genome.fa.s5236.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005236.1 Hibiscus syriacus cultivar Beakdansim tig00011850_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53837

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1391--1617	65	3.5	63	85	8	276	28	20	12	38	1.89
1664--1748	38	2.2	39	87	2	118	32	15	15	36	1.89
1750--1939	52	3.6	53	80	3	206	30	11	17	41	1.84
2123--2638	144	3.6	144	86	0	703	26	25	15	31	1.95
2639--2710	20	3.7	20	75	7	85	23	22	23	30	1.99
2639--2714	38	2.0	39	92	2	127	25	21	23	30	1.99
3860--4053	98	2.0	99	89	2	300	37	16	21	24	1.93
3982--4342	132	2.7	134	83	4	424	37	17	19	24	1.93
10628--10673	21	2.2	21	92	0	74	15	21	39	23	1.92
13192--13253	2	30.0	2	88	3	70	45	1	6	46	1.38
13208--13264	26	2.2	26	90	0	87	45	3	8	42	1.52
16667--16699	5	6.6	5	100	0	66	21	0	21	57	1.41
18270--18384	12	9.4	12	73	14	85	38	0	2	59	1.12
18279--18438	63	2.6	63	89	5	238	41	0	2	56	1.13
18433--18494	19	3.3	19	78	15	58	37	1	0	61	1.06
18954--19013	31	1.9	31	89	0	93	43	10	5	41	1.60
19883--20000	45	2.7	44	77	6	141	29	12	24	33	1.92
19963--20053	44	2.1	42	91	4	146	39	9	20	29	1.85
20607--20996	185	2.1	185	93	2	669	45	7	3	43	1.51
23127--23403	42	6.6	41	73	4	142	31	21	16	30	1.96
23218--23400	84	2.2	84	80	2	197	29	22	19	28	1.98
30426--30487	21	3.1	19	80	13	70	25	38	24	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30428--30467	20	2.0	20	90	5	62	25	37	25	12	1.91
35250--35308	30	2.0	30	86	0	82	23	8	42	25	1.82
35272--35576	60	5.1	59	72	12	205	25	7	36	29	1.84
35456--35670	90	2.4	90	82	6	213	24	6	40	28	1.81
35407--35986	150	3.9	150	81	4	474	23	6	38	31	1.80
35633--36628	30	33.1	30	73	4	513	21	8	39	29	1.84
35480--36453	90	10.9	90	76	4	631	21	8	40	30	1.82
42139--42474	43	7.9	42	84	3	305	25	17	24	32	1.97
42145--42474	85	3.9	83	83	2	300	24	17	25	33	1.96
42869--42937	21	3.3	21	85	0	93	0	34	21	43	1.53
42904--42951	21	2.3	21	81	0	60	0	35	25	39	1.56
42869--42951	42	2.0	42	80	4	96	0	33	24	42	1.55
49548--49607	28	2.1	28	96	0	111	38	13	25	23	1.91
51870--52245	185	2.0	188	85	4	503	31	17	17	34	1.92
52248--52332	41	2.1	41	84	4	109	32	21	16	29	1.95

Tables:   1

The End!