genome.fa.s522.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000522.1 Hibiscus syriacus cultivar Beakdansim tig00001000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83534

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2824--2961	54	2.6	54	88	0	195	31	14	19	34	1.92
2824--3013	54	3.5	54	84	2	186	31	14	20	34	1.92
3088--3412	82	4.1	81	77	10	352	36	13	21	27	1.92
3241--3371	70	1.9	70	90	0	208	36	14	20	28	1.92
6534--6559	8	3.2	8	100	0	52	0	38	0	61	0.96
7577--7749	54	3.2	54	83	1	204	31	14	17	36	1.90
7826--8467	82	7.9	82	84	3	827	37	12	21	28	1.91
8218--8451	74	3.1	75	82	6	283	35	11	22	30	1.89
8569--8658	45	2.0	45	88	0	135	44	12	20	23	1.84
17874--18178	133	2.3	135	81	5	334	35	19	16	28	1.93
19268--19311	13	3.5	13	93	3	72	20	2	0	77	0.88
19487--19557	29	2.6	27	80	8	79	22	11	2	63	1.40
19486--19571	28	3.1	26	72	20	68	20	11	4	62	1.46
19515--19579	27	2.4	27	77	10	71	23	12	4	60	1.51
25895--25927	16	2.1	16	100	0	66	39	0	42	18	1.50
33806--35009	4	303.0	4	95	1	1929	24	2	25	48	1.62
39813--39844	2	16.0	2	100	0	64	50	0	0	50	1.00
41392--41489	46	2.1	46	83	5	117	38	12	6	42	1.67
43991--44088	20	4.8	20	77	3	88	36	23	18	21	1.95
43932--44088	41	3.9	41	70	11	126	38	25	17	18	1.93
44055--44264	20	10.5	20	84	2	197	37	24	17	20	1.93
44944--44990	24	2.0	24	87	8	69	25	14	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45165--45189	12	2.1	12	100	0	50	72	0	28	0	0.86
47466--47757	19	16.7	19	79	18	323	46	18	21	14	1.84
47466--47719	71	3.6	71	89	8	341	46	18	20	13	1.83
47533--47757	90	2.6	89	92	5	363	46	17	21	14	1.84
47680--47733	14	3.6	14	79	18	63	46	20	22	11	1.82
47494--47719	52	4.2	55	86	11	305	46	17	21	14	1.83
47748--47848	18	5.6	19	81	14	133	15	23	17	42	1.88
47955--47991	14	2.6	14	91	0	65	45	21	0	32	1.52
49960--50013	14	3.5	14	75	22	54	46	22	20	11	1.82
49904--50031	19	7.3	19	75	19	116	46	24	18	10	1.81
49941--50031	33	2.8	33	93	1	157	46	21	20	10	1.82
50049--50105	14	3.7	14	77	20	60	10	21	22	45	1.82
50033--50124	33	2.8	33	89	0	139	9	18	23	47	1.78
50033--50145	19	6.5	18	71	20	89	8	17	24	48	1.76
50033--50161	19	7.3	19	68	23	84	10	17	25	47	1.78
50209--50674	93	5.1	93	97	1	877	46	18	12	22	1.83
50209--50674	183	2.5	184	97	2	864	46	18	12	22	1.83
52360--52421	20	3.2	20	79	4	81	43	19	24	12	1.86
52405--52461	14	3.7	14	75	20	60	43	22	24	8	1.81
52358--52478	33	3.5	33	89	6	170	45	20	23	10	1.82
52358--52483	19	7.1	19	71	18	92	44	20	23	11	1.83
52495--52550	14	3.7	14	73	17	58	8	23	23	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52534--52608	19	3.8	20	80	5	89	13	24	20	42	1.87
52479--52596	32	3.4	33	87	9	148	10	22	22	44	1.82
52687--52756	33	2.2	32	89	2	104	47	15	24	12	1.81
52936--52989	21	2.5	22	78	3	65	20	16	38	24	1.92
53133--53344	20	10.6	20	82	4	214	19	20	24	35	1.95
53133--53325	60	3.2	60	82	2	244	19	20	24	35	1.96
53291--53344	19	2.8	19	97	2	99	12	20	22	44	1.85
53291--53409	41	2.9	41	78	7	118	20	19	22	37	1.94
56098--56131	2	17.5	2	93	6	61	50	0	0	50	1.00
58616--58646	7	4.4	7	100	0	62	0	45	0	54	0.99

Tables:   1

The End!