Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005220.1 Hibiscus syriacus cultivar Beakdansim tig00011820_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106090

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7756--7809
20
2.7
20
94
0
90
22
18
18
40
1.91
20308--20387
20
3.8
21
76
12
74
25
33
25
16
1.95
20319--20388
21
3.2
21
76
11
70
22
38
22
15
1.92
23759--23843
33
2.6
32
87
5
125
11
8
37
42
1.72
24415--24477
16
3.8
16
83
6
72
28
26
4
39
1.76
24430--24480
18
2.9
18
85
5
70
29
29
3
37
1.75
24945--24990
23
2.0
23
82
0
56
19
19
8
52
1.72
27673--27841
34
5.0
34
71
7
146
32
10
9
47
1.69
27725--27859
67
2.0
67
98
0
261
34
10
8
46
1.69
30434--30560
51
2.5
51
80
2
130
16
31
27
24
1.96
30848--30895
16
3.1
16
78
3
53
22
2
6
68
1.23
36304--36349
18
2.6
17
86
10
65
60
2
4
32
1.28
36658--36736
29
2.7
29
94
0
131
37
11
21
29
1.88
37861--37904
14
3.1
14
93
0
70
18
9
11
61
1.55
37838--37889
24
2.2
24
82
0
59
11
11
17
59
1.60
38227--38350
26
4.7
25
70
23
78
44
1
1
52
1.20
43194--43230
18
2.1
18
90
10
58
32
5
2
59
1.34
53692--53809
59
2.0
59
98
0
227
19
22
17
40
1.91
54171--54261
20
4.9
20
67
22
65
35
5
14
45
1.68
54170--54319
53
2.9
52
94
3
257
33
6
12
48
1.64
54276--54315
20
2.0
20
90
9
64
37
5
10
47
1.59
66247--66301
23
2.4
23
100
0
110
25
18
27
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72871--72947
3
25.7
3
75
0
73
5
3
61
29
1.36
75125--75180
23
2.5
22
80
5
60
71
1
10
16
1.22
76047--76117
37
1.9
37
94
0
124
30
11
15
42
1.82
76660--76913
84
3.1
84
78
8
297
24
22
25
28
1.99
80791--80856
29
2.3
30
84
10
84
75
3
6
15
1.11
80920--80945
3
8.7
3
100
0
52
69
0
0
30
0.89
81634--81742
37
2.9
37
94
0
191
33
11
13
41
1.81
84968--85193
113
2.0
113
97
0
425
23
16
19
40
1.90
86359--86388
15
1.9
16
93
6
53
10
36
0
53
1.35
87203--87253
18
2.8
19
79
8
70
58
0
7
33
1.27
87208--87248
15
2.7
15
84
0
55
58
0
4
36
1.20
87772--87807
12
3.2
12
85
14
51
50
5
19
25
1.69
87913--87998
43
2.0
43
90
0
136
36
23
9
31
1.86
90308--90345
2
19.0
2
94
0
58
50
5
0
44
1.24
90550--90586
3
12.7
3
83
16
51
67
0
0
32
0.91
90550--90586
8
4.2
9
83
16
51
67
0
0
32
0.91
90550--90579
11
2.7
11
100
0
60
70
0
0
30
0.88
95508--95534
2
13.5
2
100
0
54
51
0
0
48
1.00
96087--96512
144
2.9
143
83
3
512
21
13
19
45
1.84
97204--97353
75
2.0
74
81
10
171
24
16
12
46
1.81
103884--103936
21
2.5
21
84
0
70
20
26
18
33
1.96
103926--103978
20
2.7
20
96
0
97
37
22
20
18
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104181--104241
22
2.8
22
89
0
95
26
37
14
21
1.92
104593--104630
20
1.9
20
100
0
76
26
21
21
31
1.98
104598--104665
20
3.4
20
85
0
73
17
17
23
41
1.90
104632--104675
20
2.2
20
87
0
61
11
15
20
52
1.74

Tables:   1

The End!