genome.fa.s5255.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005255.1 Hibiscus syriacus cultivar Beakdansim tig00011891_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90817

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1562--2239	180	3.7	182	95	1	1195	35	15	16	32	1.90
1562--2239	363	1.9	362	94	1	1216	35	15	16	32	1.90
5038--5084	21	2.2	22	77	11	53	40	12	8	38	1.74
5102--5173	23	3.2	23	82	2	83	34	4	19	41	1.71
5795--5831	18	2.1	18	89	0	56	32	5	10	51	1.60
5787--5833	24	2.0	24	86	0	67	34	4	14	46	1.64
6088--6173	39	2.2	39	95	0	154	48	19	13	17	1.80
6576--6648	23	3.2	23	84	0	92	34	4	20	41	1.72
6694--7690	333	3.0	333	98	0	1899	42	8	11	38	1.70
12228--12288	23	2.7	23	84	0	86	31	26	24	18	1.97
12771--12798	2	14.0	2	100	0	56	50	0	0	50	1.00
13711--13768	20	2.7	20	78	10	62	29	20	17	32	1.95
13756--13917	64	2.5	63	79	5	173	25	24	17	32	1.97
14937--14999	24	2.6	24	94	0	108	34	9	31	23	1.87
16885--16918	16	2.2	15	89	5	50	73	2	8	14	1.19
16868--16931	23	2.8	22	81	11	67	73	3	7	15	1.19
16959--16991	2	16.5	2	100	0	66	48	0	0	51	1.00
20320--20369	25	2.0	25	84	0	64	32	22	10	36	1.87
22669--22697	3	10.0	3	92	7	51	34	0	0	65	0.93
22907--22964	31	1.9	29	82	6	71	60	3	6	29	1.39
36059--36106	6	8.0	6	95	0	87	33	14	33	18	1.91
36836--36866	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42518--42547	7	4.3	7	100	0	60	26	26	30	16	1.97
49132--49179	22	2.2	22	88	0	69	10	22	45	20	1.81
49139--49188	17	3.3	15	81	13	57	6	22	50	22	1.70
49187--49253	19	3.5	20	88	8	97	28	31	25	14	1.95
49185--49273	9	9.3	9	77	11	79	29	28	26	15	1.96
49236--49274	21	1.9	21	89	5	62	33	23	25	17	1.96
53117--53151	18	1.9	18	88	0	52	25	31	20	22	1.98
59585--59620	8	4.4	8	93	6	63	47	0	0	52	1.00
59585--59620	17	2.2	16	95	5	63	47	0	0	52	1.00
59872--59949	36	2.1	38	81	13	92	48	3	1	46	1.28
60058--60215	21	7.8	20	70	7	77	38	24	17	19	1.92
60202--60375	20	8.6	20	82	5	208	35	25	19	19	1.96
60182--60373	60	3.2	60	84	0	240	36	24	19	19	1.95
60758--60828	33	2.2	33	92	0	115	11	22	18	47	1.80
60908--61017	21	5.8	20	74	17	108	45	18	24	11	1.83
60901--61017	41	3.1	38	81	14	145	46	17	25	11	1.81
60968--61024	14	3.7	14	75	20	60	43	22	24	8	1.81
60960--61040	33	2.5	33	95	0	144	46	22	22	8	1.78
62779--63244	93	5.1	93	98	1	895	22	12	19	45	1.83
63292--63406	19	6.3	19	82	10	141	46	28	16	8	1.77
63402--63536	19	7.6	19	73	16	119	11	20	23	45	1.83
63424--63480	14	3.7	14	77	20	60	10	21	22	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63407--63497	33	2.8	33	94	0	164	10	20	21	46	1.82
65459--65494	14	2.6	14	95	0	63	33	0	22	44	1.53
65601--65679	19	4.4	19	80	16	105	45	17	22	13	1.84
65726--65904	19	10.4	19	72	23	173	13	21	18	46	1.83
65704--65904	52	3.9	52	76	15	222	13	22	18	45	1.84
65764--65851	14	5.6	14	71	23	68	11	23	19	45	1.83
65745--65937	67	2.9	67	92	2	309	12	21	19	45	1.84
65745--65918	33	5.2	33	93	4	305	12	22	18	45	1.83
65745--65926	100	1.8	99	91	3	303	13	21	18	46	1.83
67132--67156	12	2.1	12	100	0	50	0	28	0	72	0.86
67331--67377	24	2.0	24	87	8	69	38	21	14	25	1.92
68058--68287	20	11.5	20	85	1	237	19	18	24	36	1.94
68274--68356	21	4.0	21	70	6	69	26	16	22	33	1.96
68496--68553	26	2.2	26	100	0	116	37	20	3	37	1.70

Tables:   1

The End!