genome.fa.s5244.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005244.1 Hibiscus syriacus cultivar Beakdansim tig00011867_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58225

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6441--6480	17	2.3	18	83	16	57	7	27	0	65	1.20
7358--7416	23	2.7	23	84	10	79	33	20	23	22	1.97
8539--8588	20	2.5	20	80	0	64	24	38	16	22	1.93
8607--8644	20	1.9	20	94	0	67	15	31	26	26	1.96
11027--11084	18	3.0	19	85	11	82	32	6	8	51	1.59
11309--11349	20	2.0	20	95	0	73	21	21	24	31	1.98
11399--11436	20	1.9	20	94	0	67	15	34	23	26	1.95
11524--11563	20	1.9	22	90	10	66	37	40	10	12	1.77
12351--12378	2	14.0	2	100	0	56	50	0	0	50	1.00
14867--14899	15	2.2	15	100	0	66	39	6	12	42	1.67
15832--15899	33	2.1	33	100	0	136	55	8	8	26	1.59
18133--18184	19	2.7	19	87	0	77	25	38	13	23	1.91
19342--19390	20	2.5	20	82	0	53	34	18	8	38	1.80
36837--36878	11	3.6	11	87	12	66	85	0	14	0	0.59
36849--36903	17	3.1	17	77	15	58	80	1	18	0	0.81
37649--38734	105	10.4	105	92	1	1729	33	25	17	23	1.96
40059--40101	19	2.2	20	87	4	61	27	23	18	30	1.98
41799--41948	53	2.8	53	92	2	257	39	19	15	26	1.91
49773--49924	53	2.9	53	91	0	241	36	19	15	27	1.93
51187--51227	18	2.3	18	100	0	82	51	24	9	14	1.72
57501--57534	17	2.1	17	88	5	52	32	23	5	38	1.79
57836--57891	2	30.0	2	86	13	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58023--58048	12	2.2	12	100	0	52	50	7	42	0	1.31

Tables:   1

The End!