Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005215.1 Hibiscus syriacus cultivar Beakdansim tig00011805_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62326

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9847--9990
44
3.3
44
87
3
148
38
13
19
28
1.90
9873--9995
44
2.7
47
92
2
168
36
13
18
30
1.90
10096--10163
23
2.9
24
84
4
86
22
27
23
26
1.99
12390--12419
12
2.5
12
100
0
60
36
0
23
40
1.55
14826--14901
24
3.3
23
76
5
82
21
25
19
34
1.96
21592--21625
15
2.2
15
89
5
50
61
14
11
11
1.56
26071--26155
24
3.6
24
78
9
86
31
21
22
24
1.98
26125--26199
23
3.3
23
92
0
114
36
24
21
18
1.95
33049--33096
23
2.1
23
84
7
62
29
27
20
22
1.99
39570--39625
2
28.0
2
100
0
112
50
0
0
50
1.00
41439--42209
59
13.1
59
81
4
824
31
19
11
37
1.88
41439--42210
118
6.6
117
87
2
996
31
19
11
37
1.88
41439--42209
177
4.4
177
82
2
908
31
19
11
37
1.88
43295--43324
3
10.0
3
100
0
60
66
0
33
0
0.92
52527--52588
23
2.9
21
85
7
81
20
35
25
17
1.95
56299--57001
59
12.1
59
81
5
749
30
20
11
37
1.88
56299--57001
176
4.0
175
81
6
677
30
20
11
37
1.88

Tables:   1

The End!