Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005224.1 Hibiscus syriacus cultivar Beakdansim tig00011827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88977

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10021--10059
16
2.4
16
95
0
69
25
28
10
35
1.89
14631--14685
21
2.6
21
100
0
110
32
14
18
34
1.91
14651--14739
38
2.3
39
88
1
135
30
12
21
35
1.90
20857--20913
7
8.3
7
81
11
57
73
0
5
21
1.02
20952--20994
18
2.4
18
88
7
61
74
0
2
23
0.93
23731--23762
11
2.9
11
95
0
55
75
3
9
12
1.16
26710--26750
8
5.1
8
85
11
57
82
0
0
17
0.66
26709--26783
17
4.5
17
70
8
64
74
1
4
20
1.05
26711--26783
8
9.1
8
75
14
53
75
1
4
19
1.04
26822--26864
18
2.4
18
92
7
70
74
0
4
20
1.00
29523--29573
25
2.0
25
100
0
102
15
23
7
52
1.68
29613--29653
15
2.7
15
84
3
55
9
17
2
70
1.25
32953--32991
18
2.2
18
85
0
51
28
12
10
48
1.74
45172--45239
23
3.0
22
72
20
59
26
8
11
52
1.67
45336--45368
14
2.4
14
90
5
50
12
18
0
69
1.18
45945--45978
16
2.1
16
88
0
50
17
23
0
58
1.38
49049--49204
44
3.6
43
78
5
143
33
21
14
30
1.93
57761--57802
13
3.2
13
86
0
57
28
16
19
35
1.93
67271--67360
25
3.6
25
77
3
99
45
16
21
16
1.85
68616--68714
44
2.2
44
82
3
119
34
19
22
24
1.96
68616--68739
44
2.9
42
80
8
108
30
18
22
28
1.97
70143--70177
16
2.2
16
100
0
70
48
11
0
40
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70830--70868
20
2.0
20
85
10
53
15
12
5
66
1.41
77411--77444
18
1.9
18
94
5
61
47
5
5
41
1.52
84527--84616
25
3.6
25
82
7
103
46
21
17
14
1.83
86475--86515
21
2.0
21
100
0
82
48
9
17
24
1.76

Tables:   1

The End!