Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005232.1 Hibiscus syriacus cultivar Beakdansim tig00011844_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78916

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2328--2702
182
2.1
179
86
11
540
43
2
7
46
1.46
2784--2852
27
2.4
28
83
11
79
33
17
17
31
1.93
3580--3634
15
3.6
15
75
20
51
36
0
5
58
1.21
5031--5147
23
5.0
23
74
2
99
39
21
15
23
1.91
10260--10347
32
2.8
32
82
0
95
34
18
13
34
1.90
16369--16406
2
19.0
2
100
0
76
50
0
0
50
1.00
25226--25297
30
2.4
30
83
2
81
18
13
13
54
1.72
26033--26106
31
2.4
31
86
0
103
55
13
9
21
1.66
33557--33631
34
2.2
34
83
4
89
50
16
12
21
1.76
38749--38796
18
2.7
18
80
9
62
54
4
0
41
1.20
42920--42980
24
2.5
24
94
0
104
19
27
14
37
1.91
42975--43025
12
4.2
12
73
9
50
41
27
1
29
1.67
43017--43084
30
2.4
29
92
7
113
23
39
7
29
1.82
44571--44645
34
2.2
34
83
4
89
50
16
12
21
1.76
47034--47073
14
2.8
15
81
11
57
70
0
0
30
0.88
50359--50534
97
1.8
97
93
0
307
26
24
21
28
1.99
50645--50751
53
2.0
53
100
0
214
39
28
7
25
1.82
58859--58905
22
2.1
23
96
4
87
34
0
4
61
1.15
59238--59281
21
2.2
20
83
4
52
56
0
4
38
1.20
68480--68546
30
2.2
30
89
0
98
38
1
7
52
1.39
68998--69058
22
2.8
22
89
0
95
26
14
0
59
1.36
71743--71857
34
3.4
34
67
11
99
26
6
5
62
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72817--72847
3
10.3
3
100
0
62
67
0
0
32
0.91
74481--74521
21
2.0
21
95
0
73
17
26
24
31
1.97
74852--74891
21
1.9
21
89
0
62
50
10
10
30
1.69
77903--77943
21
2.0
21
90
0
64
19
26
21
31
1.97

Tables:   1

The End!