Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005208.1 Hibiscus syriacus cultivar Beakdansim tig00011776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91090

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4707--4731
11
2.3
11
100
0
50
92
0
8
0
0.40
6047--6150
42
2.5
42
81
4
122
30
22
24
23
1.99
6153--6303
59
2.5
59
86
1
221
31
13
26
28
1.94
6353--6437
42
2.0
42
84
8
111
34
20
20
25
1.96
5926--6720
287
2.8
285
87
0
1149
31
16
24
28
1.96
6436--6593
59
2.7
59
89
1
244
31
12
27
29
1.92
6779--7027
52
4.6
55
72
12
176
41
19
10
28
1.83
6838--7054
52
4.0
52
79
9
229
41
17
10
30
1.84
6726--7044
110
2.9
108
83
6
370
40
18
9
31
1.83
13437--13485
21
2.3
22
86
10
75
32
26
22
18
1.97
13582--13624
21
2.0
21
90
0
68
11
25
44
18
1.84
17461--17505
3
15.3
3
86
4
65
62
0
0
37
0.96
23851--23880
11
2.7
11
94
0
51
13
63
13
10
1.52
32281--32356
31
2.5
31
84
4
91
30
11
10
47
1.74
32598--32668
24
3.0
23
77
8
79
43
4
0
52
1.20
32630--32662
17
1.9
17
88
11
50
39
3
0
57
1.14
34051--34095
17
2.6
17
78
21
58
44
2
6
46
1.42
37042--37538
133
3.7
133
86
1
667
29
17
22
30
1.97
38822--38895
35
2.0
38
84
10
100
25
18
22
32
1.97
48149--48476
174
1.9
176
88
2
500
35
14
15
34
1.88
49548--49652
42
2.5
41
78
3
111
25
21
20
32
1.97
50900--50974
39
2.0
38
87
7
109
25
16
24
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51584--51658
10
7.7
10
69
21
61
58
20
12
9
1.60
51588--51652
16
4.1
16
93
0
112
58
21
12
7
1.59
52402--52457
14
4.3
14
78
17
66
51
25
14
8
1.70
52382--52456
24
3.1
24
84
3
89
54
21
12
12
1.69
53318--53415
44
2.2
44
82
10
112
29
25
19
25
1.98
54572--54626
22
2.5
22
100
0
110
60
3
7
29
1.41
55462--55511
7
7.3
7
84
4
57
2
20
0
78
0.86
55462--55511
14
3.6
14
83
2
66
2
20
0
78
0.86
55446--55508
21
3.1
21
84
8
78
3
20
0
76
0.93
61608--61657
20
2.5
20
100
0
100
30
36
16
18
1.92
61622--61827
65
3.2
63
78
12
186
32
22
17
27
1.96
68883--68937
22
2.5
22
100
0
110
60
3
7
29
1.41
69771--69813
7
6.3
7
81
5
52
4
16
0
79
0.90
75890--76047
65
2.4
63
80
13
171
31
23
17
27
1.97
81900--81952
23
2.4
22
78
6
54
26
26
22
24
2.00
83493--83544
27
1.9
27
84
0
68
9
46
11
32
1.73
84801--84843
19
2.4
19
84
7
54
23
30
18
27
1.98
86725--86783
29
2.0
30
83
9
77
61
3
6
28
1.38
88014--88082
3
23.3
3
76
14
63
57
0
1
40
1.07
88015--88082
21
3.3
22
84
13
83
57
0
1
41
1.08
88014--88068
25
2.2
25
87
6
76
58
0
1
40
1.09
88241--88498
76
3.4
76
93
0
435
34
21
18
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88622--88983
76
4.8
76
93
1
604
35
22
19
23
1.96

Tables:   1

The End!