69680	180	2.6	182	91	0	723	26	16	13	42	1.86

Tables:   1

The End!