genome.fa.s5216.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005216.1 Hibiscus syriacus cultivar Beakdansim tig00011808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116338

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14797--14843	2	23.5	2	100	0	94	51	0	0	48	1.00
17848--17903	20	2.7	21	81	8	62	33	12	25	28	1.92
17938--17975	20	1.9	20	94	0	67	31	18	26	23	1.97
23014--23116	53	1.9	53	90	0	161	35	11	17	34	1.86
36591--36650	31	1.9	31	89	0	93	41	11	13	33	1.80
39952--40011	23	2.4	25	75	8	61	60	3	3	33	1.30
49147--49221	31	2.4	31	88	0	123	44	13	10	32	1.78
50086--50138	21	2.5	22	84	6	74	22	24	18	33	1.97
50124--50240	20	5.8	20	92	0	198	39	23	19	17	1.92
50127--50338	40	5.3	40	78	10	168	33	24	20	21	1.97
50147--50338	60	3.2	60	79	8	169	33	24	20	21	1.97
50227--50353	20	6.3	20	90	0	191	29	25	19	25	1.99
51195--51248	24	2.2	24	86	0	72	24	16	18	40	1.90
53665--53774	20	5.5	20	91	2	177	35	25	22	16	1.95
53817--53885	20	3.8	19	73	21	76	15	21	15	46	1.84
53845--53898	14	3.5	14	73	22	54	11	24	20	44	1.83
53825--53907	33	2.5	33	94	2	139	13	22	18	45	1.84
54024--54060	14	2.6	14	86	0	56	48	21	0	29	1.50
56016--56065	20	2.5	20	90	0	73	36	20	12	32	1.89
56126--56172	20	2.3	20	88	0	67	21	19	21	38	1.94
56105--56208	54	1.9	53	84	5	138	16	18	21	44	1.87
58155--58217	20	3.2	20	93	0	108	22	19	19	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58214--58254	21	2.0	21	95	0	73	41	17	24	17	1.89
58523--58736	111	1.9	111	98	0	410	36	7	11	44	1.69
60236--60272	18	2.1	18	100	0	74	32	24	16	27	1.96
60608--60646	12	3.2	12	81	0	51	33	17	35	12	1.88
75060--75103	21	2.0	24	86	13	67	47	2	0	50	1.13
78781--78821	14	2.8	15	77	7	57	48	7	12	31	1.68
79156--79218	23	2.7	23	80	5	63	46	1	1	50	1.20
79194--79246	20	2.7	20	75	16	56	49	1	0	49	1.12
79203--79358	29	5.5	27	69	19	79	48	1	0	50	1.14
79185--79335	60	2.5	62	79	13	147	48	1	0	49	1.17
79280--79331	20	2.6	19	76	14	52	44	1	1	51	1.23
79320--79363	23	2.0	23	82	13	56	52	0	0	47	1.00
79206--79353	60	2.5	57	74	17	131	47	1	0	50	1.14
79313--79371	31	1.9	31	83	13	77	50	0	0	49	1.00
79593--79645	14	3.8	14	73	9	54	54	15	11	18	1.70
79602--79657	28	2.0	28	96	0	103	60	16	7	16	1.56
80656--80771	60	1.9	60	82	3	144	38	15	11	34	1.83
83790--83836	18	2.7	18	93	3	78	31	8	31	27	1.87
90105--90214	55	2.1	50	82	12	125	56	2	2	38	1.28
96624--96694	34	2.1	34	100	0	142	8	18	22	50	1.73
105074--105102	2	14.5	2	100	0	58	48	0	0	51	1.00
106323--106347	6	4.2	6	100	0	50	0	16	48	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109964--110003	21	1.9	21	89	0	62	45	20	5	30	1.72
116040--116065	13	2.0	13	100	0	52	23	38	30	7	1.83
116035--116099	33	1.9	34	90	3	105	24	35	29	10	1.89
116033--116137	10	9.5	10	67	19	57	24	29	35	10	1.89
116218--116266	10	4.8	10	80	14	64	10	28	36	24	1.88

Tables:   1

The End!