Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005243.1 Hibiscus syriacus cultivar Beakdansim tig00011866_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75449

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7340--7369
14
2.1
15
93
6
53
50
3
13
33
1.58
7487--7539
14
3.8
14
87
0
61
43
20
7
28
1.79
7614--7638
2
12.5
2
100
0
50
52
0
0
48
1.00
7713--7778
7
9.4
7
81
0
69
48
30
0
21
1.50
7713--7778
21
3.1
21
84
0
78
48
30
0
21
1.50
8586--8634
24
2.1
23
92
3
80
44
2
8
44
1.45
8719--8785
7
9.7
7
75
3
55
47
31
0
20
1.51
8719--8785
21
3.2
21
76
4
73
47
31
0
20
1.51
8950--8996
14
3.7
14
71
26
50
51
4
0
44
1.21
8948--8997
23
2.1
24
96
3
93
48
4
0
48
1.20
9019--9070
22
2.2
24
90
6
81
38
3
0
57
1.17
9266--9320
16
3.4
16
87
0
83
38
12
27
21
1.90
10747--10822
33
2.3
33
81
2
91
40
5
7
46
1.56
10743--11148
195
2.1
196
85
3
548
38
4
8
49
1.53
11122--11186
31
2.1
31
97
0
121
35
6
6
52
1.51
13101--13139
2
19.5
2
100
0
78
48
0
0
51
1.00
13260--13318
15
4.0
14
76
8
55
25
3
3
67
1.21
13322--13357
15
2.5
14
90
4
54
27
5
0
66
1.13
13586--13679
49
1.9
48
85
6
127
13
12
3
70
1.29
14606--14632
4
6.8
4
100
0
54
0
22
0
77
0.76
18635--19358
110
6.7
110
88
2
988
34
21
17
25
1.95
19494--19859
85
4.4
83
79
6
380
29
24
20
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19547--19911
165
2.2
167
85
5
470
32
23
20
23
1.98
22717--22761
23
1.9
24
86
4
65
31
2
0
66
1.04
22733--22769
15
2.3
17
86
9
51
24
5
0
70
1.08
22819--22845
2
13.5
2
100
0
54
48
0
0
51
1.00
22868--22996
14
9.5
12
70
21
62
25
3
2
68
1.15
22873--22976
16
7.0
14
74
19
70
24
1
2
71
1.10
23284--23326
21
2.1
20
82
4
50
18
6
0
74
1.04
28384--28414
2
15.5
2
100
0
62
51
0
0
48
1.00
28595--28636
13
3.2
13
89
0
66
33
14
21
30
1.93
28585--28636
26
2.0
26
84
0
68
34
11
21
32
1.89
37439--37493
20
2.8
20
88
0
74
34
7
18
40
1.78
39521--39563
18
2.4
18
100
0
86
18
32
18
30
1.95
44938--44984
16
3.0
15
87
9
67
59
0
2
38
1.09
46218--46261
23
1.9
23
100
0
88
27
13
13
45
1.81
46314--46352
16
2.4
17
91
4
62
48
25
7
17
1.74
48528--48585
29
2.1
28
81
15
68
46
13
15
24
1.82
48657--48718
27
2.4
25
89
7
90
27
16
16
40
1.89
52743--52782
17
2.4
17
86
0
53
32
15
12
40
1.84
52789--52847
17
3.5
17
68
13
50
28
15
8
47
1.74
56498--56556
17
3.5
17
68
13
50
28
15
8
47
1.74
58976--59159
62
3.0
61
75
13
146
33
22
12
31
1.91
59085--59243
20
8.1
20
68
16
100
25
22
10
42
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59062--59157
40
2.3
43
78
18
114
30
20
12
36
1.90
60003--60030
12
2.3
12
100
0
56
57
32
0
10
1.33
62811--62859
19
2.5
19
83
3
62
42
22
16
18
1.88
62856--62923
20
3.4
20
79
0
73
19
19
20
41
1.91
64459--64598
21
6.7
21
76
9
108
25
14
37
22
1.92
64467--64581
42
2.7
42
78
7
126
26
13
37
22
1.91
64911--64997
21
4.1
21
65
11
52
37
34
9
18
1.83
64911--65030
63
1.9
63
81
3
143
35
33
10
20
1.87
65165--65309
42
3.5
41
83
2
177
20
14
38
26
1.91
65165--65330
42
4.0
42
84
2
176
23
14
36
25
1.93
66876--66908
14
2.3
15
89
5
50
51
15
9
24
1.72
66904--66970
20
3.4
19
80
10
73
52
19
13
14
1.75
66977--67015
20
2.0
20
94
0
69
12
12
23
51
1.74
67449--67504
20
2.8
20
86
0
76
37
8
21
32
1.84
74638--74687
20
2.5
20
76
0
64
28
18
24
30
1.97
74800--74853
20
2.7
20
77
11
65
33
24
11
31
1.90

Tables:   1

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