genome.fa.s5210.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005210.1 Hibiscus syriacus cultivar Beakdansim tig00011788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76572

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61--89	2	14.5	2	100	0	58	51	0	0	48	1.00
1844--1895	7	6.9	7	75	16	50	19	25	26	28	1.98
1844--1895	23	2.3	23	86	0	68	19	25	26	28	1.98
2426--2484	27	2.2	27	85	11	77	50	15	10	23	1.74
8132--8592	228	2.0	228	97	0	877	40	14	18	25	1.90
14705--14830	50	2.5	50	81	7	157	15	34	28	20	1.94
15035--15075	18	2.3	18	91	4	66	29	4	2	63	1.28
15137--15358	111	2.0	111	92	1	374	36	7	10	45	1.67
16592--16785	93	2.1	93	99	0	379	20	16	29	34	1.94
17320--17372	3	17.7	3	84	0	61	32	24	35	7	1.84
32706--32742	12	3.2	12	77	14	51	32	5	51	10	1.60
38602--38655	27	2.0	27	100	0	108	33	7	33	25	1.84
45766--45806	20	2.1	21	86	13	61	39	4	0	56	1.21
45770--45813	20	2.3	18	80	11	52	40	4	0	54	1.21
45881--45928	25	1.9	25	82	0	60	50	0	2	47	1.12
49293--49337	22	2.0	22	100	0	90	20	22	26	31	1.98
53986--54038	23	2.2	24	83	9	65	56	13	3	26	1.54
54421--54758	59	5.9	59	86	6	451	29	21	11	37	1.89
54502--54599	50	2.0	50	93	0	169	28	25	13	32	1.93
54658--54756	31	3.3	31	64	18	82	29	21	8	41	1.81
55084--55155	22	3.5	20	85	12	94	26	30	13	29	1.94
55103--55306	95	2.1	95	82	1	239	27	25	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60996--61048	23	2.2	24	83	9	65	56	11	3	28	1.51
61425--61767	59	5.9	59	85	4	437	28	20	12	38	1.89
61638--61734	28	3.4	28	65	23	74	29	21	10	38	1.87
62093--62163	22	3.5	20	83	10	83	28	26	15	29	1.96
72701--72741	19	2.2	19	100	0	82	34	36	4	24	1.77

Tables:   1

The End!