genome.fa.s5250.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005250.1 Hibiscus syriacus cultivar Beakdansim tig00011874_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190534

Tables:   1   2   

This is table  2  of  2  ( 171 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116984--117289	82	3.7	80	91	3	418	38	24	17	18	1.92
117025--117289	41	6.5	41	95	0	476	38	24	18	18	1.93
120460--120556	47	2.1	47	98	0	185	34	18	16	30	1.93
122393--122445	21	2.5	21	84	0	70	20	22	18	37	1.94
122437--122577	20	7.0	20	77	9	153	36	20	21	21	1.96
122437--122602	40	4.1	40	81	8	167	36	21	20	22	1.96
125912--126005	20	4.7	20	88	2	136	35	24	21	19	1.96
126010--126065	19	2.8	19	86	5	76	50	17	17	14	1.79
126010--126057	21	2.4	20	89	6	71	52	16	16	14	1.76
126077--126169	33	2.8	34	86	3	125	13	24	20	40	1.89
127024--127081	29	2.0	29	89	0	89	41	18	3	36	1.68
127695--127787	42	2.2	42	80	3	107	22	17	39	20	1.92
128259--128335	20	3.8	20	96	0	145	40	23	19	16	1.91
128374--128422	20	2.5	20	82	0	62	34	22	20	22	1.97
128467--128556	20	4.5	20	97	0	171	20	18	20	41	1.91
128429--128556	40	3.4	40	85	10	171	18	18	19	42	1.89
130431--130500	20	3.5	20	90	0	86	41	25	17	15	1.89
130544--130590	20	2.3	20	88	0	67	21	19	23	36	1.95
131320--131368	21	2.3	21	85	0	62	48	2	4	44	1.33
131270--131406	2	70.0	2	79	9	113	46	2	4	45	1.37
132668--132718	23	2.3	22	83	6	59	49	5	0	45	1.26
140140--140246	48	2.2	48	93	0	178	29	12	19	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140010--140229	122	1.8	122	89	2	352	31	13	18	36	1.89
153444--153480	18	2.1	18	89	0	56	21	18	5	54	1.64
154500--154597	24	4.1	24	82	0	97	41	17	16	24	1.89
154504--154607	48	2.2	48	81	6	122	43	16	16	24	1.87
155317--155379	27	2.3	27	94	0	108	28	11	30	30	1.91
159893--159979	32	2.7	32	78	8	88	39	0	2	58	1.11
160119--160172	17	3.2	17	72	0	54	31	0	3	64	1.11
160741--161241	128	3.9	128	97	0	948	32	19	24	23	1.98
161312--161352	8	5.2	8	82	5	57	36	29	0	34	1.58
166752--166807	27	2.1	27	96	0	103	46	3	14	35	1.62
166961--167000	16	2.5	16	91	0	62	22	52	2	22	1.59
170053--170090	3	12.7	3	100	0	76	68	0	0	31	0.90
170352--170457	53	2.0	53	90	0	167	30	22	18	28	1.98
170409--170571	75	2.2	75	88	0	236	34	19	20	25	1.96
171685--171748	27	2.4	27	97	0	119	15	10	34	39	1.83
172426--172470	13	3.7	13	75	24	53	8	6	20	64	1.44
172434--172487	10	5.1	10	80	12	63	7	7	20	64	1.43
172426--172481	23	2.5	22	88	8	85	7	7	21	64	1.43
180387--180444	24	2.5	21	75	25	55	39	5	22	32	1.76
181144--181188	21	2.1	21	87	0	63	31	28	24	15	1.96
181772--181818	23	2.0	24	91	4	78	44	0	21	34	1.52
181995--182150	31	5.0	31	88	1	224	21	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181997--182150	62	2.5	62	90	2	247	21	20	22	36	1.95
185265--185309	21	2.1	21	87	0	63	31	28	24	15	1.96
186105--186260	31	5.0	31	87	1	215	21	19	22	37	1.95
186107--186260	62	2.5	62	89	2	238	21	19	22	37	1.95
187122--187238	22	5.8	21	81	9	122	23	20	28	28	1.99
187168--187238	18	3.8	18	78	7	70	21	19	29	29	1.98
187122--187234	38	2.8	40	81	8	122	22	20	28	29	1.98

Tables:   1   2

The End!