genome.fa.s523.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000523.1 Hibiscus syriacus cultivar Beakdansim tig00001005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88449

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1461--1523	29	2.2	29	94	5	110	60	11	7	20	1.55
8933--8973	20	2.0	20	85	0	55	65	2	0	31	1.05
24035--24122	44	2.0	44	95	0	158	34	11	14	39	1.82
36938--36984	21	2.3	20	85	3	58	38	8	21	31	1.83
40977--41017	18	2.2	19	86	4	57	29	14	34	21	1.93
42369--42440	30	2.4	30	92	0	117	30	25	20	23	1.99
42428--42550	31	3.9	31	80	10	117	31	17	20	30	1.96
44727--44800	21	3.5	21	98	0	139	18	17	29	33	1.94
47545--47604	30	2.0	30	90	0	93	30	15	23	31	1.95
52030--52092	30	2.1	30	93	0	108	28	15	25	30	1.96
52750--52799	26	2.0	25	84	4	64	42	6	14	38	1.70
54244--54612	20	18.5	20	85	4	458	34	26	18	20	1.96
55509--55533	12	2.1	12	100	0	50	72	0	28	0	0.86
57804--58102	19	17.4	19	76	20	304	46	18	20	14	1.83
57871--58102	33	6.7	33	79	16	224	46	18	20	14	1.84
57836--58102	52	5.2	51	89	6	382	46	17	21	14	1.83
58130--58231	19	5.6	19	85	12	151	14	23	17	44	1.86
58337--58372	13	2.6	14	86	4	56	47	22	0	30	1.52
60347--60403	14	3.7	14	77	20	60	45	22	21	10	1.82
60328--60420	33	2.8	33	95	0	168	47	21	20	10	1.80
60291--60425	19	7.6	19	76	16	128	45	23	19	11	1.82
60421--60549	19	7.3	19	74	17	116	9	17	27	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60421--60512	33	2.8	33	91	3	150	8	18	27	45	1.78
60581--61046	93	5.0	93	98	0	909	46	19	12	21	1.83
60581--61046	185	2.5	186	98	0	909	46	19	12	21	1.83
62750--62839	14	5.7	14	74	23	81	42	23	25	8	1.83
62742--62856	33	3.5	33	95	0	212	45	20	24	9	1.81
62749--62861	19	6.8	18	72	23	88	43	22	24	9	1.83
62873--62927	14	3.6	14	73	21	56	9	25	23	41	1.83
62857--62927	33	2.2	33	94	0	124	8	22	25	43	1.81
62868--62949	33	2.5	33	89	2	119	9	25	21	42	1.84
62880--62968	20	4.8	20	72	19	75	12	24	19	43	1.85
63048--63118	33	2.2	33	92	0	115	47	18	22	11	1.80
63300--63354	22	2.5	22	81	0	74	20	16	40	23	1.91
63500--63692	20	9.6	20	82	5	219	19	19	25	35	1.95
63500--63692	60	3.2	60	83	0	251	19	19	25	35	1.95
63748--63799	20	2.6	20	96	0	95	21	13	26	38	1.90
64925--65040	21	5.6	21	80	11	132	30	26	20	22	1.98
65049--65206	21	7.6	21	80	8	171	24	20	24	31	1.98
66899--66940	19	2.2	19	86	0	57	23	23	35	16	1.95
67939--68170	104	2.2	104	90	0	365	31	15	23	28	1.96
73115--73167	21	2.5	21	84	0	70	20	26	18	33	1.96
73157--73217	20	3.0	20	97	0	113	40	19	18	21	1.91
73229--73302	20	3.7	20	89	3	96	32	22	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74134--74192	24	2.5	24	91	0	91	27	22	16	33	1.95
74298--74327	3	10.0	3	100	0	60	66	0	33	0	0.92
76542--76635	20	4.7	20	89	2	145	36	24	21	18	1.95
76852--76902	14	3.6	14	91	0	84	49	21	0	29	1.50
78282--78393	42	2.7	42	76	5	111	22	19	37	20	1.94
78871--79015	20	7.4	20	75	12	131	37	22	21	18	1.94
78870--79031	76	2.2	76	93	2	274	37	22	22	17	1.94
79040--79112	20	3.7	20	92	0	92	21	20	20	36	1.95
79022--79112	40	2.3	39	84	1	110	21	20	19	37	1.95
79097--79154	14	4.1	14	84	0	80	8	15	24	51	1.71
81030--81192	20	8.6	20	75	8	108	43	23	17	15	1.87
81052--81193	53	2.5	55	83	7	162	40	23	19	16	1.90
81032--81175	73	2.0	74	95	1	263	41	24	18	15	1.89
81030--81204	93	1.9	92	85	3	244	43	23	18	14	1.87
81529--81594	22	3.0	22	86	0	87	21	16	37	24	1.93
81772--81838	20	3.3	20	85	4	82	23	20	17	37	1.94
82208--82278	28	2.5	30	84	11	87	29	0	16	53	1.44

Tables:   1

The End!