Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005248.1 Hibiscus syriacus cultivar Beakdansim tig00011871_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65838

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--361
116
3.2
113
87
5
494
26
22
15
35
1.94
628--971
71
4.8
72
77
9
287
38
12
18
29
1.88
888--986
35
2.8
34
72
11
83
41
10
19
29
1.84
2480--2584
5
20.8
5
66
22
51
0
18
2
78
0.94
2480--2594
10
11.2
10
70
17
67
0
17
2
79
0.90
2511--2594
12
7.4
11
77
13
64
1
15
2
80
0.87
2511--2594
20
4.2
20
76
10
84
1
15
2
80
0.87
2506--2629
20
6.4
19
75
18
78
4
16
3
76
1.07
6559--6620
26
2.4
25
80
17
65
59
6
8
25
1.50
8973--9158
35
5.3
34
88
1
264
31
20
23
24
1.98
10661--10765
51
2.1
50
83
1
129
17
33
30
19
1.94
10811--10933
49
2.5
51
89
5
189
24
24
23
27
2.00
16111--16331
110
2.0
111
92
0
372
46
9
8
36
1.65
16455--16486
10
3.2
10
100
0
64
40
0
31
28
1.57
19318--19351
6
6.0
6
96
3
54
0
17
52
29
1.45
22429--22638
67
3.0
66
74
9
204
44
5
12
36
1.67
22279--22672
141
2.7
139
83
8
436
43
6
13
36
1.69
22286--22672
73
5.4
74
74
6
339
43
5
13
36
1.69
22960--23182
72
3.1
72
75
9
202
35
14
7
42
1.74
22991--23197
72
2.9
71
76
8
222
35
12
7
43
1.71
27194--27233
11
3.6
12
80
12
50
67
0
2
30
1.04
27879--27937
30
2.0
30
89
0
91
52
5
3
38
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31136--31816
55
12.8
52
89
4
761
28
26
16
28
1.97
33144--33182
16
2.5
15
88
8
60
7
15
0
76
0.99
33230--33265
19
1.9
18
94
5
63
8
16
0
75
1.04
54434--54484
26
2.0
26
84
7
68
39
1
0
58
1.09
54881--54939
21
2.7
22
73
5
66
22
23
20
33
1.97
54924--55054
20
6.6
20
89
3
131
31
22
19
25
1.98
54866--55054
40
4.7
40
75
9
141
27
23
19
29
1.98
55867--55929
24
2.6
24
82
0
81
23
15
19
41
1.90
58191--58226
18
2.0
18
94
0
63
55
25
2
16
1.55
58287--58552
140
1.9
140
98
0
514
28
13
15
42
1.85
58527--58711
20
9.9
20
74
13
151
34
23
17
24
1.96
58534--58672
54
2.6
54
89
0
215
35
26
16
21
1.95
58754--58792
20
2.0
20
94
0
69
7
20
25
46
1.77
58929--58965
14
2.6
14
91
0
56
48
16
0
35
1.46
60386--60467
42
2.0
42
82
4
103
20
17
40
21
1.91
60964--61030
20
3.5
18
84
11
80
35
25
19
19
1.95
60975--61030
20
2.8
20
94
0
94
35
25
19
19
1.95
61073--61121
20
2.4
21
96
3
91
14
20
26
38
1.91
63018--63085
20
3.5
20
85
2
93
50
23
14
11
1.76
63460--63508
22
2.3
21
80
16
57
24
12
38
24
1.90
63472--63513
22
1.9
22
100
0
84
19
14
40
26
1.89
63688--63802
20
5.7
20
75
8
106
29
19
23
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65561--65604
2
22.5
2
95
4
81
47
0
0
52
1.00

Tables:   1

The End!