genome.fa.s5218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005218.1 Hibiscus syriacus cultivar Beakdansim tig00011816_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87881

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6623--6671	21	2.3	22	82	10	66	36	28	6	28	1.81
7903--7936	12	2.8	12	95	0	59	67	0	29	2	1.05
13457--13588	23	6.0	22	83	8	135	30	25	21	21	1.99
13461--13588	22	5.8	22	85	8	145	31	26	21	20	1.98
13492--13588	23	4.3	22	94	1	140	29	25	22	21	1.99
13492--13588	45	2.2	45	86	3	142	29	25	22	21	1.99
17909--17953	21	2.1	22	83	4	56	51	6	17	24	1.70
25059--25138	30	2.7	30	88	1	126	37	7	13	41	1.73
26517--26575	30	1.9	31	89	3	93	16	33	0	49	1.47
29507--29543	18	2.0	20	84	10	51	35	5	5	54	1.47
29596--29994	191	2.1	193	83	5	488	37	10	12	39	1.78
37825--37864	20	2.1	20	90	9	66	47	0	2	50	1.14
37925--37973	25	1.9	25	83	4	62	53	8	4	34	1.50
38586--38745	5	32.0	5	99	0	230	33	6	0	60	1.22
39989--40023	2	17.5	2	100	0	70	51	0	0	48	1.00
40015--40061	24	2.0	24	87	4	69	68	0	4	27	1.08
40107--40137	2	15.5	2	100	0	62	51	0	0	48	1.00
40848--40880	16	2.1	16	100	0	66	12	24	39	24	1.89
41018--41059	22	1.9	22	85	9	59	52	0	4	42	1.22
41021--41067	13	3.8	13	77	11	53	53	0	2	44	1.12
41023--41082	31	2.0	30	87	9	86	51	0	5	43	1.23
41843--41993	57	2.8	54	82	10	184	25	11	21	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44099--44176	19	4.0	18	78	16	66	5	17	0	76	0.96
44104--44171	30	2.3	30	85	10	86	4	17	0	77	0.92
44104--44177	24	3.1	23	83	11	78	4	16	0	79	0.87
44123--44177	11	5.0	11	84	4	58	1	14	0	83	0.73
54559--54596	17	2.2	18	90	4	60	76	5	7	10	1.15
54603--54707	50	2.2	49	82	11	130	70	3	9	16	1.28
55995--56044	22	2.3	23	83	13	70	52	0	4	44	1.20
57643--57710	22	3.1	22	72	8	66	35	19	20	25	1.96
63516--63582	22	3.0	22	84	0	98	28	22	22	26	1.99
63888--63920	18	1.9	17	88	11	50	51	9	18	21	1.73
69378--69402	13	1.9	13	100	0	50	28	16	0	56	1.41
73624--73654	16	1.9	16	93	0	53	64	19	0	16	1.29
74539--74669	33	3.8	34	79	6	111	42	7	3	46	1.47
74538--74669	35	3.8	35	82	5	142	43	7	3	46	1.47
74631--74717	45	1.9	46	97	2	167	41	13	4	40	1.65
74683--74752	37	1.9	36	94	2	122	42	11	4	41	1.60
74717--74775	23	2.4	25	83	11	86	44	6	6	42	1.57
74725--74774	23	2.2	23	96	0	91	46	8	6	40	1.58
74683--74811	60	2.2	60	87	2	179	41	10	5	42	1.61
74741--74925	37	4.9	37	78	6	169	41	8	4	44	1.56
74748--74983	37	6.2	38	74	14	152	42	9	4	43	1.57
78047--78121	18	4.2	18	82	3	98	24	30	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78038--78121	36	2.4	36	84	6	100	27	29	19	23	1.98
80184--80256	30	2.4	31	75	11	78	31	17	9	41	1.82
83549--83621	18	4.1	18	89	1	112	27	32	20	19	1.97
85702--85781	31	2.6	31	82	4	99	32	16	8	42	1.79
85702--85778	30	2.5	30	82	4	91	31	16	9	42	1.80

Tables:   1

The End!