genome.fa.s5229.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005229.1 Hibiscus syriacus cultivar Beakdansim tig00011839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91946

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132--226	48	2.0	49	87	6	140	28	11	33	26	1.91
132--246	48	2.4	49	82	7	137	29	11	33	26	1.91
3037--3092	29	1.9	29	96	0	103	39	14	16	30	1.88
4015--4128	60	1.9	60	83	3	149	35	12	15	36	1.85
4825--5486	43	15.5	43	78	6	627	26	18	6	48	1.72
4825--5492	85	7.8	85	77	8	619	26	18	6	48	1.71
4799--5478	128	5.3	126	82	6	696	26	18	6	48	1.72
6304--6480	38	4.6	38	75	12	164	36	11	19	33	1.87
12949--13016	27	2.5	27	87	0	100	66	1	20	11	1.32
15246--15353	55	2.0	55	98	0	207	38	22	7	31	1.82
15252--15341	30	3.2	30	67	20	93	38	23	7	30	1.83
24881--24929	23	2.2	23	85	3	64	83	10	6	0	0.80
24894--24933	8	5.1	8	87	6	64	87	2	10	0	0.63
24894--24933	15	2.6	16	88	4	64	87	2	10	0	0.63
24895--24945	15	3.3	15	79	17	50	84	1	13	0	0.71
26734--27710	233	4.2	233	89	1	1438	31	17	16	34	1.92
26734--27710	465	2.1	466	89	1	1476	31	17	16	34	1.92
27581--27682	42	2.5	41	85	1	141	23	23	22	30	1.99
27887--27925	3	13.0	3	100	0	78	33	0	0	66	0.92
28670--28717	21	2.3	21	96	0	87	18	22	22	35	1.96
36924--36962	17	2.2	18	86	4	53	20	17	20	41	1.91
38302--38351	20	2.6	18	84	12	55	32	12	4	52	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41458--41506	19	2.6	18	83	9	53	32	10	4	53	1.54
46677--46717	22	1.9	22	90	5	66	17	9	41	31	1.82
46830--46877	20	2.4	20	86	6	62	27	16	18	37	1.92
47362--47600	77	3.1	77	84	1	284	37	15	9	37	1.80
48276--48322	24	1.9	25	86	4	69	53	0	2	44	1.12
49193--49238	22	2.0	23	83	4	58	19	17	10	52	1.74
51891--52143	101	2.5	100	84	3	321	52	17	10	19	1.73
53241--53299	32	1.9	30	82	6	73	28	1	8	61	1.35
53398--53434	18	2.0	19	89	5	58	67	0	16	16	1.23
53516--53548	17	1.9	17	88	11	50	33	3	3	60	1.27
55033--55078	23	2.0	23	83	8	58	19	6	8	65	1.43
61531--61732	76	2.7	76	90	1	309	20	22	27	29	1.98
62266--62456	76	2.5	76	90	1	305	20	23	26	29	1.99
63112--63150	18	2.2	18	90	0	60	56	23	5	15	1.59
65154--65230	23	3.6	22	77	8	79	22	22	33	22	1.97
71844--72298	37	12.1	37	75	18	379	46	6	1	45	1.40
71873--71969	11	8.1	11	66	20	52	42	7	2	48	1.42
72011--72045	2	17.5	2	100	0	70	48	0	0	51	1.00
71972--72080	54	2.1	52	89	3	164	45	4	0	48	1.29
72038--72159	26	5.0	25	66	20	80	48	6	1	43	1.38
71946--72115	93	1.8	92	93	1	295	46	5	1	46	1.34
72072--72148	32	2.4	32	85	8	95	46	6	2	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72170--72221	26	1.9	26	92	7	86	46	5	0	48	1.26
72262--72314	25	2.1	26	82	10	65	37	5	5	50	1.50
72931--73164	123	1.9	122	91	0	378	24	15	20	38	1.92
73547--73632	3	29.7	3	77	15	83	38	3	0	58	1.15
73546--73632	8	10.8	8	86	11	101	39	3	0	57	1.16
73546--73632	14	6.0	14	77	15	79	39	3	0	57	1.16
74487--74539	23	2.3	23	96	0	97	20	26	26	26	1.99
74771--74806	2	18.0	2	100	0	72	50	0	0	50	1.00
75458--75749	91	3.2	92	75	4	268	26	17	31	23	1.97
76497--76591	3	31.0	3	89	4	145	36	0	0	63	0.95
80959--81255	42	7.2	42	71	13	143	35	18	19	26	1.95
80976--81133	42	3.8	41	78	12	171	34	20	21	24	1.97
81160--81313	41	3.8	40	83	5	177	37	16	16	29	1.91
81116--81320	83	2.5	83	82	10	244	36	16	15	31	1.90
81159--81313	82	1.9	81	88	7	233	37	16	16	29	1.91
81385--81728	41	8.3	41	80	4	359	27	18	19	34	1.95
81385--81730	166	2.1	166	82	4	414	26	18	19	34	1.95
84425--84699	43	6.4	43	81	3	248	28	20	21	29	1.98
84935--84997	33	1.9	33	83	6	83	31	11	23	33	1.90
85451--85476	11	2.4	11	100	0	52	46	0	15	38	1.46
85854--85935	33	2.5	33	93	0	137	32	9	20	36	1.86
85850--85972	33	3.7	32	79	16	133	34	8	21	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87578--87612	3	11.7	3	100	0	70	68	0	0	31	0.90
89825--90072	86	2.9	87	94	2	439	40	12	15	31	1.84
90067--90774	195	3.6	197	77	9	686	31	15	14	38	1.88

Tables:   1

The End!