genome.fa.s5228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005228.1 Hibiscus syriacus cultivar Beakdansim tig00011838_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52850

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4306--4544	49	4.9	49	85	0	271	23	20	15	41	1.90
12131--12166	16	2.2	17	90	5	56	69	2	13	13	1.30
13064--13106	20	2.3	19	84	8	52	27	2	9	60	1.40
13836--13865	15	1.9	16	93	6	53	10	3	0	86	0.67
15701--15752	21	2.5	21	93	0	86	21	25	13	40	1.89
15792--15867	20	3.8	20	92	1	127	19	21	14	44	1.86
15772--15899	40	3.2	39	80	8	143	24	21	14	40	1.89
16893--17044	64	2.4	64	84	4	193	51	14	1	32	1.54
18386--18498	21	5.4	21	74	4	93	23	20	34	22	1.97
18392--18508	42	2.8	42	86	0	153	24	17	35	21	1.95
18879--18928	21	2.4	21	93	0	82	32	28	14	26	1.94
20983--21022	22	1.9	21	90	10	64	25	12	42	20	1.86
20989--21040	22	2.4	22	86	0	68	25	13	40	21	1.89
22951--23025	19	3.8	20	76	11	68	30	26	14	28	1.95
23049--23113	20	3.2	20	85	8	96	38	23	20	18	1.93
22949--23113	40	4.1	41	72	11	119	33	24	16	25	1.96
23747--23845	40	2.5	39	86	3	128	30	11	21	37	1.88
25123--25338	20	10.7	21	88	1	250	22	22	22	31	1.98
25123--25338	60	3.6	60	87	5	283	22	22	22	31	1.98
25324--25364	21	2.0	21	85	0	55	31	12	24	31	1.92
25928--26434	254	2.0	257	90	2	808	28	13	18	40	1.88
26752--26798	18	2.7	18	83	3	60	27	27	6	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32779--32857	3	26.0	3	84	2	95	40	1	0	58	1.06
36593--36635	14	3.1	14	82	0	59	27	16	2	53	1.55
44822--44897	22	3.5	22	87	3	100	32	15	13	38	1.86
45333--46404	113	9.5	113	93	2	1698	38	14	19	27	1.90
45793--45837	23	2.0	23	82	8	56	51	8	24	15	1.72
45333--46404	451	2.4	448	92	3	1760	38	14	19	27	1.90
46666--46755	3	30.0	3	88	0	135	37	1	0	61	1.04

Tables:   1

The End!