genome.fa.s5214.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005214.1 Hibiscus syriacus cultivar Beakdansim tig00011801_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82050

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9104--9156	18	2.9	18	88	0	70	28	33	18	18	1.95
16901--16943	20	2.2	20	86	0	59	34	20	13	30	1.92
18527--18566	13	3.0	13	81	3	53	62	0	25	12	1.30
26246--26288	20	2.2	20	86	0	59	34	20	13	30	1.92
31449--31518	20	3.6	19	81	16	81	25	21	24	28	1.99
31573--31622	20	2.6	20	81	12	61	34	24	10	32	1.88
33212--33437	120	1.9	123	89	6	363	48	5	4	41	1.48
33930--33965	5	7.2	5	87	0	54	38	5	0	55	1.23
33926--33967	10	4.3	10	90	3	68	38	9	0	52	1.34
33926--33977	15	3.5	15	81	2	61	38	13	0	48	1.43
34881--34981	28	3.7	27	70	17	82	43	0	5	49	1.33
37105--37290	3	61.7	3	84	5	241	61	1	1	36	1.13
37587--38379	113	6.9	113	91	3	1176	28	19	14	37	1.91
37587--38379	347	2.3	338	89	2	1201	28	19	14	37	1.91
38935--39031	9	10.3	9	73	19	65	0	19	0	80	0.71
38935--39026	6	15.0	6	71	24	68	0	19	0	80	0.71
38933--39031	34	2.9	32	80	17	112	0	21	0	78	0.75
38951--39024	20	3.8	20	84	5	82	0	20	0	79	0.73
38940--39030	10	8.9	11	75	14	54	0	19	0	80	0.72
51701--51876	3	58.7	3	85	4	239	61	1	1	35	1.13
52659--52694	15	2.4	16	86	13	51	50	13	11	25	1.75
53443--53625	29	6.4	29	75	5	138	47	16	4	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53484--53584	28	3.6	28	77	11	82	49	11	1	36	1.51
53641--53690	18	2.8	18	78	0	55	12	22	48	18	1.80
58298--58342	20	2.2	20	96	0	81	17	35	15	31	1.92
59889--59931	15	2.9	14	83	16	52	46	13	16	23	1.83
60656--60789	29	4.6	28	78	5	133	44	21	4	29	1.72
60656--60790	58	2.3	58	81	5	148	44	22	4	28	1.72
65013--65072	26	2.3	27	91	8	106	25	21	30	23	1.99
67096--67143	14	3.4	13	83	13	51	45	14	14	25	1.83
67863--67924	29	2.1	29	81	0	70	46	14	4	33	1.66
67911--68042	28	4.7	28	74	13	76	45	15	4	34	1.66
69549--69588	21	1.9	21	89	0	62	47	5	10	37	1.59
69659--69694	18	2.0	18	100	0	72	27	38	11	22	1.88
69826--69875	21	2.4	21	80	3	57	36	32	12	20	1.89
69843--69938	41	2.3	41	82	3	122	37	26	15	20	1.93
70006--70054	20	2.5	20	86	0	80	30	24	16	28	1.96
69957--70108	77	2.0	78	94	1	270	36	21	15	27	1.93
70026--70169	57	2.5	57	88	1	198	34	21	17	27	1.96
70204--70249	20	2.3	20	88	0	74	32	23	15	28	1.95
70268--70306	20	2.0	20	100	0	78	30	25	23	20	1.98
70083--70366	138	2.1	135	80	6	311	34	21	17	27	1.95
70327--70366	20	2.0	21	90	5	64	32	22	12	32	1.91
70204--70520	118	2.7	114	82	4	368	35	21	16	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70362--70440	37	2.1	37	88	0	113	39	22	16	21	1.92
70433--70480	20	2.4	20	85	0	69	33	22	16	27	1.96
70433--70488	20	2.8	20	78	5	60	32	23	14	30	1.94
70453--70581	57	2.3	57	87	2	179	32	20	16	31	1.94
70579--70641	20	3.2	20	73	6	65	26	11	23	38	1.89
74918--74953	18	2.0	18	88	0	54	47	2	13	36	1.58

Tables:   1

The End!