Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005225.1 Hibiscus syriacus cultivar Beakdansim tig00011831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75367

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5132--5221
29
2.8
33
73
13
98
37
7
11
43
1.69
5132--5234
29
3.3
31
77
8
93
36
9
10
42
1.73
9598--9665
35
1.9
35
82
11
86
48
19
11
20
1.80
15915--15963
23
2.0
25
88
7
75
26
4
6
63
1.36
19645--19743
9
10.6
9
72
16
67
75
1
8
15
1.08
19623--19738
23
5.1
23
75
11
89
74
1
8
15
1.14
19654--19743
38
2.4
39
87
10
125
76
1
6
15
1.04
19703--19729
4
6.8
4
100
0
54
77
0
0
22
0.76
19930--19955
2
13.0
2
100
0
52
50
0
0
50
1.00
19978--20017
14
2.9
13
92
7
62
75
0
7
17
1.03
21842--22118
118
2.3
120
85
5
353
25
17
23
33
1.96
22974--23014
6
6.5
6
83
10
55
0
17
2
80
0.82
22974--23014
13
3.2
12
83
10
55
0
17
2
80
0.82
26112--26180
23
3.0
23
86
0
102
33
24
24
17
1.96
35807--35941
9
14.8
9
71
17
57
74
2
8
14
1.14
35798--35925
48
2.8
44
75
16
116
75
2
8
14
1.14
35839--35941
48
2.1
47
81
16
115
75
0
9
13
1.09
36139--36183
14
3.2
14
93
0
72
75
0
6
17
1.01
36568--36613
21
2.2
21
100
0
92
21
15
32
30
1.94
41858--41899
22
2.0
21
86
9
59
33
7
0
59
1.25
43417--43476
24
2.6
24
79
12
63
65
1
5
28
1.23
43448--43485
16
2.4
16
82
4
51
63
0
5
31
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43657--43702
23
2.1
23
84
8
60
58
0
4
36
1.18
43685--43714
2
15.0
2
92
0
51
53
0
0
46
1.00
44167--44257
35
2.5
36
82
7
103
29
15
14
40
1.86
44727--45696
98
9.3
102
77
10
751
21
20
24
32
1.98
44730--45696
202
4.7
202
83
7
1082
21
20
24
32
1.97
45971--46344
37
10.9
37
68
20
213
36
12
21
29
1.91
46038--46344
36
8.9
36
71
15
220
37
13
21
28
1.91
45971--46326
102
3.5
102
90
1
545
35
12
21
30
1.90
46094--46253
50
3.2
50
63
7
124
36
13
19
30
1.90
47200--47250
22
2.3
22
96
0
93
25
11
27
35
1.91
47860--47905
20
2.2
21
84
3
58
2
10
6
80
0.98
47870--47925
20
2.8
20
83
8
60
0
16
7
76
0.99
52260--52293
16
2.1
16
94
0
59
58
0
5
35
1.22
52462--52545
11
7.3
11
75
15
62
58
1
3
36
1.23
52971--53044
35
2.1
36
87
10
107
29
16
13
40
1.86
60717--60759
20
2.1
20
86
4
59
41
0
4
53
1.21
60726--60770
15
2.9
15
80
9
54
40
2
4
53
1.33
60869--60901
15
2.2
15
89
10
50
27
0
3
69
1.03

Tables:   1

The End!