genome.fa.s5251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005251.1 Hibiscus syriacus cultivar Beakdansim tig00011875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69827

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16425--16487	28	2.2	29	80	13	76	28	20	9	41	1.84
16441--16495	28	2.0	28	96	0	101	27	16	10	45	1.80
16444--16503	28	2.1	28	90	0	93	28	18	8	45	1.78
16566--16628	28	2.2	29	82	8	83	30	20	7	41	1.81
16579--16644	28	2.4	28	89	0	105	30	18	9	42	1.81
16392--16672	141	2.0	141	99	0	553	34	21	6	38	1.78
16875--16988	42	2.7	42	84	8	151	29	25	19	25	1.98
16875--16983	21	5.2	20	73	10	94	27	26	19	26	1.99
17005--17094	21	4.3	21	68	0	63	38	22	13	25	1.90
18528--18590	21	3.0	21	74	2	74	30	25	20	23	1.99
18514--18590	21	3.7	20	71	8	64	31	24	18	25	1.97
18616--18690	21	3.6	21	72	0	69	38	22	17	21	1.93
18868--18906	20	2.0	20	84	0	51	38	17	5	38	1.72
21658--21696	2	19.5	2	100	0	78	51	0	0	48	1.00
25451--25532	23	3.6	22	73	8	76	28	23	24	24	2.00
30596--31512	463	2.0	461	87	5	1334	36	16	17	29	1.92
31812--31889	19	3.7	19	73	23	68	23	19	28	29	1.98
31810--31899	45	2.0	45	93	4	155	26	17	26	28	1.98
32113--32153	20	2.0	21	86	9	59	46	9	4	39	1.58
32953--32996	21	2.1	21	86	0	61	38	15	36	9	1.80
34528--34630	23	4.6	22	85	3	136	24	25	26	24	2.00
34528--34649	44	2.8	42	83	7	138	23	22	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34532--34649	23	5.4	21	83	7	105	24	22	26	26	2.00
35864--35926	23	2.8	22	95	0	72	26	20	26	25	1.99
35871--35952	23	3.6	23	89	0	119	23	20	25	30	1.99
36255--36311	28	2.0	27	80	12	62	52	0	17	29	1.45
37829--37956	31	4.2	30	80	11	136	38	6	1	53	1.35
37829--37956	59	2.1	59	82	8	150	38	6	1	53	1.35
37884--38018	28	5.2	25	75	18	98	38	4	2	54	1.33
37934--37984	23	2.3	22	81	15	61	41	3	3	50	1.39
37974--38018	22	2.0	22	91	8	72	31	2	4	62	1.27
44276--44321	21	2.2	21	100	0	92	60	4	23	10	1.47
44808--45016	104	2.0	104	94	0	364	36	11	13	39	1.80
44989--45027	16	2.5	16	91	4	62	38	2	20	38	1.66
46992--47048	3	18.7	3	82	10	62	38	1	0	59	1.08
46986--47063	33	2.5	31	78	17	97	44	1	0	53	1.08
46991--47064	34	2.2	33	90	7	114	43	2	0	54	1.14
48306--48353	16	3.0	17	85	8	57	29	6	4	60	1.40
48371--48427	15	4.0	14	74	17	55	28	1	3	66	1.18
48503--48544	14	3.0	14	79	10	50	38	4	0	57	1.20
48541--48895	136	2.6	134	80	9	391	38	6	7	47	1.59
48892--48939	21	2.3	20	80	16	53	50	4	0	45	1.21
60915--60945	2	15.5	2	100	0	62	51	0	0	48	1.00
61074--61220	57	2.5	59	79	7	165	29	13	17	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61965--62206	87	2.8	87	88	0	367	43	9	14	33	1.76
62219--62888	198	3.4	198	87	4	924	32	15	13	38	1.87
62947--63011	26	2.3	31	82	12	77	52	3	0	44	1.16
62989--63082	30	3.2	30	79	11	81	50	1	1	47	1.15
63000--63085	14	6.1	14	69	9	50	47	1	1	50	1.16
63014--63082	28	2.5	28	74	6	70	49	1	1	47	1.19
63178--63253	24	2.7	29	67	23	72	32	5	3	57	1.39
63455--63495	21	2.0	21	90	0	64	41	19	0	39	1.52
63764--63844	30	2.8	28	81	12	85	48	1	1	49	1.17
63785--63855	28	2.6	27	76	14	76	47	1	1	49	1.18
63764--63827	30	2.2	31	86	8	89	50	1	0	48	1.10
63835--63879	14	3.1	15	84	6	58	55	2	0	42	1.12
64185--64235	23	2.2	23	89	0	75	33	19	9	37	1.85
64272--64319	23	2.1	23	88	0	69	35	18	8	37	1.81
64179--64409	87	2.7	87	94	0	408	32	13	11	42	1.80
64359--64436	23	3.4	23	94	0	129	33	20	7	38	1.81
66182--66209	2	14.0	2	100	0	56	50	0	0	50	1.00
68505--68531	2	13.5	2	100	0	54	51	0	48	0	1.00
69392--69424	15	2.2	15	100	0	66	54	15	12	18	1.71

Tables:   1

The End!