genome.fa.s5235.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005235.1 Hibiscus syriacus cultivar Beakdansim tig00011849_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149495

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7190--7261	37	2.0	37	88	2	110	30	13	9	45	1.76
7709--7786	21	3.6	21	75	14	61	30	6	0	62	1.20
9481--9517	14	2.6	14	91	0	56	64	18	8	8	1.45
9482--9531	14	3.6	14	86	0	55	64	20	6	10	1.45
10541--11360	411	2.0	410	91	1	1313	30	19	14	35	1.92
14482--14951	44	10.7	44	70	4	257	32	20	16	30	1.95
14472--14863	176	2.2	176	82	1	437	32	19	16	31	1.94
14591--14999	132	3.1	132	89	1	631	32	21	15	30	1.95
16385--16437	3	17.3	3	80	3	61	35	0	3	60	1.15
21727--21761	15	2.4	15	85	4	54	60	0	0	40	0.97
31513--31557	18	2.6	16	80	19	54	31	0	46	22	1.52
31498--31551	25	2.2	25	100	0	108	31	0	48	20	1.50
37306--37336	11	2.7	11	95	5	53	32	22	0	45	1.53
37560--37601	20	2.1	20	100	0	84	33	21	4	40	1.74
38481--38577	34	2.9	33	79	7	99	29	3	6	60	1.36
38704--38742	18	2.3	18	91	8	64	25	7	0	66	1.18
41930--41991	23	2.7	22	80	9	72	79	4	14	1	0.98
42598--42641	22	2.0	22	91	8	72	38	22	11	27	1.88
43076--43111	18	2.0	18	94	0	63	16	8	33	41	1.78
43545--43649	36	2.9	36	91	2	165	25	23	13	37	1.92
43545--43649	37	2.9	37	92	1	167	25	23	13	37	1.92
43563--43954	102	3.9	102	92	1	635	30	21	11	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43681--43751	37	1.9	37	85	0	97	25	21	9	43	1.83
43767--43853	37	2.4	37	86	5	115	25	21	13	39	1.90
43563--44027	204	2.3	203	87	2	653	30	21	11	35	1.89
43868--43937	36	1.9	36	85	0	95	27	21	12	38	1.90
43896--44033	67	2.1	67	90	0	213	31	21	13	34	1.92
43908--44054	67	2.2	67	85	4	199	32	24	10	31	1.90
44888--45958	105	10.3	105	89	4	1539	33	26	18	22	1.96
44888--45958	205	5.2	205	92	2	1610	33	26	18	22	1.96
44888--45958	310	3.4	312	89	4	1560	33	26	18	22	1.96
46932--47028	34	2.9	33	79	7	99	29	3	6	60	1.36
47156--47194	18	2.3	18	91	8	64	25	7	0	66	1.18
55138--55176	17	2.4	17	86	4	53	41	12	0	46	1.42
55319--55389	20	3.3	20	76	19	72	23	32	19	23	1.98
57979--58021	17	2.4	18	81	18	54	51	6	4	37	1.50
57989--58021	17	1.9	17	93	0	57	51	6	3	39	1.42
58062--58120	19	3.0	19	90	9	100	30	11	6	50	1.65
66573--66690	21	5.7	21	71	4	114	20	17	25	36	1.94
66569--66687	41	2.9	41	96	0	220	20	18	24	36	1.94
66594--66666	20	3.6	20	72	3	74	15	20	23	41	1.90
66679--66755	22	3.5	22	85	1	111	22	16	25	35	1.95
66832--66869	6	6.5	6	96	3	69	31	52	15	0	1.43
67487--67580	22	4.5	21	69	14	68	35	26	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67571--67795	20	11.4	20	76	11	189	39	23	21	15	1.91
67469--67619	62	2.4	62	86	2	178	38	23	21	17	1.93
67787--67840	21	2.6	21	93	0	90	29	25	16	27	1.97
75832--75873	17	2.4	17	80	11	50	76	7	2	14	1.10
97281--97438	37	4.3	37	94	0	262	40	16	19	23	1.91
97442--98236	55	14.5	55	83	3	902	31	16	21	30	1.95
106626--106660	2	17.5	2	100	0	70	51	0	0	48	1.00
116838--116887	3	16.3	3	84	12	57	40	0	0	60	0.97
116829--116887	21	2.9	21	80	14	70	44	0	0	55	0.99
118679--118711	2	16.5	2	100	0	66	48	0	0	51	1.00
118438--118720	146	2.0	141	82	10	340	38	7	5	48	1.55
134302--134335	13	2.6	13	86	13	52	8	14	0	76	1.01
138813--139007	65	3.0	64	80	10	184	29	21	16	32	1.95
140663--140689	12	2.2	12	100	0	54	48	14	37	0	1.45
144932--144989	29	2.0	29	100	0	116	34	6	17	41	1.76
145047--145122	23	3.4	22	78	7	82	28	22	18	30	1.97
145591--145635	19	2.4	19	92	0	72	42	11	8	37	1.72
147847--147985	65	2.2	65	82	13	173	30	23	15	29	1.96

Tables:   1

The End!