genome.fa.s5237.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005237.1 Hibiscus syriacus cultivar Beakdansim tig00011857_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107108

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8171--8244	24	3.0	23	80	11	76	47	8	4	40	1.52
11158--11197	2	20.0	2	94	0	71	50	2	0	47	1.14
13086--13136	20	2.5	20	75	6	50	29	23	19	27	1.98
22912--23232	97	3.3	94	71	18	255	39	3	7	49	1.48
23053--23105	23	2.3	23	78	12	56	37	1	3	56	1.28
23109--23224	33	3.5	31	73	15	92	41	2	6	50	1.41
23100--23224	65	1.9	64	84	12	166	40	2	5	52	1.38
23081--23227	32	4.6	32	73	12	113	40	2	5	51	1.39
22912--23299	197	2.0	197	86	3	548	39	3	7	49	1.49
22984--23283	97	3.1	96	72	17	274	40	4	6	49	1.46
23305--23353	20	2.3	21	82	13	64	61	6	2	30	1.32
24061--24085	4	6.2	4	100	0	50	0	24	0	76	0.80
25332--25374	22	2.0	22	85	0	59	60	2	0	37	1.10
25339--25398	13	4.6	13	73	19	54	60	1	1	36	1.17
25404--25446	2	21.5	2	88	9	61	44	4	0	51	1.22
25397--25442	22	2.1	22	95	0	83	39	8	0	52	1.33
25910--25939	13	2.3	13	94	0	51	70	0	0	30	0.88
26005--26045	14	3.0	14	86	10	50	78	2	0	19	0.87
26065--26117	11	4.5	11	79	11	52	77	1	5	15	1.04
26052--26092	11	3.5	12	83	12	50	75	0	7	17	1.02
26064--26116	24	2.2	24	86	3	70	79	1	5	13	0.99
27189--27219	16	1.9	16	93	0	53	80	3	0	16	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27179--27221	7	5.9	7	84	10	50	81	4	0	13	0.84
27310--27510	39	5.4	38	84	9	240	46	6	2	44	1.42
27308--27502	75	2.6	74	82	10	263	45	6	2	45	1.43
27310--27510	38	5.4	36	82	10	201	46	6	2	44	1.42
28705--28795	46	2.0	46	89	2	139	28	24	18	28	1.98
36154--36197	21	2.1	21	82	0	52	9	43	15	31	1.79
37364--37416	20	2.7	20	94	2	90	32	30	18	18	1.96
39028--39077	12	4.1	12	78	14	57	20	0	2	78	0.86
39028--39077	6	8.3	6	77	14	50	20	0	2	78	0.86
39028--39080	18	2.9	18	81	13	63	24	0	1	73	0.93
39305--39333	3	9.7	3	100	0	58	31	0	34	34	1.58
40755--40782	6	4.7	6	100	0	56	71	0	0	28	0.86
41137--41179	11	4.0	11	81	6	52	79	2	9	9	1.03
41137--41179	21	2.0	21	86	4	59	79	2	9	9	1.03
41917--41995	37	2.2	37	88	4	126	3	6	29	60	1.39
42264--42302	15	2.5	15	88	12	53	84	2	0	12	0.72
42312--42567	35	6.9	35	78	12	196	46	8	1	43	1.42
42340--42554	37	5.8	36	78	15	181	46	8	1	42	1.43
42452--42547	43	2.2	45	88	5	151	46	8	1	43	1.40
43260--43603	85	4.1	85	78	5	329	28	17	19	34	1.95
43260--43603	168	2.0	170	84	3	453	28	17	19	34	1.95
43675--43853	42	4.2	42	70	8	128	22	24	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43675--43906	128	1.8	128	85	0	329	23	24	23	28	2.00
49137--49179	21	2.0	21	86	13	61	69	4	0	25	1.07
49175--49251	22	3.3	22	75	12	64	76	3	7	11	1.13
49166--49253	33	2.6	32	82	12	106	75	3	6	14	1.15
49329--49377	16	3.1	15	81	16	55	77	0	8	14	0.98
52832--52899	31	2.2	30	89	2	100	44	8	17	29	1.79
54311--54355	22	2.0	23	95	4	83	33	13	26	26	1.93
54309--54361	22	2.5	20	85	11	79	32	13	28	26	1.93
55042--55238	68	2.9	68	87	0	277	32	14	24	28	1.94
55179--55750	81	7.0	81	89	2	867	38	12	21	27	1.89
55183--55750	246	2.3	243	90	2	870	38	12	21	27	1.89
55183--55828	246	2.6	245	84	6	810	39	11	20	28	1.88
55882--55936	2	27.5	2	100	0	110	50	0	0	49	1.00
56746--56908	84	1.9	86	83	2	213	32	20	17	30	1.95
56900--56929	13	2.3	13	94	0	51	30	20	6	43	1.77
57000--57026	2	13.5	2	100	0	54	48	0	0	51	1.00
60574--60665	31	3.0	31	88	0	130	36	22	18	21	1.95
61566--61626	32	1.9	32	86	3	88	34	26	8	31	1.86
72070--72215	48	3.1	47	83	4	177	47	17	10	23	1.78
78540--78644	53	2.0	53	86	0	147	33	22	17	26	1.96
78662--78809	48	3.1	48	88	3	210	44	20	10	23	1.83
86895--86958	21	3.0	21	81	4	65	23	35	25	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86897--86977	21	3.8	21	74	18	60	23	37	24	14	1.93
87345--87393	26	2.0	26	88	8	75	53	4	4	38	1.39
95305--95337	15	2.2	15	94	0	57	30	9	0	60	1.27

Tables:   1

The End!