Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005256.1 Hibiscus syriacus cultivar Beakdansim tig00011893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84364

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2347--2393
11
4.4
11
76
12
53
78
0
2
19
0.85
2868--2902
18
2.0
18
88
5
54
54
40
0
5
1.24
3751--3836
3
26.7
3
76
21
77
65
1
2
31
1.13
3745--3836
20
4.7
20
74
20
79
66
1
3
29
1.14
3752--3841
13
7.2
12
75
22
80
64
1
2
32
1.13
3751--3842
40
2.3
38
89
10
141
64
1
2
32
1.13
3849--3876
12
2.3
12
100
0
56
50
7
7
35
1.57
3869--3972
35
3.0
35
79
10
106
45
9
0
44
1.43
3880--4219
36
9.4
36
67
17
113
44
8
2
44
1.49
3961--4019
2
30.5
2
93
6
104
47
0
0
52
1.00
16868--16939
23
3.2
23
86
2
92
45
1
1
51
1.18
16895--16974
19
4.2
20
72
18
80
43
1
0
55
1.08
19306--19367
30
2.1
29
88
8
90
50
1
9
38
1.45
21660--21737
38
2.0
39
95
2
140
15
34
21
28
1.94
22103--22158
28
2.0
28
89
0
85
32
25
14
28
1.94
22139--22241
41
2.5
41
79
6
102
29
19
13
37
1.90
25952--26058
44
2.4
44
87
3
144
31
19
17
30
1.95
25998--26058
23
2.8
21
65
18
52
31
19
18
31
1.96
26521--26562
14
3.1
14
86
10
52
35
11
7
45
1.69
27739--27859
28
4.4
28
95
2
201
15
8
33
42
1.77
27532--28076
299
1.8
299
93
0
939
23
10
26
38
1.88
28033--28125
38
2.5
38
85
1
116
12
8
37
40
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27825--28431
259
2.4
256
87
5
875
24
11
27
36
1.90
30024--30057
12
2.7
13
90
9
61
41
14
5
38
1.70
30397--30549
62
2.4
65
79
9
181
27
22
18
32
1.97
33580--33646
21
3.3
21
79
8
68
29
19
11
38
1.88
39413--39491
42
1.9
41
86
2
113
25
13
20
40
1.89
41408--41680
55
5.0
55
85
3
336
33
13
18
34
1.90
41882--42602
81
8.9
81
86
0
960
36
11
22
29
1.90
44610--44649
20
2.0
21
85
5
55
25
17
10
47
1.78
46703--46856
65
2.4
64
83
5
168
30
16
23
29
1.96
54036--54067
14
2.1
16
88
11
50
21
9
12
56
1.64
56059--56091
6
5.7
6
85
7
50
84
0
0
15
0.61
56059--56092
11
3.0
11
91
4
50
85
0
0
14
0.60
56187--56251
29
2.2
29
84
10
80
27
12
7
52
1.66
56292--56344
21
2.5
22
75
9
56
33
9
3
52
1.52
56217--56453
115
2.1
116
84
6
322
29
11
4
54
1.56
58139--58269
4
32.8
4
92
0
199
49
4
0
45
1.28
58253--58499
73
3.4
73
84
5
304
46
3
7
42
1.50
58253--58489
37
6.4
37
85
5
302
45
3
7
43
1.49
58548--58589
10
4.0
10
82
11
57
16
4
0
78
0.91
58549--58589
22
2.0
20
90
9
64
14
4
0
80
0.87
67871--67911
21
2.0
20
86
9
57
31
19
19
29
1.96
77751--77940
95
2.0
95
80
2
211
35
15
20
28
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78276--78525
59
4.2
59
90
1
385
35
11
17
35
1.86
78325--78559
118
2.0
118
85
4
316
38
8
16
36
1.79
78759--79223
68
6.8
68
91
0
705
30
14
23
30
1.95
79173--79573
81
4.9
81
85
3
520
34
10
23
30
1.90
79542--79602
29
2.1
29
84
0
77
47
8
19
24
1.76
79750--79780
2
15.5
2
93
0
53
3
0
45
51
1.17
79785--79815
2
15.5
2
100
0
62
51
0
0
48
1.00
84069--84275
59
3.5
59
88
1
281
34
12
18
34
1.88

Tables:   1

The End!