Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005211.1 Hibiscus syriacus cultivar Beakdansim tig00011790_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87709
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:8724 original size:14 final size:14
Alignment explanation
Indices: 8697--8724 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8687 TTATTTTATA
8697 ATTTTATAATAATT
1 ATTTTATAATAATT
8711 ATTTTATAATAATT
1 ATTTTATAATAATT
8725 TATTAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTTATAATAATT
Found at i:8731 original size:22 final size:22
Alignment explanation
Indices: 8678--8743 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 22
8668 AATATGATAG
8678 ATTTAATT-ATTATTTTATAAT-
1 ATTT-ATTAATTATTTTATAATA
8699 -TTTATAATAATTATTTTATAATA
1 ATTTAT--TAATTATTTTATAATA
8722 ATTTATTAA-T-TTTTA-AATA
1 ATTTATTAATTATTTTATAATA
8741 ATT
1 ATT
8744 GTTTTTTTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
19 9 0.22
20 8 0.20
21 2 0.05
22 16 0.40
24 5 0.12
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTTATTAATTATTTTATAATA
Found at i:8731 original size:25 final size:23
Alignment explanation
Indices: 8680--8731 Score: 70
Period size: 22 Copynumber: 2.2 Consensus size: 23
8670 TATGATAGAT
*
8680 TTAATTATTATTTTATAATTTTA
1 TTAATAATTATTTTATAATTTTA
8703 -TAATAATTATTTTATAATAATTTA
1 TTAATAATTATTTTATAAT--TTTA
8727 TTAAT
1 TTAAT
8732 TTTTAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 17 0.68
24 4 0.16
25 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTAATAATTATTTTATAATTTTA
Found at i:12327 original size:50 final size:50
Alignment explanation
Indices: 12273--12367 Score: 190
Period size: 50 Copynumber: 1.9 Consensus size: 50
12263 TTTTTAAGTA
12273 AATATTTATTTAAAGATAATTTTTATATATTTAATATTATACGTTAAGGT
1 AATATTTATTTAAAGATAATTTTTATATATTTAATATTATACGTTAAGGT
12323 AATATTTATTTAAAGATAATTTTTATATATTTAATATTATACGTT
1 AATATTTATTTAAAGATAATTTTTATATATTTAATATTATACGTT
12368 CATATGTTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (50 bp):
AATATTTATTTAAAGATAATTTTTATATATTTAATATTATACGTTAAGGT
Found at i:19966 original size:14 final size:14
Alignment explanation
Indices: 19947--19976 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
19937 TGCAAATTTC
19947 TTTTCTTTTCTTCT
1 TTTTCTTTTCTTCT
19961 TTTTCTTTTCTTCT
1 TTTTCTTTTCTTCT
19975 TT
1 TT
19977 GAGTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTCTTTTCTTCT
Found at i:24153 original size:105 final size:105
Alignment explanation
Indices: 24017--24286 Score: 450
Period size: 105 Copynumber: 2.6 Consensus size: 105
24007 TTTTTCAGAT
*
24017 GAGTTATTCTCATTATGAACTCTTTTAGAAATGTTGATTCACCTCCTTCTGGGGTGAATTTGAAA
1 GAGTTATTCTCATTATGAACTCTTCTAGAAATGTTGATTCACCTCCTTCTGGGGTGAATTTGAAA
*
24082 GGAACATGCTATTCTCATTACGAACCTTCTCCTTTAGGAC
66 GGAACAAGCTATTCTCATTACGAACCTTCTCCTTTAGGAC
* * *
24122 GAGTTATTCTCATTATGAACTCTTCTGGAAATGTTGATTCACCTCTTTCTAGGGTGAATTTGAAA
1 GAGTTATTCTCATTATGAACTCTTCTAGAAATGTTGATTCACCTCCTTCTGGGGTGAATTTGAAA
*
24187 GGAACAAGCTCTTCTCATTACGAACCTTCTCCTTTAGGAC
66 GGAACAAGCTATTCTCATTACGAACCTTCTCCTTTAGGAC
* * * *
24227 AAGTTCTTCTCATTATGAACTCTTCTAGAAATGTCGATTCACCTCCTTCTGGGGTAAATT
1 GAGTTATTCTCATTATGAACTCTTCTAGAAATGTTGATTCACCTCCTTCTGGGGTGAATT
24287 ATAGTTGTTA
Statistics
Matches: 152, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
105 152 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (105 bp):
GAGTTATTCTCATTATGAACTCTTCTAGAAATGTTGATTCACCTCCTTCTGGGGTGAATTTGAAA
GGAACAAGCTATTCTCATTACGAACCTTCTCCTTTAGGAC
Found at i:25196 original size:8 final size:8
Alignment explanation
Indices: 25183--25248 Score: 71
Period size: 8 Copynumber: 7.8 Consensus size: 8
25173 ACCCTCCTTT
25183 TTTTTTTC
1 TTTTTTTC
25191 -TTTTTTC
1 TTTTTTTC
25198 TTTTTTTC
1 TTTTTTTC
*
25206 TTTTTCATTT
1 TTTTT--TTC
25216 TTTTTTTC
1 TTTTTTTC
25224 ATTTTTTTC
1 -TTTTTTTC
25233 ATTTTTTTTC
1 --TTTTTTTC
25243 TTTTTT
1 TTTTTT
25249 ATTATTTTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
7 7 0.14
8 20 0.40
9 8 0.16
10 15 0.30
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTTTC
Found at i:25204 original size:21 final size:21
Alignment explanation
Indices: 25180--25258 Score: 72
Period size: 21 Copynumber: 3.5 Consensus size: 21
25170 CGAACCCTCC
25180 TTTTTTTTTTCTTTTTTCTTT
1 TTTTTTTTTTCTTTTTTCTTT
*
25201 TTTTCTTTTTCATTTTTT-TTT
1 TTTTTTTTTTC-TTTTTTCTTT
25222 TCATTTTTTTCATT-TTTTTTCTTT
1 T--TTTTTTT--TTCTTTTTTCTTT
25246 TTTATTATTTTTC
1 TTT-TT-TTTTTC
25259 ACCTTTTCAT
Statistics
Matches: 47, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
21 14 0.30
22 10 0.21
23 14 0.30
24 7 0.15
25 2 0.04
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (21 bp):
TTTTTTTTTTCTTTTTTCTTT
Found at i:25220 original size:26 final size:26
Alignment explanation
Indices: 25186--25274 Score: 83
Period size: 26 Copynumber: 3.3 Consensus size: 26
25176 CTCCTTTTTT
25186 TTTTCTTTTTTCTTTTTTTCTTTTTCA
1 TTTT-TTTTTTCTTTTTTTCTTTTTCA
25213 TTTTTTTTTTCATTTTTTTCATTTTT--
1 TTTTTTTTTTC-TTTTTTTC-TTTTTCA
* * *
25239 TTTCTTTTTTATTATTTTTCACCTTTTCA
1 TTTTTTTTTTCTT-TTTTT--CTTTTTCA
25268 TTTTTTT
1 TTTTTTT
25275 CATTCATTCT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
25 2 0.04
26 21 0.41
27 16 0.31
28 6 0.12
29 6 0.12
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (26 bp):
TTTTTTTTTTCTTTTTTTCTTTTTCA
Found at i:25239 original size:37 final size:33
Alignment explanation
Indices: 25180--25257 Score: 102
Period size: 37 Copynumber: 2.2 Consensus size: 33
25170 CGAACCCTCC
25180 TTTTTTTTTTCTTTTTTCTTTTTTTCTTTTTCA
1 TTTTTTTTTTCTTTTTTCTTTTTTTCTTTTTCA
*
25213 TTTTTTTTTTCATTTTTTTCATTTTTTTTCTTTTTTA
1 TTTTTTTTTTC--TTTTTTC--TTTTTTTCTTTTTCA
*
25250 TTATTTTT
1 TTTTTTTT
25258 CACCTTTTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
33 11 0.28
35 7 0.18
37 21 0.54
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85
Consensus pattern (33 bp):
TTTTTTTTTTCTTTTTTCTTTTTTTCTTTTTCA
Found at i:25255 original size:19 final size:19
Alignment explanation
Indices: 25198--25257 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
25188 TTCTTTTTTC
*
25198 TTTTTTTCTTTTTCATT-T
1 TTTTTTTCTTTTTTATTAT
*
25216 TTTTTTTCATTTTTT-TCAT
1 TTTTTTTC-TTTTTTATTAT
25235 TTTTTTTCTTTTTTATTAT
1 TTTTTTTCTTTTTTATTAT
25254 TTTT
1 TTTT
25258 CACCTTTTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 15 0.42
19 21 0.58
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTTTTCTTTTTTATTAT
Found at i:25274 original size:9 final size:9
Alignment explanation
Indices: 25183--25278 Score: 66
Period size: 9 Copynumber: 11.2 Consensus size: 9
25173 ACCCTCCTTT
25183 TTTTTTTC-
1 TTTTTTTCA
25191 -TTTTTTC-
1 TTTTTTTCA
25198 TTTTTTTC-
1 TTTTTTTCA
*
25206 TTTTTCATT-T
1 TTTTT--TTCA
25216 TTTTTTTCA
1 TTTTTTTCA
25225 TTTTTTTCA
1 TTTTTTTCA
25234 TTTTTTT--
1 TTTTTTTCA
25241 TCTTTTTT-A
1 T-TTTTTTCA
25250 TTATTTTTCA
1 TT-TTTTTCA
**
25260 -CCTTTTCA
1 TTTTTTTCA
25268 TTTTTTTCA
1 TTTTTTTCA
25277 TT
1 TT
25279 CATTCTTCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 19
0.75 0.05 0.20
Matches are distributed among these distances:
7 8 0.11
8 27 0.37
9 30 0.41
10 8 0.11
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:28827 original size:7 final size:7
Alignment explanation
Indices: 28815--28848 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
28805 AATGAATGTA
28815 AAGAATG
1 AAGAATG
*
28822 AAGAATA
1 AAGAATG
28829 AAGAATG
1 AAGAATG
28836 AAGAATG
1 AAGAATG
28843 AA-AATG
1 AAGAATG
28849 TATATAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 4 0.16
7 21 0.84
ACGTcount: A:0.62, C:0.00, G:0.24, T:0.15
Consensus pattern (7 bp):
AAGAATG
Found at i:28832 original size:14 final size:14
Alignment explanation
Indices: 28813--28841 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
28803 GAAATGAATG
28813 TAAAGAATGAAGAA
1 TAAAGAATGAAGAA
28827 TAAAGAATGAAGAA
1 TAAAGAATGAAGAA
28841 T
1 T
28842 GAAAATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.21, T:0.17
Consensus pattern (14 bp):
TAAAGAATGAAGAA
Found at i:36463 original size:26 final size:26
Alignment explanation
Indices: 36427--36485 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
36417 TTTTTACCTT
*
36427 ATGCTTTTCCTCTAATAATCACAAAA
1 ATGCTTCTCCTCTAATAATCACAAAA
* *
36453 ATGCTTCTCCTCTAATAATCGCAAAT
1 ATGCTTCTCCTCTAATAATCACAAAA
36479 ATGCTTC
1 ATGCTTC
36486 GAATATCACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (26 bp):
ATGCTTCTCCTCTAATAATCACAAAA
Found at i:37290 original size:3 final size:3
Alignment explanation
Indices: 37282--37353 Score: 99
Period size: 3 Copynumber: 24.0 Consensus size: 3
37272 TTTAATTTAT
* * * * *
37282 TTA TTA TTA TAA TTA TAA TTA TTA TTA TTA TAA TTA TTA TAA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37330 TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
37354 AATACATATA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:37798 original size:25 final size:24
Alignment explanation
Indices: 37753--37804 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 24
37743 GACCTGCAAT
*
37753 GAAAAAAAAGGACAGAGAGACAGA
1 GAAAAAAAAGGACAAAGAGACAGA
37777 GAAAAAAAA-GACAAAAGAAGACAGA
1 GAAAAAAAAGGAC-AAAG-AGACAGA
37802 GAA
1 GAA
37805 CAGATCCCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 3 0.12
24 12 0.48
25 10 0.40
ACGTcount: A:0.67, C:0.08, G:0.25, T:0.00
Consensus pattern (24 bp):
GAAAAAAAAGGACAAAGAGACAGA
Found at i:39485 original size:29 final size:28
Alignment explanation
Indices: 39443--39510 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
39433 AAAAGTTCAT
* *
39443 ATATTTAATTTTTAATTATTTCTTTTCAAA
1 ATATTT-ATATTTAATTA-TTATTTTCAAA
* * *
39473 ATTTTTATATTTACTTATTATTTTCATA
1 ATATTTATATTTAATTATTATTTTCAAA
39501 ATATTTATAT
1 ATATTTATAT
39511 GTTTTATTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 18 0.56
29 9 0.28
30 5 0.16
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (28 bp):
ATATTTATATTTAATTATTATTTTCAAA
Found at i:49585 original size:7 final size:7
Alignment explanation
Indices: 49573--49636 Score: 62
Period size: 7 Copynumber: 9.4 Consensus size: 7
49563 ATTATGCTTG
49573 AAGAAAA
1 AAGAAAA
49580 AAG-AAA
1 AAGAAAA
49586 AAGAAAA
1 AAGAAAA
*
49593 AGAAAAAA
1 A-AGAAAA
*
49601 AAGAGAA
1 AAGAAAA
*
49608 AA-AAGA
1 AAGAAAA
49614 AA-AAAA
1 AAGAAAA
*
49620 GAGAAAA
1 AAGAAAA
49627 AAGAAAA
1 AAGAAAA
49634 AAG
1 AAG
49637 GGGGTCAAGG
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
6 14 0.30
7 26 0.57
8 6 0.13
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAGAAAA
Found at i:49603 original size:9 final size:9
Alignment explanation
Indices: 49573--49635 Score: 76
Period size: 9 Copynumber: 7.0 Consensus size: 9
49563 ATTATGCTTG
49573 AAGAAAAAA
1 AAGAAAAAA
49582 GAA-AAAGAAA
1 -AAGAAA-AAA
49592 AAGAAAAAA
1 AAGAAAAAA
*
49601 AAGAGAAAA
1 AAGAAAAAA
49610 AAG-AAAAA
1 AAGAAAAAA
*
49618 AAGAGAAAA
1 AAGAAAAAA
49627 AAGAAAAAA
1 AAGAAAAAA
49636 GGGGGTCAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
8 7 0.15
9 31 0.67
10 8 0.17
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (9 bp):
AAGAAAAAA
Found at i:49607 original size:17 final size:17
Alignment explanation
Indices: 49577--49635 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
49567 TGCTTGAAGA
*
49577 AAAAAGAAAAAGAAAAAG
1 AAAAA-AAAGAGAAAAAG
49595 AAAAAAAAGAGAAAAA-
1 AAAAAAAAGAGAAAAAG
49611 AGAAAAAAAGAGAAAAAAG
1 A-AAAAAAAGAG-AAAAAG
49630 AAAAAA
1 AAAAAA
49636 GGGGGTCAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
16 1 0.03
17 20 0.54
18 15 0.41
19 1 0.03
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAGAAAAAG
Found at i:49610 original size:18 final size:18
Alignment explanation
Indices: 49589--49635 Score: 87
Period size: 17 Copynumber: 2.7 Consensus size: 18
49579 AAAGAAAAAG
49589 AAAAAGAAAAAAAAGAGA
1 AAAAAGAAAAAAAAGAGA
49607 AAAAAG-AAAAAAAGAGA
1 AAAAAGAAAAAAAAGAGA
49624 AAAAAGAAAAAA
1 AAAAAGAAAAAA
49636 GGGGGTCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.61
18 11 0.39
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAAAAAGAGA
Found at i:51126 original size:83 final size:83
Alignment explanation
Indices: 50789--51124 Score: 600
Period size: 83 Copynumber: 4.0 Consensus size: 83
50779 GAATTTGCCA
*
50789 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACAAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
50854 TAGAAGATGAATGTGTTC
66 TAGAAGATGAATGTGTTC
*
50872 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAATCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
*
50937 TAGAAGATAAATGTGTTC
66 TAGAAGATGAATGTGTTC
*
50955 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCTGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
51020 TAGAAGATGAATGTGTTC
66 TAGAAGATGAATGTGTTC
*
51038 ATAGTATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
* * *
51103 TGGAAGATGAATTTGCTC
66 TAGAAGATGAATGTGTTC
51121 ATAG
1 ATAG
51125 TAGAAATAAG
Statistics
Matches: 242, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 242 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (83 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
TAGAAGATGAATGTGTTC
Found at i:52109 original size:113 final size:113
Alignment explanation
Indices: 51907--52416 Score: 715
Period size: 113 Copynumber: 4.5 Consensus size: 113
51897 TTAGCAAAGA
*
51907 CTCAAATTCATCAATTGATGGATTATCTTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTG
1 CTCAAATTCATCAATTGATGGATTATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
* *
51972 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTA
66 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTG
* *
52020 C-CTGAATTCATCAATTGATGGATTATCTTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCT
1 CTC-AAATTCATCAATTGATGGATTATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
* *
52084 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
65 GAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTG
* * ** * ***
52133 CTCAAATCCATCACTTGATGGAGCAGCTTTTCCA-ATTCGAGTTCATAATGAGAAGAACTCATCT
1 CTCAAATTCATCAATTGATGGATTATCTTTTCCAGA-GAAAGTTCATAATGAGAAGAACTCATCT
*
52197 GAAGAAGGAAGAAAAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTG
65 GAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTG
* *
52246 CTCAAA-TCTATCATTTGATGGATTGA-CATTTCCAGAGAAAAGTTCATAATGAGAAGAACTCAT
1 CTCAAATTC-ATCAATTGATGGATT-ATCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCAT
* *
52309 CTAAAGAAGGAAGAAAAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTG
63 CTGAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTG
* * * *
52360 CTCAAATCCATCACTTGATAGATCAGT-TTTTCCAGAGAAAGTTCATAATGAGAAGAA
1 CTCAAATTCATCAATTGATGGATTA-TCTTTTCCAGAGAAAGTTCATAATGAGAAGAA
52417 TTTGTTCAAC
Statistics
Matches: 357, Mismatches: 30, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
112 3 0.01
113 250 0.70
114 103 0.29
115 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (113 bp):
CTCAAATTCATCAATTGATGGATTATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
AAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTG
Found at i:52393 original size:227 final size:226
Alignment explanation
Indices: 51933--52416 Score: 740
Period size: 227 Copynumber: 2.1 Consensus size: 226
51923 GATGGATTAT
* *
51933 CTTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATGA
* * *
51998 GAAGAACTTGTTCAACCTTTTACCTGAATTCATCAATTGATGGATTATCTTTTCCAGAGAAAGTT
66 GAAGAACTTGTTCAACCTTTTACCTCAAATCATCAATTGATGGATTATCATTTCCAGAGAAAGTT
* * *
52063 CATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACC
131 CATAATAAGAAGAACTCATCTAAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACC
*
52128 TTTTGCTCAAATCCATCACTTGATGGAGCAG
196 TTTTGCTCAAATCCATCACTTGATAGAGCAG
***
52159 CTTTTCCA-ATTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATG
1 CTTTTCCAGA-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATG
* * *
52223 AGAAGAGCTTGTTCAACCTTTT-GCTCAAATCTATCATTTGATGGATTGA-CATTTCCAGAGAAA
65 AGAAGAACTTGTTCAACCTTTTACCTCAAATC-ATCAATTGATGGATT-ATCATTTCCAGAG-AA
* *
52286 AGTTCATAATGAGAAGAACTCATCTAAAGAAGGAAGAAAAAGTTCATAATGAGAAGAGCTTGTTC
127 AGTTCATAATAAGAAGAACTCATCTAAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTC
*
52351 AACCTTTTGCTCAAATCCATCACTTGATAGATCAG
192 AACCTTTTGCTCAAATCCATCACTTGATAGAGCAG
*
52386 TTTTTCCAGAGAAAGTTCATAATGAGAAGAA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAA
52417 TTTGTTCAAC
Statistics
Matches: 231, Mismatches: 22, Indels: 9
0.88 0.08 0.03
Matches are distributed among these distances:
225 7 0.03
226 102 0.44
227 121 0.52
228 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (226 bp):
CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATGA
GAAGAACTTGTTCAACCTTTTACCTCAAATCATCAATTGATGGATTATCATTTCCAGAGAAAGTT
CATAATAAGAAGAACTCATCTAAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACC
TTTTGCTCAAATCCATCACTTGATAGAGCAG
Found at i:52443 original size:73 final size:73
Alignment explanation
Indices: 52324--52561 Score: 406
Period size: 73 Copynumber: 3.3 Consensus size: 73
52314 GAAGGAAGAA
** *
52324 AAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTTGATAGATCAGTTT
1 AAAGTTCATAATGAGAAGAATTTGTTCAACCTTTCGCTCAAATCCATCACTTGATAGATCAGTTT
52389 TTCCAGAG
66 TTCCAGAG
52397 AAAGTTCATAATGAGAAGAATTTGTTCAACCTTTCGCTCAAATCCATCACTTGATAGATCAGTTT
1 AAAGTTCATAATGAGAAGAATTTGTTCAACCTTTCGCTCAAATCCATCACTTGATAGATCAGTTT
52462 TTCCAGAG
66 TTCCAGAG
* * * *
52470 AAAGTTCATAATGAGAAGAATTTTTTCAACCTTTCGCTCAAATCCATCACTTGATGGAGCAGCTT
1 AAAGTTCATAATGAGAAGAATTTGTTCAACCTTTCGCTCAAATCCATCACTTGATAGATCAGTTT
52535 TTCCAGAG
66 TTCCAGAG
52543 -AAGTTCATAATGAGAAGAA
1 AAAGTTCATAATGAGAAGAA
52562 CTCATCTGAA
Statistics
Matches: 158, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
72 19 0.12
73 139 0.88
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (73 bp):
AAAGTTCATAATGAGAAGAATTTGTTCAACCTTTCGCTCAAATCCATCACTTGATAGATCAGTTT
TTCCAGAG
Found at i:52956 original size:3 final size:3
Alignment explanation
Indices: 52948--53034 Score: 120
Period size: 3 Copynumber: 29.0 Consensus size: 3
52938 TTTAATTTAT
* * * * * *
52948 TTA TTA TTA TAA TTA TAA TAA TTA TTA TTA TAA TTA TTA TAA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
52996 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
53035 AATACATATA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:53483 original size:26 final size:27
Alignment explanation
Indices: 53434--53489 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
53424 GACCTGCAAT
* * *
53434 GAAAAAAAAGGACAGAGAGGAGACAGA
1 GAAAAAAAAAGACAGAAAGAAGACAGA
53461 GAAAAAAAAAGACA-AAAGAAGACAGA
1 GAAAAAAAAAGACAGAAAGAAGACAGA
53487 GAA
1 GAA
53490 CAGATCCCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.66, C:0.07, G:0.27, T:0.00
Consensus pattern (27 bp):
GAAAAAAAAAGACAGAAAGAAGACAGA
Found at i:54481 original size:13 final size:13
Alignment explanation
Indices: 54465--54504 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
54455 ATATAATAAA
54465 TAAATATTTATTT
1 TAAATATTTATTT
*
54478 TAAATAAATTATTT
1 TAAAT-ATTTATTT
54492 T-AATATTTATTT
1 TAAATATTTATTT
54504 T
1 T
54505 TCAATATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 8 0.33
13 8 0.33
14 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAATATTTATTT
Found at i:56002 original size:14 final size:14
Alignment explanation
Indices: 55983--56009 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
55973 CGGTTGCCTG
55983 TCTGGAATCTTGAT
1 TCTGGAATCTTGAT
55997 TCTGGAATCTTGA
1 TCTGGAATCTTGA
56010 AGTTCCGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (14 bp):
TCTGGAATCTTGAT
Found at i:56678 original size:11 final size:11
Alignment explanation
Indices: 56664--56690 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
56654 GTTTTTTCTC
56664 TTTTTTGTTTT
1 TTTTTTGTTTT
56675 TTTTTTGTTTT
1 TTTTTTGTTTT
56686 TTTTT
1 TTTTT
56691 CCGACTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:60297 original size:61 final size:60
Alignment explanation
Indices: 60229--60350 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 60
60219 CACGAAACAG
60229 TCAAAGAATTAAATTTGAAAGAAAATGGAAATGAAAATACTGGAATGAAGAAAACAGACAA
1 TCAAAGAATTAAATTTGAAAGAAAATGGAAATGAAAA-ACTGGAATGAAGAAAACAGACAA
* * *
60290 TCAAAGAATTAAATTTGAAAGAAAATGGAAATGAAGAGCTGGAATGAAGAAAATAGACAA
1 TCAAAGAATTAAATTTGAAAGAAAATGGAAATGAAAAACTGGAATGAAGAAAACAGACAA
60350 T
1 T
60351 GAATTCGAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
60 22 0.38
61 36 0.62
ACGTcount: A:0.56, C:0.06, G:0.20, T:0.19
Consensus pattern (60 bp):
TCAAAGAATTAAATTTGAAAGAAAATGGAAATGAAAAACTGGAATGAAGAAAACAGACAA
Found at i:60370 original size:61 final size:60
Alignment explanation
Indices: 60229--60376 Score: 156
Period size: 61 Copynumber: 2.4 Consensus size: 60
60219 CACGAAACAG
**
60229 TCAAAGAATTAAATTTGAAAGAAAATGGAAATGAAAATACTGGAATGAAGAAAACAGACAA
1 TCAAAGAA-TAAAAATGAAAGAAAATGGAAATGAAAATACTGGAATGAAGAAAACAGACAA
** * * *
60290 TCAAAGAATTAAATTTGAAAGAAAATGGAAATGAAGA-GCTGGAATGAAGAAAATAGACAA
1 TCAAAGAA-TAAAAATGAAAGAAAATGGAAATGAAAATACTGGAATGAAGAAAACAGACAA
* *
60350 TGAATTCGAA-AAGAAATGAAAGAAAAT
1 TCAA--AGAATAA-AAATGAAAGAAAAT
60377 TTGTTTTCCA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
60 26 0.34
61 48 0.62
62 3 0.04
ACGTcount: A:0.57, C:0.05, G:0.20, T:0.18
Consensus pattern (60 bp):
TCAAAGAATAAAAATGAAAGAAAATGGAAATGAAAATACTGGAATGAAGAAAACAGACAA
Found at i:63250 original size:44 final size:45
Alignment explanation
Indices: 63187--63298 Score: 183
Period size: 45 Copynumber: 2.5 Consensus size: 45
63177 GGTAAGCATG
63187 AAAATAAGCTTACGAGCTTATGG-A-ATAATGGCAAGTATGTTGGT
1 AAAATAAGCTTACGAGCTTATGGTACA-AATGGCAAGTATGTTGGT
* *
63231 AAAATAAGCTTACGAGCTTATGGTACAAATGGTAAGTATTTTGGT
1 AAAATAAGCTTACGAGCTTATGGTACAAATGGCAAGTATGTTGGT
63276 AAAATAAGCTTACGAGCTTATGG
1 AAAATAAGCTTACGAGCTTATGG
63299 CTATTAAATG
Statistics
Matches: 64, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
44 23 0.36
45 40 0.62
46 1 0.02
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (45 bp):
AAAATAAGCTTACGAGCTTATGGTACAAATGGCAAGTATGTTGGT
Found at i:63255 original size:24 final size:24
Alignment explanation
Indices: 63227--63298 Score: 64
Period size: 24 Copynumber: 3.1 Consensus size: 24
63217 GCAAGTATGT
63227 TGGTAAAATAAGCTTACGAGCTTA
1 TGGTAAAATAAGCTTACGAGCTTA
* * *
63251 TGGTACAAAT--G-GTA--AGTATTT
1 TGGTA-AAATAAGCTTACGAG-CTTA
63272 TGGTAAAATAAGCTTACGAGCTTA
1 TGGTAAAATAAGCTTACGAGCTTA
63296 TGG
1 TGG
63299 CTATTAAATG
Statistics
Matches: 35, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
20 6 0.17
21 7 0.20
22 3 0.09
23 3 0.09
24 10 0.29
25 6 0.17
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.32
Consensus pattern (24 bp):
TGGTAAAATAAGCTTACGAGCTTA
Found at i:63277 original size:45 final size:44
Alignment explanation
Indices: 63187--63312 Score: 182
Period size: 45 Copynumber: 2.8 Consensus size: 44
63177 GGTAAGCATG
*
63187 AAAATAAGCTTACGAGCTTATGG-AATAATGGCAAGTATGTTGGT
1 AAAATAAGCTTACGAGCTTATGGTAA-AATGGTAAGTATGTTGGT
*
63231 AAAATAAGCTTACGAGCTTATGGTACAAATGGTAAGTATTTTGGT
1 AAAATAAGCTTACGAGCTTATGGTA-AAATGGTAAGTATGTTGGT
63276 AAAATAAGCTTACGAGCTTATGGCTATTAAATGGTAA
1 AAAATAAGCTTACGAGCTTATGG-TA--AAATGGTAA
63313 AATATTGGAT
Statistics
Matches: 75, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
44 23 0.31
45 40 0.53
46 3 0.04
47 9 0.12
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31
Consensus pattern (44 bp):
AAAATAAGCTTACGAGCTTATGGTAAAATGGTAAGTATGTTGGT
Found at i:73386 original size:13 final size:13
Alignment explanation
Indices: 73361--73394 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
73351 TTAGTATATA
73361 TTAATATTTTATT
1 TTAATATTTTATT
73374 TTAAT-TTTGTATT
1 TTAATATTT-TATT
73387 TTAATATT
1 TTAATATT
73395 AAAAGATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.16
13 14 0.74
14 2 0.11
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (13 bp):
TTAATATTTTATT
Found at i:74071 original size:18 final size:18
Alignment explanation
Indices: 74048--74090 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
74038 CTTTAGATTA
74048 TTTATTTAATTATT-TTCT
1 TTTATTTAATTATTATT-T
*
74066 TTTATTTAATTCTTATTT
1 TTTATTTAATTATTATTT
74084 TTTATTT
1 TTTATTT
74091 TAAAAACAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTTAATTATTATTT
Found at i:74204 original size:33 final size:33
Alignment explanation
Indices: 74167--74244 Score: 147
Period size: 33 Copynumber: 2.4 Consensus size: 33
74157 TTTTTATTTT
*
74167 ATTTTAATTTATCTTTATTTTCCCACTTTTTAA
1 ATTTTATTTTATCTTTATTTTCCCACTTTTTAA
74200 ATTTTATTTTATCTTTATTTTCCCACTTTTTAA
1 ATTTTATTTTATCTTTATTTTCCCACTTTTTAA
74233 ATTTTATTTTAT
1 ATTTTATTTTAT
74245 TCTGTTTTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.64
Consensus pattern (33 bp):
ATTTTATTTTATCTTTATTTTCCCACTTTTTAA
Found at i:80552 original size:53 final size:53
Alignment explanation
Indices: 80472--80574 Score: 188
Period size: 53 Copynumber: 1.9 Consensus size: 53
80462 CAAGTTCATT
80472 AGGTTTATAAGTAAACCTATACTTGTCATTAATCACTGTTCATCAGGTTCGTC
1 AGGTTTATAAGTAAACCTATACTTGTCATTAATCACTGTTCATCAGGTTCGTC
* *
80525 AGGTTTATAAGTAAACCTATATTTGTCATTAATCACTGTTCATTAGGTTC
1 AGGTTTATAAGTAAACCTATACTTGTCATTAATCACTGTTCATCAGGTTC
80575 ATCACGATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (53 bp):
AGGTTTATAAGTAAACCTATACTTGTCATTAATCACTGTTCATCAGGTTCGTC
Found at i:80907 original size:44 final size:44
Alignment explanation
Indices: 80811--80896 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 44
80801 ACTGATATAT
80811 GTATCGATACCAATGTGTAAAAATACACAGCAATATTGATACAC
1 GTATCGATACCAATGTGTAAAAATACACAGCAATATTGATACAC
* * * * * *
80855 GTACCGATACTAGTGTGTAAAATTACACAGTAGTATTGATAC
1 GTATCGATACCAATGTGTAAAAATACACAGCAATATTGATAC
80897 TGATATCGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (44 bp):
GTATCGATACCAATGTGTAAAAATACACAGCAATATTGATACAC
Found at i:81597 original size:29 final size:29
Alignment explanation
Indices: 81557--81622 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 29
81547 ATTTCGGGTT
* *
81557 GGGTTGGGTTTTTTTAAGTT-TGATATTC
1 GGGTAGGGTTTTTTTAAATTGTGATATTC
*
81585 GGGTCGGGTTTTTTTAAATTGTGATATTC
1 GGGTAGGGTTTTTTTAAATTGTGATATTC
81614 GGGTAGGGT
1 GGGTAGGGT
81623 CGGGTTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 18 0.53
29 16 0.47
ACGTcount: A:0.15, C:0.05, G:0.33, T:0.47
Consensus pattern (29 bp):
GGGTAGGGTTTTTTTAAATTGTGATATTC
Found at i:81726 original size:38 final size:38
Alignment explanation
Indices: 81684--81805 Score: 164
Period size: 38 Copynumber: 3.3 Consensus size: 38
81674 TGGGTTCATA
* *
81684 GTCGGGTCGGGTCAGGTTTTTTTAAGTTTGATATTCGG
1 GTCGGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGG
*
81722 GTCGGGTCAGGTCGGGTTTTTTTAAGTGTGATATT---
1 GTCGGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGG
81757 -T-GGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGG
1 GTCGGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGG
*
81793 GTCAGGTTCGGGT
1 GTC-GGGTCGGGT
81806 TTAGGATGAA
Statistics
Matches: 73, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
33 31 0.42
34 1 0.01
37 1 0.01
38 32 0.44
39 8 0.11
ACGTcount: A:0.12, C:0.10, G:0.37, T:0.41
Consensus pattern (38 bp):
GTCGGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGG
Found at i:81727 original size:33 final size:33
Alignment explanation
Indices: 81685--81795 Score: 150
Period size: 33 Copynumber: 3.2 Consensus size: 33
81675 GGGTTCATAG
*
81685 TCGGGTCGGGTCAGGTTTTTTTAAGTTTGATAT
1 TCGGGTCGGGTCAGGTTTTTTTAAGTGTGATAT
81718 TCGGGTCGGGTCAGGTCGGGTTTTTTTAAGTGTGATAT
1 TCGGGTCGGGTCA-----GGTTTTTTTAAGTGTGATAT
* *
81756 TTGGGTCGGGTCGGGTTTTTTTAAGTGTGATAT
1 TCGGGTCGGGTCAGGTTTTTTTAAGTGTGATAT
81789 TCGGGTC
1 TCGGGTC
81796 AGGTTCGGGT
Statistics
Matches: 69, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
33 39 0.57
38 30 0.43
ACGTcount: A:0.13, C:0.10, G:0.35, T:0.42
Consensus pattern (33 bp):
TCGGGTCGGGTCAGGTTTTTTTAAGTGTGATAT
Done.