Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005219.1 Hibiscus syriacus cultivar Beakdansim tig00011818_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68703

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
453--490
20
1.9
20
88
0
58
21
28
18
31
1.97
576--620
20
2.3
19
81
11
54
42
15
8
33
1.78
855--915
18
3.2
18
71
15
50
54
8
9
27
1.62
3869--3905
19
1.9
19
88
0
56
21
29
18
29
1.97
4000--4043
20
2.2
20
91
0
70
36
18
11
34
1.86
4255--4361
51
2.1
51
89
0
160
26
14
14
44
1.83
4656--4705
21
2.4
21
80
3
57
52
2
6
40
1.38
4842--4896
21
2.6
21
79
0
65
41
16
5
36
1.71
6234--6279
19
2.5
18
83
13
58
39
2
2
56
1.24
21555--21626
31
2.3
31
75
0
72
37
8
8
45
1.64
21898--21949
22
2.5
21
81
9
61
40
0
7
51
1.30
27618--27903
13
22.9
13
64
22
68
49
4
3
43
1.39
27640--27792
18
8.4
20
71
19
95
46
5
2
45
1.41
27618--27819
25
8.0
26
69
16
113
48
5
2
43
1.41
27626--27792
90
1.9
89
94
1
298
47
5
2
44
1.39
27803--27940
73
1.9
74
86
1
197
46
2
5
45
1.39
28319--28396
7
11.6
7
77
13
74
50
33
0
16
1.46
28319--28390
20
3.6
19
79
7
81
50
34
0
15
1.44
28320--28383
33
1.9
33
93
0
110
51
34
0
14
1.42
28360--28384
13
1.9
13
100
0
50
52
40
0
8
1.31
28458--28528
37
1.9
37
83
11
92
40
9
11
38
1.74
28517--28591
20
3.8
19
81
16
82
40
6
12
41
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28558--28622
24
2.9
23
82
11
73
41
6
6
46
1.54
28668--28720
21
2.5
21
75
0
61
39
7
7
45
1.61
28787--28937
6
24.3
6
71
19
57
47
1
1
49
1.21
28767--28859
31
3.1
30
78
15
104
45
3
2
49
1.30
28816--28939
15
8.2
15
72
24
93
48
0
0
50
1.12
28852--28931
33
2.5
34
84
8
105
50
0
0
50
1.00
28822--28943
27
4.7
25
79
19
103
50
0
0
48
1.12
29383--29418
15
2.4
15
86
13
56
22
22
0
55
1.44
29779--29836
18
2.9
20
72
23
59
27
6
15
50
1.70
29772--29865
38
2.4
38
89
3
134
31
7
13
46
1.71
29772--29835
22
3.1
22
70
25
75
29
6
15
48
1.70
32000--32049
23
2.1
24
92
3
84
48
6
0
46
1.27
32088--32114
13
2.1
13
100
0
54
44
0
0
55
0.99
32312--32374
16
3.9
16
93
0
99
47
12
19
20
1.81
32308--32378
32
2.2
32
94
0
124
45
14
21
19
1.85
38493--38598
31
3.4
30
78
11
97
31
16
17
33
1.93
54727--54776
23
2.1
24
88
3
75
28
4
0
68
1.08
56804--56837
13
2.6
14
90
9
54
14
5
0
79
0.91
59938--60008
14
4.7
14
74
16
70
36
0
15
47
1.46
59901--60008
47
2.3
47
96
0
198
37
0
15
45
1.53
64254--64322
14
5.3
13
74
17
63
39
1
0
59
1.06
64248--64318
18
3.8
18
75
21
65
38
1
0
60
1.06

Tables:   1

The End!