genome.fa.s5226.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005226.1 Hibiscus syriacus cultivar Beakdansim tig00011834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67138

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315--1808	248	2.0	249	89	7	774	28	8	13	49	1.71
1898--1954	21	2.6	23	83	13	84	21	14	12	52	1.73
6834--6945	59	1.9	59	87	3	163	34	20	15	29	1.93
7439--7480	20	2.1	20	86	0	57	30	30	7	30	1.84
8028--8066	20	2.0	20	100	0	78	51	20	12	15	1.76
8097--8160	20	3.2	20	86	2	74	15	12	17	54	1.71
9655--9753	42	2.4	42	91	0	153	28	33	20	18	1.96
9913--9962	21	2.4	21	80	6	57	18	14	36	32	1.90
10309--10438	21	6.2	21	78	8	122	20	39	15	24	1.91
11588--11654	22	3.0	22	100	0	134	26	26	26	19	1.99
11874--11932	30	1.9	31	89	3	93	33	23	6	35	1.82
11947--12014	29	2.3	29	84	0	82	36	16	10	36	1.82
12290--12442	69	2.2	69	87	1	209	18	28	26	26	1.98
12422--12464	21	2.0	21	86	0	59	16	25	27	30	1.97
18495--18561	22	3.0	22	100	0	134	26	26	26	19	1.99
18781--18839	30	1.9	31	89	3	93	33	23	6	35	1.82
18854--18921	29	2.3	29	84	0	82	36	16	10	36	1.82
19196--19348	68	2.2	69	86	2	202	18	27	27	26	1.98
19328--19370	21	2.0	21	86	0	59	16	25	27	30	1.97
20880--20949	30	2.3	30	95	0	122	22	14	27	35	1.93
20970--20999	16	1.9	15	93	6	51	20	0	13	66	1.24
27294--27331	20	1.9	20	88	0	58	13	26	36	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33537--33606	20	3.5	20	72	14	63	37	12	22	27	1.91
33537--33628	40	2.3	40	80	0	112	39	10	21	28	1.87
33649--33741	20	4.6	20	73	7	62	31	15	20	33	1.93
33751--33789	20	1.9	21	89	5	62	33	10	25	30	1.89
36126--36176	21	2.4	22	83	6	61	70	3	3	21	1.20
42231--42282	22	2.3	23	86	6	70	48	21	13	17	1.81
42231--42282	12	4.5	12	76	9	54	48	21	13	17	1.81
42925--42969	23	1.9	23	86	13	65	42	13	6	37	1.70
44054--44083	8	3.8	8	95	0	51	23	26	0	50	1.50
44557--44601	23	2.0	23	86	0	63	80	4	2	13	0.97
44635--44660	9	2.9	9	100	0	52	69	0	19	11	1.18
45950--46109	37	4.2	37	86	4	196	44	10	3	41	1.56
45983--46125	39	3.7	39	82	11	181	43	9	2	44	1.50
46398--46880	200	2.4	200	84	1	626	27	19	19	33	1.96
46933--47399	86	5.4	86	87	0	630	24	22	23	29	1.99
47037--47253	42	5.1	42	64	16	122	23	24	22	29	1.99
48630--48916	99	2.9	99	89	0	403	32	18	14	33	1.92
52817--52842	13	2.0	13	100	0	52	76	0	7	15	0.99
54064--54107	14	3.3	13	87	12	63	61	0	6	31	1.22
54159--54227	28	2.4	30	85	9	90	43	7	2	46	1.46
55196--55220	3	8.3	3	100	0	50	0	32	0	68	0.90
56712--56969	120	2.2	120	84	0	338	29	27	24	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58999--59041	3	15.3	3	85	9	56	69	0	27	2	1.00
61319--61350	16	2.0	16	93	0	55	12	21	18	46	1.82

Tables:   1

The End!