genome.fa.s5240.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005240.1 Hibiscus syriacus cultivar Beakdansim tig00011862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54021

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5131--5266	61	2.2	60	83	3	157	23	24	16	35	1.95
6261--6325	19	3.4	20	89	8	100	23	21	16	38	1.93
6871--6926	28	2.0	28	82	6	69	32	7	14	46	1.71
7062--7129	35	1.9	35	81	0	82	29	16	19	35	1.93
7960--8156	61	3.2	62	76	13	167	17	21	21	39	1.93
8330--8363	10	3.4	10	87	0	50	8	14	23	52	1.69
9455--9514	16	3.8	16	88	0	84	11	10	20	58	1.61
9452--9504	26	2.0	26	85	7	72	11	9	18	60	1.57
14070--14158	20	4.4	20	81	5	99	25	26	22	24	2.00
14975--15028	24	2.2	24	90	0	81	22	18	18	40	1.91
15218--15254	14	2.6	14	91	4	56	51	21	21	5	1.68
17381--17663	140	2.0	140	99	0	557	27	13	15	43	1.85
17634--17764	20	6.8	20	76	10	139	34	20	19	25	1.96
17634--17808	74	2.4	74	86	2	237	35	20	19	25	1.95
17803--17866	20	3.2	20	86	0	83	15	18	20	45	1.86
18000--18036	14	2.6	14	100	0	74	48	21	0	29	1.50
19418--19540	42	2.9	42	80	7	142	23	17	37	21	1.94
19418--19530	21	5.4	21	73	4	93	22	18	37	22	1.94
20015--20056	19	2.2	20	91	4	68	50	23	11	14	1.76
20043--20091	20	2.5	20	93	0	80	34	26	20	18	1.95
20083--20158	33	2.3	34	90	2	118	44	19	21	14	1.86
20125--20162	20	1.9	20	94	0	67	47	18	21	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20158--20197	19	2.1	19	90	0	62	10	17	30	42	1.82
20167--20203	19	1.9	19	94	0	65	5	18	27	48	1.70
20173--20247	33	2.3	33	83	0	87	10	21	24	44	1.84
22178--22233	20	2.8	20	91	0	85	50	23	16	10	1.76
22181--22297	20	6.2	19	76	13	82	41	23	18	17	1.90
22888--22936	20	2.5	20	96	0	89	24	20	28	26	1.99
22965--23001	19	1.9	19	88	0	56	21	13	29	35	1.92
24862--24929	29	2.3	29	92	0	109	30	33	26	8	1.87
25723--25774	21	2.5	22	75	6	54	38	0	7	53	1.30
26235--26296	17	3.4	17	73	16	61	40	0	11	48	1.39
26257--26300	23	2.0	23	81	4	54	40	0	9	50	1.34
26425--26468	23	2.0	23	81	4	54	40	0	9	50	1.34
26242--26587	168	2.1	169	98	1	676	40	6	12	40	1.69
32441--32473	15	2.1	16	94	5	59	30	27	9	33	1.88
34220--34278	26	2.3	26	82	8	75	35	5	1	57	1.31
35294--35495	85	2.4	83	85	2	260	34	18	18	28	1.95
35294--35532	85	2.8	85	82	1	212	33	19	18	28	1.95
36190--36225	12	3.2	12	92	7	58	44	22	0	33	1.53
37718--37772	26	2.2	26	83	9	69	32	1	1	63	1.15
37726--37785	26	2.3	26	80	11	77	33	3	1	61	1.22
40969--41009	21	2.0	21	85	0	55	41	12	0	46	1.41
42117--42186	2	35.0	2	94	0	122	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46871--46924	20	2.6	21	82	5	65	33	18	24	24	1.97
49771--50278	266	1.9	269	84	6	681	25	21	15	38	1.92
49771--50285	178	2.9	180	82	6	627	25	21	15	38	1.92
49771--50285	91	5.7	91	81	6	545	25	21	15	38	1.92
52474--52534	28	2.2	28	87	0	86	21	8	36	34	1.83

Tables:   1

The End!