genome.fa.s525.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000525.1 Hibiscus syriacus cultivar Beakdansim tig00001007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91137

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3558--3598	16	2.6	16	92	3	66	7	26	0	65	1.18
12798--12858	31	2.0	31	93	0	104	29	18	29	22	1.97
13402--13440	21	1.9	20	84	5	51	30	12	20	35	1.90
16697--16865	84	2.0	82	89	3	259	30	1	11	56	1.44
20209--20263	18	3.1	18	86	0	74	18	23	20	38	1.93
21766--21825	31	1.9	31	82	0	75	36	11	30	21	1.89
22901--23005	56	1.9	55	82	9	133	53	3	6	36	1.45
23328--23458	59	2.2	58	82	6	154	32	16	16	33	1.92
28730--28945	55	3.9	54	79	9	190	31	23	16	29	1.96
28749--29200	51	8.6	56	85	7	282	28	25	16	29	1.97
28799--29215	51	8.0	51	88	3	537	28	25	16	29	1.96
30536--30634	14	6.1	16	71	21	73	7	18	2	72	1.17
30551--30642	35	2.6	37	73	18	88	8	18	1	71	1.17
46553--46693	44	3.3	43	91	4	207	32	18	21	26	1.97
46708--46996	43	6.8	43	87	2	413	31	19	22	26	1.98
46596--46805	112	1.9	112	87	4	307	31	20	23	24	1.98
46546--46847	154	2.0	155	86	3	430	32	19	23	24	1.98
46708--46996	128	2.3	129	91	1	465	31	19	22	26	1.98
50544--50571	8	3.5	8	100	0	56	50	35	0	14	1.43
51178--51374	82	2.4	83	81	1	245	31	18	17	32	1.94
51178--51400	82	2.7	82	78	2	241	30	18	17	32	1.95
64698--64740	18	2.4	18	92	0	68	34	23	23	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71851--71888	19	2.0	20	85	15	53	21	15	21	42	1.89

Tables:   1

The End!