genome.fa.s5221.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005221.1 Hibiscus syriacus cultivar Beakdansim tig00011821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84185

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8165--8297	60	2.2	59	85	6	169	34	15	16	33	1.91
8520--8633	59	1.9	59	87	5	169	38	19	15	26	1.92
14514--14931	43	9.8	41	71	12	188	48	7	19	24	1.74
14514--14869	43	8.3	44	72	15	210	48	7	21	23	1.75
14559--14869	131	2.4	129	89	6	470	47	7	21	22	1.75
14739--14927	85	2.2	86	80	6	197	49	6	19	24	1.73
14854--15024	86	2.0	88	83	11	219	53	5	15	25	1.64
14904--15024	45	2.7	44	81	5	145	52	4	17	25	1.65
14859--15064	86	2.4	84	79	12	199	56	6	12	25	1.59
17501--17543	22	2.0	22	86	9	61	4	37	0	58	1.19
20144--20189	23	2.0	23	95	0	83	63	19	4	13	1.46
20171--20245	39	1.9	39	88	0	114	41	16	6	36	1.74
20651--20874	45	5.0	45	78	4	209	37	13	10	37	1.79
20651--20874	90	2.5	89	81	5	245	37	13	10	37	1.79
20634--20882	46	5.5	45	77	4	232	37	14	9	37	1.80
21756--22044	145	2.0	146	82	2	357	32	22	22	21	1.98
29363--29406	11	4.2	10	88	5	52	88	4	6	0	0.62
30442--30515	32	2.3	32	85	0	94	33	12	22	31	1.91
30790--30913	43	2.9	43	83	0	158	29	29	19	20	1.97
31130--31608	133	3.6	134	88	3	723	31	22	18	27	1.97
31493--31830	111	3.0	112	91	4	531	30	24	17	27	1.97
32594--32873	145	1.9	145	82	4	350	31	18	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32776--33103	146	2.3	146	79	6	346	32	20	25	21	1.97
41359--41398	21	1.9	21	89	0	62	25	40	25	10	1.86
43659--43710	13	3.7	13	72	18	50	40	13	3	42	1.62
43653--43710	30	1.9	30	100	0	116	37	13	3	44	1.61
46914--47071	21	7.8	20	72	7	86	39	25	15	18	1.91
47058--47307	20	12.5	20	81	5	247	36	26	16	20	1.94
47990--48036	24	2.0	24	87	8	69	25	14	21	38	1.92
50774--50830	14	3.7	14	77	20	60	45	22	21	10	1.82
50755--50847	33	2.8	33	95	0	168	47	21	20	10	1.80
50718--50847	19	7.3	19	76	17	127	46	23	18	10	1.80
50850--50976	19	7.2	19	74	17	121	9	16	28	45	1.78
50850--50939	33	2.7	33	93	3	146	8	17	27	45	1.78
51024--51491	93	5.1	93	98	0	913	45	19	12	22	1.83
51024--51491	185	2.5	186	98	1	913	45	19	12	22	1.83
53195--53284	14	5.7	14	69	23	63	44	22	23	10	1.82
53187--53301	33	3.5	33	97	0	221	46	20	22	10	1.80
53209--53306	19	5.7	19	69	22	90	44	21	22	11	1.83
53318--53374	14	3.7	14	75	20	60	8	24	22	43	1.81
53302--53382	33	2.5	33	95	0	144	8	22	22	46	1.78
53359--53434	21	3.7	21	83	3	109	11	25	17	46	1.82
53358--53435	41	1.9	41	97	0	147	12	25	16	44	1.83
53514--53584	33	2.2	33	89	0	106	49	18	21	11	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53766--53819	22	2.5	21	78	3	63	20	16	38	24	1.92
53966--54119	20	7.7	20	79	7	159	18	17	27	37	1.93
53965--54119	40	3.8	40	80	4	177	18	17	27	37	1.93
54106--54188	21	4.0	21	73	6	78	25	16	24	33	1.96
54086--54184	42	2.4	43	77	11	100	21	18	23	37	1.94
55787--55913	58	2.2	57	84	1	164	38	11	10	39	1.76
55915--56087	57	3.0	58	88	4	235	42	10	8	38	1.70
55791--56049	136	1.9	137	86	4	371	41	10	10	38	1.73
55934--56089	58	2.7	57	90	3	235	43	11	8	36	1.71
58773--58815	20	2.2	20	83	8	52	37	6	2	53	1.41
60334--60583	124	2.0	124	86	4	344	47	12	16	23	1.80
60838--60912	22	3.7	20	76	16	73	17	21	34	26	1.95
66505--66561	20	2.7	22	84	10	75	24	26	17	31	1.97
73589--73744	81	1.9	82	82	1	197	37	15	20	26	1.92
74084--74256	54	3.2	53	90	4	249	27	17	20	34	1.95
74085--74288	108	1.9	107	80	3	239	29	16	19	34	1.94
74265--74475	59	3.6	59	85	3	282	33	9	18	38	1.83
74380--74507	57	2.2	58	82	6	145	40	6	15	37	1.73
74822--75024	68	3.0	68	91	1	318	30	15	24	29	1.96
75040--75191	45	3.3	45	81	2	160	47	9	17	26	1.77
78307--78334	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!