genome.fa.s5245.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005245.1 Hibiscus syriacus cultivar Beakdansim tig00011868_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93818

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13189--13230	22	1.9	22	85	9	59	33	7	0	59	1.25
24562--24599	15	2.5	15	91	0	58	36	7	23	31	1.84
28429--28489	16	3.8	16	93	0	104	57	21	13	8	1.62
28716--28767	11	4.6	11	80	4	59	23	23	23	30	1.99
28713--28767	23	2.5	22	82	5	65	21	23	23	30	1.99
29452--29507	14	4.3	14	78	17	66	50	23	16	10	1.76
29445--29506	24	2.6	24	92	0	97	51	22	14	11	1.74
31790--33062	291	4.5	286	80	5	1295	15	24	20	39	1.91
31798--33053	435	2.9	426	80	5	1369	15	24	20	39	1.91
31790--33062	144	8.9	144	84	4	1293	15	24	20	39	1.91
34541--34588	21	2.4	20	76	10	53	54	2	0	43	1.12
45999--46120	35	3.4	36	87	6	176	45	18	2	32	1.63
50128--50159	16	2.0	16	93	0	55	34	25	6	34	1.81
55693--55809	60	2.0	60	80	13	134	34	21	7	36	1.82
56552--56608	2	28.0	2	92	3	96	50	1	0	47	1.11
58340--58371	16	2.0	16	100	0	64	43	18	18	18	1.88
60370--60446	37	2.1	36	80	9	84	45	1	5	48	1.33
60592--60629	20	1.9	20	88	0	58	18	26	13	42	1.87
64654--64773	60	2.0	60	81	0	141	32	13	15	38	1.87
65792--65842	20	2.6	20	84	3	59	37	29	11	21	1.89
66709--66741	2	16.5	2	100	0	66	48	0	0	51	1.00
68565--68626	14	4.0	14	75	22	61	24	38	29	8	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68595--68641	24	2.0	24	86	0	67	23	34	36	6	1.80
68565--68637	34	2.1	34	89	0	110	24	36	31	6	1.82
68709--68800	10	8.5	10	70	15	67	8	35	30	25	1.86
68767--68794	14	2.0	14	100	0	56	7	28	42	21	1.79
74826--74865	21	1.9	21	94	0	71	30	2	22	45	1.66
78518--78556	5	7.8	5	85	0	51	17	35	41	5	1.72

Tables:   1

The End!