genome.fa.s5217.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005217.1 Hibiscus syriacus cultivar Beakdansim tig00011814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131691

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432--994	116	5.0	116	79	10	614	37	11	3	47	1.56
432--994	228	2.5	220	85	7	717	37	11	3	47	1.56
2228--2280	19	2.5	21	76	11	56	49	9	7	33	1.64
2317--2359	19	2.2	20	84	16	54	48	0	4	46	1.22
5951--6420	121	4.0	121	85	5	647	47	5	10	37	1.61
5951--6384	232	1.9	223	82	10	530	46	5	10	36	1.62
6432--6487	30	1.9	30	89	10	89	58	0	3	37	1.15
6411--6496	29	2.8	31	77	11	99	52	0	4	43	1.22
19395--19495	3	33.7	3	86	0	103	33	5	36	23	1.79
19395--19489	27	3.5	27	89	0	136	33	6	36	23	1.80
19395--19482	24	3.7	24	93	0	149	34	6	36	22	1.81
21523--21579	30	1.9	29	89	3	87	15	22	24	36	1.94
21522--21596	29	2.5	30	82	8	91	18	22	25	33	1.97
21598--21635	12	3.3	12	78	14	53	18	44	23	13	1.85
28815--28911	10	10.0	9	68	14	50	17	25	26	29	1.97
28849--28922	19	3.8	19	92	5	114	16	25	31	27	1.96
28836--28922	38	2.3	39	84	9	117	17	26	28	27	1.97
28934--28971	17	2.2	17	95	0	67	21	47	21	10	1.80
28961--28991	7	4.4	7	91	0	53	19	29	25	25	1.99
31670--31829	65	2.5	66	87	7	222	31	22	17	28	1.97
32119--32157	18	2.2	17	86	8	60	23	17	2	56	1.53
32124--32166	18	2.4	18	100	0	86	23	18	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37292--37402	23	4.9	23	85	2	145	29	25	21	23	1.99
39585--39654	2	35.0	2	100	0	140	50	0	0	50	1.00
40204--40310	45	2.4	45	84	7	137	28	18	19	32	1.96
49189--49213	5	5.0	5	100	0	50	20	60	20	0	1.37
49232--49269	18	2.1	18	95	0	67	18	50	21	10	1.76
49252--49316	8	8.5	8	79	19	68	15	36	26	21	1.93
49203--49252	13	3.8	13	78	0	55	18	42	20	20	1.90
49247--49278	13	2.5	13	94	0	55	18	46	21	12	1.82
49271--49307	7	5.0	7	90	9	56	13	32	27	27	1.94
49271--49316	15	2.9	15	93	6	74	13	32	28	26	1.93
50595--50629	18	1.9	18	88	0	52	54	0	17	28	1.43
52118--52191	31	2.4	30	79	4	85	14	25	32	27	1.95
54225--54249	5	5.0	5	100	0	50	20	60	20	0	1.37
54268--54305	18	2.1	18	95	0	67	18	50	21	10	1.76
54288--54352	8	8.5	8	79	19	68	15	36	26	21	1.93
54239--54288	13	3.8	13	78	0	55	18	42	20	20	1.90
54283--54314	13	2.5	13	94	0	55	18	46	21	12	1.82
54307--54343	7	5.0	7	90	9	56	13	32	27	27	1.94
54307--54352	15	2.9	15	93	6	74	13	32	28	26	1.93
55632--55666	18	1.9	18	88	0	52	54	0	17	28	1.43
57155--57228	31	2.4	30	79	4	85	14	25	32	27	1.95
62579--62626	21	2.3	21	100	0	96	12	43	20	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63733--63757	2	12.5	2	100	0	50	52	48	0	0	1.00
63757--63783	2	13.5	2	100	0	54	51	0	0	48	1.00
71814--71891	20	3.7	21	80	9	70	24	33	25	16	1.96
71855--71897	19	2.2	20	83	4	52	25	30	30	13	1.94
76004--76085	20	4.1	20	74	3	74	35	21	15	26	1.94
76007--76091	41	2.1	40	82	2	98	35	22	16	25	1.95
76065--76170	40	2.7	41	84	8	130	38	23	17	19	1.93
76040--76170	20	6.6	20	76	11	101	38	23	17	19	1.93
76145--76211	20	3.3	20	82	10	73	43	17	17	20	1.88
76575--76662	20	4.3	21	85	4	117	18	20	19	42	1.90
76590--76702	20	5.6	20	88	2	136	17	21	17	43	1.88
76575--76702	41	3.1	41	86	1	150	18	20	17	42	1.89
76587--76702	61	1.9	60	85	1	160	17	21	18	43	1.88
82041--82459	221	1.9	221	90	1	669	41	20	12	25	1.88
84093--84153	30	2.0	30	84	12	81	39	3	19	37	1.68
91638--91680	17	2.7	15	76	16	50	39	4	11	44	1.62
93050--93152	24	4.3	24	83	0	134	15	16	15	52	1.75
93060--93151	48	1.9	48	91	4	150	16	16	15	52	1.76
93048--93152	12	8.8	12	75	4	104	15	17	15	52	1.75
101251--101278	14	2.0	14	100	0	56	7	14	28	50	1.69
102365--102389	10	2.5	10	100	0	50	12	8	20	60	1.57
102567--102599	14	2.4	14	94	0	57	39	6	18	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103049--103132	32	2.7	32	86	1	116	30	25	4	39	1.76
103367--103411	23	2.0	23	86	0	63	20	11	20	48	1.79
103396--103469	23	3.2	23	79	5	69	25	16	14	43	1.86
103474--103523	22	2.3	22	89	0	73	20	14	14	52	1.75
103474--103523	11	4.5	11	79	0	55	20	14	14	52	1.75
103733--103778	12	3.8	12	85	5	58	41	19	21	17	1.90
113387--113502	31	3.7	31	75	7	110	15	27	31	25	1.96
116796--116843	19	2.5	20	82	3	62	52	6	12	29	1.63
118172--118203	11	2.9	11	95	0	55	56	9	0	34	1.32
120779--120885	49	2.2	49	84	0	133	28	20	25	26	1.99
122398--122476	23	3.5	21	81	8	61	29	26	22	21	1.99
122414--122481	23	2.9	23	86	2	100	27	23	25	23	2.00
122629--122659	14	2.3	14	94	5	55	45	29	3	22	1.68
124328--124906	289	2.0	289	95	0	1034	27	21	11	39	1.88
129360--129499	24	5.9	24	85	2	158	28	25	20	25	1.99
129360--129495	71	1.9	71	85	5	186	27	25	20	25	1.99
129363--129499	47	2.9	48	83	2	161	29	25	20	24	1.99
131100--131691	253	2.3	254	94	3	1043	27	23	11	36	1.90

Tables:   1

The End!