Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005246.1 Hibiscus syriacus cultivar Beakdansim tig00011869_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71552

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6261--6303
16
2.6
16
88
3
59
51
2
0
46
1.13
14603--14700
47
2.1
46
84
3
133
35
4
13
46
1.62
16841--16872
2
16.0
2
100
0
64
50
0
0
50
1.00
19249--19284
6
6.0
6
93
0
54
16
22
16
44
1.86
25179--25203
13
1.9
13
100
0
50
32
24
20
24
1.98
25314--25338
13
1.9
13
100
0
50
32
24
20
24
1.98
25144--25490
135
2.6
134
91
2
536
29
18
22
28
1.97
25326--25410
42
2.0
42
88
0
125
23
20
27
29
1.99
25368--25730
93
4.0
93
72
12
340
30
19
22
28
1.98
25558--25798
42
5.8
42
73
5
204
28
19
23
29
1.98
25563--25666
20
4.9
21
65
13
61
25
20
26
27
1.99
25585--25656
20
3.5
20
70
7
63
23
23
25
27
2.00
25959--26485
264
2.0
264
89
3
810
38
12
21
26
1.90
26809--26864
28
2.0
29
85
3
78
28
42
12
16
1.84
28309--28349
17
2.4
17
100
0
82
46
0
17
36
1.48
37777--37850
28
2.6
29
81
12
82
36
8
0
55
1.30
37743--37845
29
3.7
27
71
21
88
38
5
0
55
1.24
37863--37926
29
2.2
30
83
13
80
43
6
0
50
1.27
37955--37979
5
5.0
5
100
0
50
40
0
0
60
0.97
37935--38005
33
2.1
34
81
2
81
40
4
1
53
1.29
38007--38054
20
2.3
22
82
7
64
64
0
4
31
1.12
38015--38096
29
2.7
32
78
12
93
62
0
6
31
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39187--39486
147
2.0
147
98
0
573
31
27
7
34
1.84
39570--39651
35
2.3
35
91
0
128
28
21
17
32
1.96
39570--39750
35
5.0
35
73
18
120
23
22
17
36
1.94
39605--39809
76
2.7
77
86
4
288
25
20
18
35
1.95
44662--44711
2
25.0
2
100
0
100
50
0
0
50
1.00
48068--48120
17
3.1
17
88
0
79
41
5
15
37
1.70
48071--48138
17
3.9
18
84
5
61
41
8
11
38
1.73
50645--50674
14
2.1
14
100
0
60
43
26
0
30
1.55
51003--51060
27
2.1
28
90
3
91
13
10
1
74
1.15
54818--55026
87
2.4
86
81
12
227
39
5
0
55
1.26
54818--55027
28
7.3
28
72
10
140
39
5
0
55
1.26
56777--56852
29
2.6
29
85
8
100
53
7
5
32
1.52
61269--61329
26
2.3
26
94
0
113
16
19
24
39
1.92
66734--66815
2
43.0
2
90
9
136
47
0
0
52
1.00
66734--66815
13
6.1
14
91
8
136
47
0
0
52
1.00
66735--66815
17
4.9
17
95
4
148
46
0
0
53
1.00

Tables:   1

The End!