genome.fa.s524.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000524.1 Hibiscus syriacus cultivar Beakdansim tig00001006_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146533

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946--999	22	2.5	22	79	5	67	29	12	29	27	1.94
1466--1600	34	3.6	34	72	22	126	36	10	22	30	1.88
1432--1882	45	11.2	40	68	24	242	34	11	24	29	1.91
1432--1896	79	5.9	79	91	2	736	35	12	23	28	1.91
1716--1837	34	3.3	34	70	22	100	36	13	21	29	1.91
2182--2300	29	4.1	29	96	0	202	44	2	24	28	1.67
2437--2469	2	16.5	2	93	0	57	48	0	0	51	1.00
3659--3896	32	7.4	32	87	1	271	26	26	27	18	1.98
3654--3896	96	2.5	95	85	2	324	26	26	27	19	1.99
9673--9721	25	1.9	24	84	12	62	61	2	4	32	1.26
15659--15786	60	2.1	60	82	5	152	35	25	3	36	1.72
17081--17106	2	13.0	2	100	0	52	50	0	0	50	1.00
17495--17609	37	3.0	39	85	6	139	37	15	0	46	1.46
18269--18335	27	2.5	27	97	0	125	35	8	17	37	1.82
22979--23139	64	2.5	63	85	7	191	34	18	19	26	1.95
23600--23817	103	2.1	103	93	0	373	26	13	23	37	1.91
23841--23896	23	2.5	22	82	8	67	17	23	26	32	1.97
28533--28557	2	12.5	2	100	0	50	52	0	0	48	1.00
28828--29196	20	18.5	20	84	5	442	34	25	18	20	1.96
29877--29923	24	2.0	24	87	8	69	25	14	21	38	1.92
30098--30122	12	2.1	12	100	0	50	72	0	28	0	0.86
32405--32678	19	15.4	19	81	15	345	46	18	20	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32433--32678	71	3.4	74	84	11	293	46	17	21	14	1.83
32433--32700	109	2.5	104	89	6	437	46	17	21	14	1.84
32405--32715	161	2.0	157	91	5	500	45	18	20	15	1.85
32433--32700	52	5.0	52	90	4	428	46	17	21	14	1.84
32707--32807	19	5.6	19	85	12	142	14	23	17	43	1.87
32914--32950	14	2.6	14	91	0	65	45	21	0	32	1.52
34853--34918	19	3.4	20	87	6	91	45	27	16	10	1.80
34909--34965	14	3.7	14	77	20	60	47	22	21	8	1.78
34890--34982	33	2.8	33	95	0	168	48	21	20	9	1.78
34869--34987	19	6.8	19	75	18	105	47	22	20	9	1.78
34983--35111	19	7.3	19	75	17	125	8	17	28	45	1.77
34983--35074	33	2.8	33	93	3	150	7	18	28	45	1.76
35155--35626	93	5.1	93	98	1	912	46	18	12	22	1.83
35155--35626	185	2.6	185	99	0	926	46	18	12	22	1.83
37331--37420	14	5.7	14	73	23	72	42	23	24	10	1.84
37323--37437	33	3.5	33	92	0	203	45	20	23	10	1.82
37330--37442	19	6.8	18	72	23	88	43	22	23	10	1.84
37454--37508	14	3.6	14	73	21	56	9	25	23	41	1.83
37438--37508	33	2.2	33	94	0	124	8	22	25	43	1.81
37449--37530	33	2.5	33	89	2	119	9	25	21	42	1.84
37461--37549	20	4.8	20	72	19	75	12	24	19	43	1.85
37629--37699	33	2.2	33	92	0	115	47	18	22	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37881--37935	22	2.5	22	84	0	83	20	14	40	25	1.90
38081--38254	20	8.6	20	83	5	217	19	19	26	34	1.96
38080--38273	20	9.6	20	81	2	66	19	19	25	35	1.95
38081--38254	60	2.9	60	85	0	249	19	19	26	34	1.96
38329--38380	20	2.6	20	96	0	95	21	13	26	38	1.90
40388--40420	3	11.3	3	87	6	50	60	0	0	39	0.97
40375--40434	6	10.2	6	78	8	52	53	1	1	43	1.20
42883--43026	64	2.2	64	82	11	170	36	15	20	27	1.94
43487--43701	103	2.1	103	92	0	358	26	12	25	36	1.91
43720--43783	23	2.8	23	79	9	76	20	25	26	28	1.99
47944--47969	12	2.2	12	100	0	52	34	0	23	42	1.54
48976--49095	42	2.9	40	85	8	152	35	15	0	49	1.44
49654--49679	3	8.7	3	100	0	52	65	0	34	0	0.93
53608--53639	15	2.1	15	100	0	64	50	18	18	12	1.78
54862--54933	30	2.4	30	81	11	85	52	11	8	27	1.65
54976--55054	29	2.7	30	82	3	99	53	10	10	26	1.66
56276--56576	75	4.1	74	82	9	350	44	2	8	44	1.48
56276--56592	37	8.7	36	84	9	346	43	2	9	44	1.50
56276--56578	114	2.7	112	88	6	429	44	2	8	44	1.48
56466--56636	31	5.4	31	80	15	147	46	1	8	43	1.45
56582--56672	38	2.4	36	77	10	92	48	4	6	40	1.49
56789--56825	12	3.2	12	81	14	51	27	0	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57335--57692	177	2.0	177	97	0	680	23	15	29	31	1.95
58326--58381	2	28.0	2	100	0	112	50	0	0	50	1.00
65123--65435	39	8.4	38	78	13	289	46	3	8	40	1.51
65122--65176	28	2.0	28	85	7	76	45	3	7	43	1.49
65128--65236	38	2.8	40	80	9	125	52	1	7	38	1.40
65228--65447	66	3.1	64	74	16	170	45	4	8	41	1.54
65257--65322	29	2.2	30	89	2	98	45	3	7	43	1.47
65142--65447	144	2.1	144	82	8	383	47	3	8	41	1.50
65212--65397	104	1.8	102	84	6	259	45	3	9	41	1.52
66206--66232	8	3.4	8	100	0	54	37	0	62	0	0.95
66656--66707	7	7.4	7	97	0	77	48	5	0	46	1.26
68619--68697	35	2.2	36	93	2	133	44	24	0	31	1.54
68619--68714	36	2.7	35	85	6	131	43	27	1	28	1.62
69188--69474	148	1.9	148	91	2	470	49	8	5	36	1.57
69654--69730	35	2.2	35	86	4	102	33	1	22	42	1.62
75517--75554	20	1.9	20	88	0	58	10	23	0	65	1.23
76422--76564	70	2.0	70	95	0	259	34	8	19	37	1.82
81567--81646	35	2.3	35	91	0	124	43	23	0	32	1.54
81567--81662	35	2.7	34	85	6	111	41	26	1	31	1.62
88444--88593	80	1.9	81	82	2	194	31	20	14	34	1.92
88730--88765	13	2.8	13	91	0	54	47	13	13	25	1.80
91915--91986	35	2.1	35	94	0	126	33	11	16	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92135--92181	13	3.6	13	94	0	76	46	17	17	19	1.84
97250--97282	15	2.1	16	88	5	50	21	3	6	69	1.24
101220--101272	11	5.0	10	80	15	54	16	7	0	75	1.02
101239--101280	14	3.0	14	83	10	50	21	4	0	73	1.01
101220--101272	5	10.0	5	86	10	54	16	7	0	75	1.02
101230--101280	19	2.7	18	82	11	57	19	5	0	74	1.02
103940--103998	29	2.0	29	100	0	118	23	13	13	49	1.78
108609--108680	29	2.5	29	88	4	83	29	15	11	44	1.80
108624--108682	29	2.0	29	100	0	118	23	13	13	49	1.78
111584--111608	12	2.1	12	100	0	50	24	16	28	32	1.96
118453--118605	74	2.0	76	88	3	229	30	9	5	54	1.54
122428--122470	16	2.7	16	88	0	68	60	20	9	9	1.55
122465--122490	13	2.0	13	100	0	52	53	23	7	15	1.67
122582--122646	11	5.8	11	81	3	76	24	21	23	30	1.99
122581--122646	34	1.9	34	90	0	105	24	21	24	30	1.99
122991--123022	14	2.3	14	94	0	55	53	21	15	9	1.70
122971--123021	24	2.1	24	89	7	77	56	17	11	13	1.66
125114--125167	2	27.0	2	100	0	108	50	0	0	50	1.00
126234--126406	86	2.0	86	100	0	346	19	8	23	49	1.75
126834--126985	53	2.9	53	89	3	243	23	28	18	30	1.97
126834--127005	53	3.2	52	85	4	229	23	29	18	29	1.98
126995--127298	51	5.9	51	92	3	484	25	28	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128653--128694	18	2.3	19	80	8	52	4	26	0	69	1.08
132219--132258	2	20.0	2	94	0	71	50	2	0	47	1.14
138401--138543	45	3.1	45	88	6	198	38	20	12	27	1.89
140189--140265	2	38.5	2	100	0	154	50	0	0	49	1.00
141331--141503	86	2.0	86	98	0	337	20	8	22	49	1.75
144941--145006	31	2.1	31	83	5	80	7	28	19	43	1.78

Tables:   1

The End!