genome.fa.s5238.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005238.1 Hibiscus syriacus cultivar Beakdansim tig00011858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87379

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1966--1992	2	13.5	2	100	0	54	51	0	0	48	1.00
2642--2683	2	21.0	2	100	0	84	50	0	0	50	1.00
4237--4526	153	1.9	147	84	6	386	31	14	17	37	1.89
16821--16860	21	2.0	21	85	14	57	35	2	10	52	1.48
16906--16981	37	2.1	37	85	5	100	25	5	11	57	1.54
32113--32144	3	10.7	3	100	0	64	34	31	0	34	1.58
32302--32385	44	1.9	44	85	0	114	30	14	19	35	1.91
34932--34987	23	2.5	22	85	2	67	53	5	0	41	1.24
34943--34987	22	2.0	23	86	4	65	57	6	0	35	1.25
36799--36947	33	4.4	34	77	18	157	44	18	22	14	1.86
36828--36947	19	6.8	19	83	16	170	46	17	21	14	1.83
36799--36947	52	2.9	52	92	0	253	44	18	22	14	1.86
36966--37023	20	2.9	20	94	0	98	17	22	22	37	1.93
38084--38130	24	2.0	24	91	0	76	25	19	21	34	1.96
38313--38337	12	2.1	12	100	0	50	72	0	28	0	0.86
40629--40756	33	3.8	33	83	5	177	45	20	20	14	1.85
40630--40762	66	2.0	67	92	1	223	44	20	20	15	1.87
40786--40822	14	2.6	14	91	0	65	45	24	0	29	1.53
42180--42246	21	3.2	21	68	4	55	19	20	35	23	1.95
42180--42302	42	2.9	41	80	7	113	22	17	36	22	1.95
44302--44461	19	8.8	19	71	15	97	44	21	21	12	1.85
44327--44412	33	2.6	33	92	1	136	38	25	24	11	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44397--44466	19	3.7	19	94	0	113	47	20	20	12	1.82
44462--44506	19	2.4	19	92	0	72	8	15	26	48	1.74
45059--45151	20	4.6	20	78	2	78	23	17	24	34	1.96
45105--45274	20	8.3	19	71	18	96	18	22	17	41	1.91
45078--45155	41	1.9	41	86	0	111	21	16	21	39	1.92
45141--45274	41	3.3	41	98	0	250	17	24	17	40	1.91
45141--45274	20	6.5	21	79	4	148	17	24	17	40	1.91
45534--45569	18	2.0	18	100	0	72	44	0	11	44	1.39
46240--46296	30	1.9	30	100	0	114	38	21	17	22	1.93
46259--46373	54	2.1	54	88	3	169	31	24	20	23	1.98
48967--49025	31	1.9	31	96	0	109	44	5	3	47	1.42
49541--49622	23	3.6	23	98	0	155	32	20	26	19	1.97
50609--50679	31	2.3	31	76	7	74	52	9	11	26	1.68
64636--64671	18	2.0	18	88	0	54	50	0	0	50	1.00
69479--69512	17	2.0	17	100	0	68	23	29	17	29	1.97
72011--72065	23	2.4	22	75	19	58	41	7	10	40	1.68
74074--74106	2	16.5	2	100	0	66	51	0	0	48	1.00
79088--79129	2	21.0	2	90	0	66	45	0	4	50	1.23

Tables:   1

The End!