genome.fa.s5213.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005213.1 Hibiscus syriacus cultivar Beakdansim tig00011800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132276

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--229	105	2.2	105	96	3	433	22	17	26	33	1.96
1028--1071	17	2.9	14	81	18	61	0	0	13	86	0.57
1018--1069	23	2.3	23	83	12	63	0	3	13	82	0.80
1036--1069	6	5.8	6	93	6	61	0	0	14	85	0.60
1027--1072	10	4.5	10	79	15	58	0	0	13	86	0.56
1037--1069	17	1.9	17	100	0	66	0	0	15	84	0.61
11500--11548	19	2.6	18	77	6	53	71	4	4	20	1.19
11743--11805	20	3.1	19	78	17	63	66	1	3	28	1.16
11912--11960	2	24.5	2	95	0	89	48	0	2	48	1.12
15689--15884	37	5.2	36	81	11	200	43	4	8	42	1.56
15838--15862	11	2.3	11	100	0	50	40	8	8	44	1.63
15849--15925	23	3.2	26	80	14	67	46	1	2	49	1.23
15863--15925	22	2.8	22	81	15	76	49	0	1	49	1.10
15862--15925	21	2.8	21	86	13	74	48	0	1	50	1.10
16017--16078	14	4.5	13	74	20	54	33	3	3	59	1.29
17496--17529	17	2.0	17	88	0	50	14	5	0	79	0.91
18482--18613	20	6.6	20	73	9	99	40	23	16	18	1.90
18482--18598	41	2.9	41	76	8	132	39	23	17	19	1.92
18565--18758	20	9.6	20	79	5	203	35	24	20	19	1.95
18565--18758	60	3.2	60	83	0	244	35	24	20	19	1.95
19141--19211	33	2.2	33	94	0	124	11	23	16	47	1.79
19290--19359	19	3.5	20	76	7	81	41	21	24	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19290--19363	20	3.8	20	80	7	89	41	20	24	13	1.88
19302--19408	33	3.1	34	86	11	123	43	20	25	10	1.83
19347--19403	14	3.7	14	75	20	60	43	22	24	8	1.81
19330--19419	33	2.7	33	92	0	144	43	24	23	8	1.82
19302--19389	19	4.9	19	72	17	71	43	21	23	11	1.85
19437--19526	14	5.7	14	72	23	72	8	25	22	43	1.82
19420--19534	33	3.5	33	93	0	203	9	23	20	46	1.79
19451--19512	19	3.5	19	72	20	62	9	24	22	43	1.83
21467--21502	14	2.6	14	95	0	63	33	0	22	44	1.53
21609--21710	19	5.6	19	84	13	151	45	17	22	14	1.85
21725--21779	14	3.6	14	76	21	56	10	21	20	47	1.80
21717--22083	33	10.5	33	86	10	379	13	21	17	46	1.83
21739--22083	19	19.4	19	82	14	461	13	21	17	46	1.83
21739--22083	52	6.5	55	91	7	385	13	21	17	46	1.83
24364--24388	12	2.1	12	100	0	50	0	28	0	72	0.86
25289--25498	20	10.5	20	85	2	215	20	17	25	37	1.94
25465--25562	20	4.8	20	77	3	79	21	18	23	36	1.95
25465--25621	41	3.9	41	70	14	110	18	17	25	38	1.93
28581--28619	2	20.0	2	94	5	71	51	0	0	48	1.00
34607--34635	13	2.1	14	93	6	51	24	0	27	48	1.51
36768--36798	14	2.2	14	100	0	62	19	35	6	38	1.77
37613--37666	24	2.3	23	78	15	56	31	7	3	57	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38565--38644	39	2.1	39	100	0	160	50	2	0	47	1.14
38816--38872	31	1.9	29	82	10	71	42	1	1	54	1.21
41317--41360	21	2.1	21	91	0	70	59	9	22	9	1.56
47519--47560	19	2.2	20	91	4	68	23	7	11	57	1.59
56461--56523	31	2.2	28	81	15	76	22	23	25	28	1.99
56804--56839	17	2.1	18	94	5	65	47	11	0	41	1.39
58283--58424	60	2.4	59	79	9	146	38	17	14	30	1.89
66923--66998	35	2.2	35	90	0	116	38	23	1	36	1.64
67394--67634	130	1.9	130	90	0	392	36	15	12	34	1.86
67568--67614	23	2.1	21	84	7	58	31	14	19	34	1.92
67959--68021	28	2.3	27	78	8	63	46	1	3	49	1.27
68101--68134	16	2.0	18	88	11	54	64	5	2	26	1.30
69102--69234	66	2.0	66	94	0	230	27	24	19	27	1.99
69222--69273	26	2.0	26	84	0	68	32	17	19	30	1.95
69432--69478	22	2.1	22	92	0	76	19	42	17	21	1.89
69421--69478	22	2.7	21	81	2	62	18	41	18	20	1.91
69880--69946	20	3.3	20	85	0	80	14	16	25	43	1.86
69913--69956	20	2.2	20	87	0	61	9	13	22	54	1.67
71541--71581	21	2.0	21	85	0	55	19	17	31	31	1.95
71540--71684	63	2.3	63	92	2	238	23	15	31	29	1.95
71922--72030	20	5.8	20	78	12	106	45	20	19	14	1.85
72031--72085	19	3.0	19	84	12	71	12	16	20	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72036--72087	16	3.1	16	79	15	59	13	17	19	50	1.78
72092--72138	20	2.3	20	85	0	58	23	19	21	36	1.95
72125--72168	20	2.2	20	91	0	70	15	13	20	50	1.78
72655--72749	21	4.5	21	74	17	90	24	33	14	27	1.94
72649--72758	42	2.7	40	77	16	107	22	34	14	28	1.94
72649--72768	21	5.7	21	73	8	75	23	31	17	27	1.97
72697--72788	42	2.2	42	80	3	105	23	33	16	26	1.95
74122--74158	14	2.6	14	100	0	74	29	0	21	48	1.50
74277--74359	20	4.2	20	85	1	89	38	26	18	16	1.92
74393--74469	20	3.8	20	87	0	100	28	22	18	31	1.97
74393--74469	40	1.9	40	89	0	118	28	22	18	31	1.97
74440--74722	140	2.0	140	96	0	521	43	14	13	28	1.83
77947--78034	20	4.3	20	80	8	106	23	17	28	30	1.97
78130--78175	19	2.4	19	85	3	56	21	17	30	30	1.96
78141--78177	19	1.9	19	94	0	65	21	16	29	32	1.95
81145--81199	21	2.6	21	97	0	101	30	18	29	21	1.97
84637--84704	4	17.2	4	82	8	68	69	0	1	29	0.98
84767--84824	29	2.0	29	82	0	71	74	6	0	18	1.04
85533--85637	37	2.8	36	82	5	129	31	13	15	40	1.85
86368--88061	106	16.0	106	90	1	2524	23	18	24	33	1.96
88865--88934	22	3.2	22	93	0	122	22	14	24	38	1.91
89337--89683	172	2.0	171	93	3	597	25	17	20	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93210--93246	19	1.9	19	89	10	58	67	0	24	8	1.17
95248--95341	37	2.5	37	84	0	125	32	11	15	39	1.84
109473--109539	32	2.1	32	88	2	100	17	14	35	31	1.91
109588--109733	46	3.2	44	79	5	157	16	13	24	45	1.84
110237--110277	16	2.6	15	81	11	55	17	14	19	48	1.81
117340--117378	19	1.9	19	85	10	51	5	28	7	58	1.47
125175--125258	38	2.2	38	97	0	159	48	9	17	23	1.76

Tables:   1

The End!